Result of FASTA (ccds) for
pFN21AE1422
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1422, 425 aa
1>>>pF1KE1422 425 - 425 aa - 425 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.8208+/-0.000972; mu= 7.9475+/- 0.060
mean_var=160.8581+/-31.552, 0's: 0 Z-trim(110.7): 14 B-trim: 115 in 2/50
Lambda= 0.101124
statistics sampled from 11791 (11799) to 11791 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.698), E-opt: 0.2 (0.362), width: 16
Scan time: 2.540
The best scores are: opt bits E(32554)
CCDS2313.1 SDPR gene_id:8436|Hs108|chr2 ( 425) 2664 400.3 1.8e-111
CCDS11425.1 PTRF gene_id:284119|Hs108|chr17 ( 390) 647 106.1 6.4e-23
CCDS35083.1 MURC gene_id:347273|Hs108|chr9 ( 364) 424 73.5 3.8e-13
CCDS7762.1 PRKCDBP gene_id:112464|Hs108|chr11 ( 261) 387 68.0 1.2e-11
>>CCDS2313.1 SDPR gene_id:8436|Hs108|chr2 (425 aa)
initn: 2664 init1: 2664 opt: 2664 Z-score: 2114.8 bits: 400.3 E(32554): 1.8e-111
Smith-Waterman score: 2664; 100.0% identity (100.0% similar) in 425 aa overlap (1-425:1-425)
10 20 30 40 50 60
pF1KE1 MGEDAAQAEKFQHPGSDMRQEKPSSPSPMPSSTPSPSLNLGNTEEAIRDNSQVNAVTVLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 MGEDAAQAEKFQHPGSDMRQEKPSSPSPMPSSTPSPSLNLGNTEEAIRDNSQVNAVTVLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 LLDKLVNMLDAVQENQHKMEQRQISLEGSVKGIQNDLTKLSKYQASTSNTVSKLLEKSRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 LLDKLVNMLDAVQENQHKMEQRQISLEGSVKGIQNDLTKLSKYQASTSNTVSKLLEKSRK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 VSAHTRAVKERMDRQCAQVKRLENNHAQLLRRNHFKVLIFQEENEIPASVFVKQPVSGAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 VSAHTRAVKERMDRQCAQVKRLENNHAQLLRRNHFKVLIFQEENEIPASVFVKQPVSGAV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 EGKEELPDENKSLEETLHTVDLSSDDDLPHDEEALEDSAEEKVEESRAEKIKRSSLKKVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 EGKEELPDENKSLEETLHTVDLSSDDDLPHDEEALEDSAEEKVEESRAEKIKRSSLKKVD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 SLKKAFSRQNIEKKMNKLGTKIVSVERREKIKKSLTSNHQKISSGKSSPFKVSPLTFGRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 SLKKAFSRQNIEKKMNKLGTKIVSVERREKIKKSLTSNHQKISSGKSSPFKVSPLTFGRK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 KVREGESHAENETKSEDLPSSEQMPNDQEEESFAEGHSEASLASALVEGEIAEEAAEKAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 KVREGESHAENETKSEDLPSSEQMPNDQEEESFAEGHSEASLASALVEGEIAEEAAEKAT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE1 SRGSNSGMDSNIDLTIVEDEEEESVALEQAQKVRYEGSYALTSEEAERSDGDPVQPAVLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 SRGSNSGMDSNIDLTIVEDEEEESVALEQAQKVRYEGSYALTSEEAERSDGDPVQPAVLQ
370 380 390 400 410 420
pF1KE1 VHQTS
:::::
CCDS23 VHQTS
>>CCDS11425.1 PTRF gene_id:284119|Hs108|chr17 (390 aa)
initn: 680 init1: 418 opt: 647 Z-score: 525.0 bits: 106.1 E(32554): 6.4e-23
Smith-Waterman score: 703; 38.5% identity (67.5% similar) in 382 aa overlap (14-355:14-379)
10 20 30 40 50
pF1KE1 MGEDAAQAEKFQHPG-SDMRQEKPSSPSPMPSSTPSPSLNLGNTEEAIRDNSQVNAVTVL
:: : . .::: . . . :: . ..:: :... :::.: ::
CCDS11 MEDPTLYIVERPLPGYPDAEAPEPSSAGAQAAEEPSGA----GSEELIKSD-QVNGVLVL
10 20 30 40 50
60 70 80 90 100 110
pF1KE1 TLLDKLVNMLDAVQENQHKMEQRQISLEGSVKGIQNDLTKLSKYQASTSNTVSKLLEKSR
.::::... .: .: .: ..:.:: .::.:..::..:.::.: .:.::::::::::: :
CCDS11 SLLDKIIGAVDQIQLTQAQLEERQAEMEGAVQSIQGELSKLGKAHATTSNTVSKLLEKVR
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE1 KVSAHTRAVKERMDRQCAQVKRLENNHAQLLRRNHFKVLIFQEENEIPASVFVKQPV--S
:::.....:. ..:: .:.:.:: :.:.:::: .:::.:.:.: ..::.. ... . :
CCDS11 KVSVNVKTVRGSLERQAGQIKKLEVNEAELLRRRNFKVMIYQDEVKLPAKLSISKSLKES
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE1 GAVEGKE-ELPDENKSLEETLHTVDLSSDDDLPHDEEALEDSAEEKVEESRAEKIKRSSL
:. :: : :.. :: ...:::: ::.: .:: .::::::.::::.:
CCDS11 EALPEKEGEELGEGERPEEDAAALELSSD-------EAVE--VEEVIEESRAERIKRSGL
180 190 200 210 220
240 250 260
pF1KE1 KKVDSLKKAFS-----------------------------RQNIEKKMNKLGTKIVSVER
..::..::::: :...::.::::::..: .::
CCDS11 RRVDDFKKAFSKEKMEKTKVRTRENLEKTRLKTKENLEKTRHTLEKRMNKLGTRLVPAER
230 240 250 260 270 280
270 280 290 300 310 320
pF1KE1 REKIK-------KSLTSNHQKISSGKSSPFKVSPLTFGRKKVREGESHAENETKSEDLPS
:::.: ::.: .: . .:.. .:: :.:: ::.:::. .. . :. .. .
CCDS11 REKLKTSRDKLRKSFTPDHVVYARSKTAVYKVPPFTFHVKKIREGQVEVLKATEMVEVGA
290 300 310 320 330 340
330 340 350 360 370 380
pF1KE1 SEQMPNDQEEESFAEGHSEASLASALVEGEIAEEAAEKATSRGSNSGMDSNIDLTIVEDE
... . .. :. .. . . ::. ::.::.
CCDS11 DDDEGGAERGEAGDLRRGSSPDVHALL--EITEESDAVLVDKSDSD
350 360 370 380 390
390 400 410 420
pF1KE1 EEESVALEQAQKVRYEGSYALTSEEAERSDGDPVQPAVLQVHQTS
>>CCDS35083.1 MURC gene_id:347273|Hs108|chr9 (364 aa)
initn: 534 init1: 310 opt: 424 Z-score: 349.6 bits: 73.5 E(32554): 3.8e-13
Smith-Waterman score: 520; 32.7% identity (67.9% similar) in 330 aa overlap (31-330:6-316)
10 20 30 40 50 60
pF1KE1 MGEDAAQAEKFQHPGSDMRQEKPSSPSPMPSSTPSPSLNLGNTEEAIRDNSQVNAVTVLT
:.. . ... . . .:..: :.:..:
CCDS35 MEHNGSASNADKIHQNRLSSVTEDEDQDAALTIVT
10 20 30
70 80 90 100 110 120
pF1KE1 LLDKLVNMLDAVQENQHKMEQRQISLEGSVKGIQNDLTKLSKYQASTSNTVSKLLEKSRK
.:::.....:.:: .:...:.:. .:...:..: :: :::. ...:.. ..::.::.::
CCDS35 VLDKVASIVDSVQASQKRIEERHREMENAIKSVQIDLLKLSQSHSNTGHIINKLFEKTRK
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE1 VSAHTRAVKERMDRQCAQVKRLENNHAQLLRRNHFKVLIFQEENEIPASVFVKQPVSGAV
:::: . :: :...: .::..: .. .....:.:.:.::::. . :.:. : . . .
CCDS35 VSAHIKDVKARVEKQQIHVKKVEVKQEEIMKKNKFRVVIFQEKFRCPTSLSVVKD-RNLT
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE1 EGKEELPDENKSLEETLHTVDLSSDDDLPHDEEALEDSAEEKVEESRAEKIKRSSLKKVD
:..:: :.. .. ::::::. : :::::. ....:. ...:
CCDS35 ENQEE--DDDDIFDP---PVDLSSDE-------------EYYVEESRSARLRKSGKEHID
160 170 180 190
250 260 270 280
pF1KE1 SLKKAFS-------RQNIEKKMNKLGTKIVSVERREKIKKS---LTSNHQKI-SSGK---
..::::: :::..::.:.. :.::. ::::....: : .. ... .::.
CCDS35 NIKKAFSKENMQKTRQNLDKKVNRIRTRIVTPERRERLRQSGERLRQSGERLRQSGERFK
200 210 220 230 240 250
290 300 310 320 330
pF1KE1 -----SSP----FKVSPLTFGRKK-VREGESHAENE-----TKSEDL-PSSEQMPNDQEE
..: ::. : :. . : ::: :.. ..::.: : :: . .. :
CCDS35 KSISNAAPSKEAFKMRSLRKGKDRTVAEGEECAREMGVDIIARSESLGPISELYSDELSE
260 270 280 290 300 310
340 350 360 370 380 390
pF1KE1 ESFAEGHSEASLASALVEGEIAEEAAEKATSRGSNSGMDSNIDLTIVEDEEEESVALEQA
CCDS35 PEHEAARPVYPPHEGREIPTPEPLKVTFKSQVKVEDDESLLLDLKHSS
320 330 340 350 360
>>CCDS7762.1 PRKCDBP gene_id:112464|Hs108|chr11 (261 aa)
initn: 448 init1: 375 opt: 387 Z-score: 322.5 bits: 68.0 E(32554): 1.2e-11
Smith-Waterman score: 435; 41.2% identity (69.7% similar) in 211 aa overlap (37-247:5-194)
10 20 30 40 50 60
pF1KE1 QAEKFQHPGSDMRQEKPSSPSPMPSSTPSPSLNLGNTEEAIRDNSQVNAVTVLTLLDKLV
.:. : . :: .. :.::::.:::.::.
CCDS77 MRESALERGPVPEAPA-GGPVHAVTVVTLLEKLA
10 20 30
70 80 90 100 110 120
pF1KE1 NMLDAVQENQHKMEQRQISLEGSVKGIQNDLTKLSKYQASTSNTVSKLLEKSRKVSAHTR
.::....: : . .:: .: :::. ::. : ::. . .::::...:: :...::.:.
CCDS77 SMLETLRERQGGLARRQGGLAGSVRRIQSGLGALSRSHDTTSNTLAQLLAKAERVSSHAN
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE1 AVKERMDRQCAQVKRLENNHAQLLRRNHFKVLIFQEENEIPASVFVKQPVSGAVEGKEEL
:..:: :. :::.::: ::. :. :....::.:.::.:.:::.: : :
CCDS77 AAQERAVRRAAQVQRLEANHGLLVARGKLHVLLFKEEGEVPASAFQKAP-----------
100 110 120 130 140
190 200 210 220 230 240
pF1KE1 PDENKSLEETLHTVDLSSDDDLPHDEEALEDSAEEKVEESRAEKIKRSSLKKVDSLKKAF
: : .: : . :. :.: :: :: :::....:..:.::.::..:.
CCDS77 --------EPLGPADQSELGPEQLEAEVGESSDEEPVE-SRAQRLRRTGLQKVQSLRRAL
150 160 170 180 190
250 260 270 280 290 300
pF1KE1 SRQNIEKKMNKLGTKIVSVERREKIKKSLTSNHQKISSGKSSPFKVSPLTFGRKKVREGE
:
CCDS77 SGRKGPAAPPPTPVKPPRLGPGRSAEAQPEAQPALEPTLEPEPPQDTEEDPGRPGAAEEA
200 210 220 230 240 250
425 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 01:11:26 2016 done: Mon Nov 7 01:11:27 2016
Total Scan time: 2.540 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]