FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1514, 243 aa
  1>>>pF1KE1514 243 - 243 aa - 243 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6673+/-0.000843; mu= 12.8541+/- 0.050
 mean_var=80.8337+/-15.983, 0's: 0 Z-trim(108.1): 53  B-trim: 209 in 2/50
 Lambda= 0.142652
 statistics sampled from 9926 (9978) to 9926 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.688), E-opt: 0.2 (0.307), width:  16
 Scan time:  1.980

The best scores are:                                      opt bits E(32554)
CCDS1208.1 CD48 gene_id:962|Hs108|chr1             ( 243) 1639 346.6 8.6e-96
CCDS72955.1 CD48 gene_id:962|Hs108|chr1            ( 252) 1475 312.9 1.3e-85


>>CCDS1208.1 CD48 gene_id:962|Hs108|chr1                  (243 aa)
 initn: 1639 init1: 1639 opt: 1639  Z-score: 1833.3  bits: 346.6 E(32554): 8.6e-96
Smith-Waterman score: 1639; 100.0% identity (100.0% similar) in 243 aa overlap (1-243:1-243)

               10        20        30        40        50        60
pF1KE1 MCSRGWDSCLALELLLLPLSLLVTSIQGHLVHMTVVSGSNVTLNISESLPENYKQLTWFY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MCSRGWDSCLALELLLLPLSLLVTSIQGHLVHMTVVSGSNVTLNISESLPENYKQLTWFY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 TFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 WKIKLQVLDPVPKPVIKIEKIEDMDDNCYLKLSCVIPGESVNYTWYGDKRPFPKELQNSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 WKIKLQVLDPVPKPVIKIEKIEDMDDNCYLKLSCVIPGESVNYTWYGDKRPFPKELQNSV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 LETTLMPHNYSRCYTCQVSNSVSSKNGTVCLSPPCTLARSFGVEWIASWLVVTVPTILGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LETTLMPHNYSRCYTCQVSNSVSSKNGTVCLSPPCTLARSFGVEWIASWLVVTVPTILGL
              190       200       210       220       230       240

          
pF1KE1 LLT
       :::
CCDS12 LLT
          

>>CCDS72955.1 CD48 gene_id:962|Hs108|chr1                 (252 aa)
 initn: 1475 init1: 1475 opt: 1475  Z-score: 1650.6  bits: 312.9 E(32554): 1.3e-85
Smith-Waterman score: 1475; 99.1% identity (100.0% similar) in 219 aa overlap (1-219:1-219)

               10        20        30        40        50        60
pF1KE1 MCSRGWDSCLALELLLLPLSLLVTSIQGHLVHMTVVSGSNVTLNISESLPENYKQLTWFY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 MCSRGWDSCLALELLLLPLSLLVTSIQGHLVHMTVVSGSNVTLNISESLPENYKQLTWFY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 TFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 TFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 WKIKLQVLDPVPKPVIKIEKIEDMDDNCYLKLSCVIPGESVNYTWYGDKRPFPKELQNSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 WKIKLQVLDPVPKPVIKIEKIEDMDDNCYLKLSCVIPGESVNYTWYGDKRPFPKELQNSV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 LETTLMPHNYSRCYTCQVSNSVSSKNGTVCLSPPCTLARSFGVEWIASWLVVTVPTILGL
       :::::::::::::::::::::::::::::::::::::..                     
CCDS72 LETTLMPHNYSRCYTCQVSNSVSSKNGTVCLSPPCTLGKKDPWELRGAQGNWSCFEQRKA
              190       200       210       220       230       240

                   
pF1KE1 LLT         
                   
CCDS72 GGPIQPPCTVWW
              250  




243 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 01:11:58 2016 done: Mon Nov  7 01:11:58 2016
 Total Scan time:  1.980 Total Display time: -0.050

Function used was FASTA [36.3.4 Apr, 2011]