FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1422, 425 aa 1>>>pF1KE1422 425 - 425 aa - 425 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.0237+/-0.000373; mu= 6.7423+/- 0.024 mean_var=180.8963+/-35.265, 0's: 0 Z-trim(118.8): 9 B-trim: 0 in 0/54 Lambda= 0.095358 statistics sampled from 32197 (32206) to 32197 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.71), E-opt: 0.2 (0.378), width: 16 Scan time: 8.330 The best scores are: opt bits E(85289) NP_004648 (OMIM: 606728) serum deprivation-respons ( 425) 2664 378.6 1.7e-104 NP_036364 (OMIM: 603198,613327) polymerase I and t ( 390) 647 101.1 5.3e-21 XP_005257299 (OMIM: 603198,613327) PREDICTED: poly ( 225) 425 70.3 5.4e-12 >>NP_004648 (OMIM: 606728) serum deprivation-response pr (425 aa) initn: 2664 init1: 2664 opt: 2664 Z-score: 1997.2 bits: 378.6 E(85289): 1.7e-104 Smith-Waterman score: 2664; 100.0% identity (100.0% similar) in 425 aa overlap (1-425:1-425) 10 20 30 40 50 60 pF1KE1 MGEDAAQAEKFQHPGSDMRQEKPSSPSPMPSSTPSPSLNLGNTEEAIRDNSQVNAVTVLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 MGEDAAQAEKFQHPGSDMRQEKPSSPSPMPSSTPSPSLNLGNTEEAIRDNSQVNAVTVLT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 LLDKLVNMLDAVQENQHKMEQRQISLEGSVKGIQNDLTKLSKYQASTSNTVSKLLEKSRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 LLDKLVNMLDAVQENQHKMEQRQISLEGSVKGIQNDLTKLSKYQASTSNTVSKLLEKSRK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 VSAHTRAVKERMDRQCAQVKRLENNHAQLLRRNHFKVLIFQEENEIPASVFVKQPVSGAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 VSAHTRAVKERMDRQCAQVKRLENNHAQLLRRNHFKVLIFQEENEIPASVFVKQPVSGAV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 EGKEELPDENKSLEETLHTVDLSSDDDLPHDEEALEDSAEEKVEESRAEKIKRSSLKKVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 EGKEELPDENKSLEETLHTVDLSSDDDLPHDEEALEDSAEEKVEESRAEKIKRSSLKKVD 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 SLKKAFSRQNIEKKMNKLGTKIVSVERREKIKKSLTSNHQKISSGKSSPFKVSPLTFGRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 SLKKAFSRQNIEKKMNKLGTKIVSVERREKIKKSLTSNHQKISSGKSSPFKVSPLTFGRK 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 KVREGESHAENETKSEDLPSSEQMPNDQEEESFAEGHSEASLASALVEGEIAEEAAEKAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 KVREGESHAENETKSEDLPSSEQMPNDQEEESFAEGHSEASLASALVEGEIAEEAAEKAT 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE1 SRGSNSGMDSNIDLTIVEDEEEESVALEQAQKVRYEGSYALTSEEAERSDGDPVQPAVLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 SRGSNSGMDSNIDLTIVEDEEEESVALEQAQKVRYEGSYALTSEEAERSDGDPVQPAVLQ 370 380 390 400 410 420 pF1KE1 VHQTS ::::: NP_004 VHQTS >>NP_036364 (OMIM: 603198,613327) polymerase I and trans (390 aa) initn: 680 init1: 418 opt: 647 Z-score: 498.0 bits: 101.1 E(85289): 5.3e-21 Smith-Waterman score: 703; 38.5% identity (67.5% similar) in 382 aa overlap (14-355:14-379) 10 20 30 40 50 pF1KE1 MGEDAAQAEKFQHPG-SDMRQEKPSSPSPMPSSTPSPSLNLGNTEEAIRDNSQVNAVTVL :: : . .::: . . . :: . ..:: :... :::.: :: NP_036 MEDPTLYIVERPLPGYPDAEAPEPSSAGAQAAEEPSGA----GSEELIKSD-QVNGVLVL 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 TLLDKLVNMLDAVQENQHKMEQRQISLEGSVKGIQNDLTKLSKYQASTSNTVSKLLEKSR .::::... .: .: .: ..:.:: .::.:..::..:.::.: .:.::::::::::: : NP_036 SLLDKIIGAVDQIQLTQAQLEERQAEMEGAVQSIQGELSKLGKAHATTSNTVSKLLEKVR 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 KVSAHTRAVKERMDRQCAQVKRLENNHAQLLRRNHFKVLIFQEENEIPASVFVKQPV--S :::.....:. ..:: .:.:.:: :.:.:::: .:::.:.:.: ..::.. ... . : NP_036 KVSVNVKTVRGSLERQAGQIKKLEVNEAELLRRRNFKVMIYQDEVKLPAKLSISKSLKES 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 GAVEGKE-ELPDENKSLEETLHTVDLSSDDDLPHDEEALEDSAEEKVEESRAEKIKRSSL :. :: : :.. :: ...:::: ::.: .:: .::::::.::::.: NP_036 EALPEKEGEELGEGERPEEDAAALELSSD-------EAVE--VEEVIEESRAERIKRSGL 180 190 200 210 220 240 250 260 pF1KE1 KKVDSLKKAFS-----------------------------RQNIEKKMNKLGTKIVSVER ..::..::::: :...::.::::::..: .:: NP_036 RRVDDFKKAFSKEKMEKTKVRTRENLEKTRLKTKENLEKTRHTLEKRMNKLGTRLVPAER 230 240 250 260 270 280 270 280 290 300 310 320 pF1KE1 REKIK-------KSLTSNHQKISSGKSSPFKVSPLTFGRKKVREGESHAENETKSEDLPS :::.: ::.: .: . .:.. .:: :.:: ::.:::. .. . :. .. . NP_036 REKLKTSRDKLRKSFTPDHVVYARSKTAVYKVPPFTFHVKKIREGQVEVLKATEMVEVGA 290 300 310 320 330 340 330 340 350 360 370 380 pF1KE1 SEQMPNDQEEESFAEGHSEASLASALVEGEIAEEAAEKATSRGSNSGMDSNIDLTIVEDE ... . .. :. .. . . ::. ::.::. NP_036 DDDEGGAERGEAGDLRRGSSPDVHALL--EITEESDAVLVDKSDSD 350 360 370 380 390 390 400 410 420 pF1KE1 EEESVALEQAQKVRYEGSYALTSEEAERSDGDPVQPAVLQVHQTS >>XP_005257299 (OMIM: 603198,613327) PREDICTED: polymera (225 aa) initn: 416 init1: 393 opt: 425 Z-score: 336.3 bits: 70.3 E(85289): 5.4e-12 Smith-Waterman score: 425; 44.2% identity (76.1% similar) in 163 aa overlap (14-175:14-171) 10 20 30 40 50 pF1KE1 MGEDAAQAEKFQHPG-SDMRQEKPSSPSPMPSSTPSPSLNLGNTEEAIRDNSQVNAVTVL :: : . .::: . . . :: . ..:: :... :::.: :: XP_005 MEDPTLYIVERPLPGYPDAEAPEPSSAGAQAAEEPSGA----GSEELIKSD-QVNGVLVL 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 TLLDKLVNMLDAVQENQHKMEQRQISLEGSVKGIQNDLTKLSKYQASTSNTVSKLLEKSR .::::... .: .: .: ..:.:: .::.:..::..:.::.: .:.::::::::::: : XP_005 SLLDKIIGAVDQIQLTQAQLEERQAEMEGAVQSIQGELSKLGKAHATTSNTVSKLLEKVR 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 KVSAHTRAVKERMDRQCAQVKRLENNHAQLLRRNHFKVLIFQEENEIPASVFVKQPVSGA :::.....:. ..:: .:.:.:: :.:.:::: .:::.:.: ... : . : XP_005 KVSVNVKTVRGSLERQAGQIKKLEVNEAELLRRRNFKVMIYQPKKKPNAPSDLATPKIVP 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 VEGKEELPDENKSLEETLHTVDLSSDDDLPHDEEALEDSAEEKVEESRAEKIKRSSLKKV XP_005 FDLPETEPFDLKPETVPELPPFDQTPRALPYYPEPGPRPTPEELTAGGSV 180 190 200 210 220 425 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 01:11:27 2016 done: Mon Nov 7 01:11:28 2016 Total Scan time: 8.330 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]