FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3921, 399 aa 1>>>pF1KE3921 399 - 399 aa - 399 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.2778+/-0.00105; mu= 14.0375+/- 0.064 mean_var=129.2959+/-26.535, 0's: 0 Z-trim(108.6): 28 B-trim: 352 in 1/49 Lambda= 0.112793 statistics sampled from 10310 (10326) to 10310 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.662), E-opt: 0.2 (0.317), width: 16 Scan time: 2.860 The best scores are: opt bits E(32554) CCDS430.1 RRAGC gene_id:64121|Hs108|chr1 ( 399) 2631 439.5 2.6e-123 CCDS5022.1 RRAGD gene_id:58528|Hs108|chr6 ( 400) 1957 329.8 2.7e-90 >>CCDS430.1 RRAGC gene_id:64121|Hs108|chr1 (399 aa) initn: 2631 init1: 2631 opt: 2631 Z-score: 2327.4 bits: 439.5 E(32554): 2.6e-123 Smith-Waterman score: 2631; 100.0% identity (100.0% similar) in 399 aa overlap (1-399:1-399) 10 20 30 40 50 60 pF1KE3 MSLQYGAEETPLAGSYGAADSFPKDFGYGVEEEEEEAAAAGGGVGAGAGGGCGPGGADSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 MSLQYGAEETPLAGSYGAADSFPKDFGYGVEEEEEEAAAAGGGVGAGAGGGCGPGGADSS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 MDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 MDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 DGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDHSIFEAFSKVVQKLIPQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 DGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDHSIFEAFSKVVQKLIPQL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 PTLENLLNIFISNSGIEKAFLFDVVSKIYIATDSSPVDMQSYELCCDMIDVVIDVSCIYG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 PTLENLLNIFISNSGIEKAFLFDVVSKIYIATDSSPVDMQSYELCCDMIDVVIDVSCIYG 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 LKEDGSGSAYDKESMAIIKLNNTTVLYLKEVTKFLALVCILREESFERKGLIDYNFHCFR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 LKEDGSGSAYDKESMAIIKLNNTTVLYLKEVTKFLALVCILREESFERKGLIDYNFHCFR 310 320 330 340 350 360 370 380 390 pF1KE3 KAIHEVFEVGVTSHRSCGHQTSASSLKALTHNGTPRNAI ::::::::::::::::::::::::::::::::::::::: CCDS43 KAIHEVFEVGVTSHRSCGHQTSASSLKALTHNGTPRNAI 370 380 390 >>CCDS5022.1 RRAGD gene_id:58528|Hs108|chr6 (400 aa) initn: 1980 init1: 1953 opt: 1957 Z-score: 1734.6 bits: 329.8 E(32554): 2.7e-90 Smith-Waterman score: 1966; 79.9% identity (87.1% similar) in 388 aa overlap (23-396:10-397) 10 20 30 40 50 pF1KE3 MSLQYGAEETPLAGSYGAADSFPKDFGYGVEEEEEEA----AAAGGG---VGAGAGGGCG :.: . :::::. : : : : .: CCDS50 MSQVLGKPQPQDEDDAEEEEEEDELVGLADYGDGPDSSDADPDSGTE 10 20 30 40 60 70 80 90 100 pF1KE3 PGGADSS-------KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISN : : : ::::::::::::::::::::::::::::::::::::::: ..:.:: CCDS50 EGVLDFSDPFSTEVKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKICREDVSN 50 60 70 80 90 100 110 120 130 140 150 160 pF1KE3 SSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYK ::::::::::::::.::::::::::::::::::::.:::.::::::::.:::.::..::: CCDS50 SSFVNFQIWDFPGQIDFFDPTFDYEMIFRGTGALIFVIDSQDDYMEALARLHLTVTRAYK 110 120 130 140 150 160 170 180 190 200 210 220 pF1KE3 VNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDHSIF :: :.:::::::::::::::::::::::::::::::::::::::.::::::::::::::: CCDS50 VNTDINFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKIHLSFYLTSIYDHSIF 170 180 190 200 210 220 230 240 250 260 270 280 pF1KE3 EAFSKVVQKLIPQLPTLENLLNIFISNSGIEKAFLFDVVSKIYIATDSSPVDMQSYELCC ::::::::::::::::::::::::::::::::::::::::::::::::.:::::.::::: CCDS50 EAFSKVVQKLIPQLPTLENLLNIFISNSGIEKAFLFDVVSKIYIATDSTPVDMQTYELCC 230 240 250 260 270 280 290 300 310 320 330 340 pF1KE3 DMIDVVIDVSCIYGLKEDGSGSAYDKESMAIIKLNNTTVLYLKEVTKFLALVCILREESF ::::::::.::::::::::.:. ::::: ::::::::::::::::::::::::..::::: CCDS50 DMIDVVIDISCIYGLKEDGAGTPYDKESTAIIKLNNTTVLYLKEVTKFLALVCFVREESF 290 300 310 320 330 340 350 360 370 380 390 pF1KE3 ERKGLIDYNFHCFRKAIHEVFEVGVTSHRSCGHQTSASSLKALTHNGTPRNAI ::::::::::::::::::::::: . .: :. .. : : ::::: CCDS50 ERKGLIDYNFHCFRKAIHEVFEVRMKVVKSRKVQNRLQKKKRATPNGTPRVLL 350 360 370 380 390 400 399 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 08:56:25 2016 done: Sun Nov 6 08:56:25 2016 Total Scan time: 2.860 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]