FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1310, 397 aa 1>>>pF1KE1310 397 - 397 aa - 397 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 12.6577+/-0.000431; mu= -18.3407+/- 0.027 mean_var=346.8122+/-69.698, 0's: 0 Z-trim(121.7): 7 B-trim: 185 in 2/56 Lambda= 0.068870 statistics sampled from 38620 (38628) to 38620 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.772), E-opt: 0.2 (0.453), width: 16 Scan time: 9.240 The best scores are: opt bits E(85289) NP_002987 (OMIM: 601880) fractalkine isoform 1 pre ( 397) 2695 281.3 2.8e-75 NP_001291321 (OMIM: 601880) fractalkine isoform 2 ( 312) 2110 223.1 7.1e-58 >>NP_002987 (OMIM: 601880) fractalkine isoform 1 precurs (397 aa) initn: 2695 init1: 2695 opt: 2695 Z-score: 1472.5 bits: 281.3 E(85289): 2.8e-75 Smith-Waterman score: 2695; 100.0% identity (100.0% similar) in 397 aa overlap (1-397:1-397) 10 20 30 40 50 60 pF1KE1 MAPISLSWLLRLATFCHLTVLLAGQHHGVTKCNITCSKMTSKIPVALLIHYQQNQASCGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 MAPISLSWLLRLATFCHLTVLLAGQHHGVTKCNITCSKMTSKIPVALLIHYQQNQASCGK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 RAIILETRQHRLFCADPKEQWVKDAMQHLDRQAAALTRNGGTFEKQIGEVKPRTTPAAGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 RAIILETRQHRLFCADPKEQWVKDAMQHLDRQAAALTRNGGTFEKQIGEVKPRTTPAAGG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 MDESVVLEPEATGESSSLEPTPSSQEAQRALGTSPELPTGVTGSSGTRLPPTPKAQDGGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 MDESVVLEPEATGESSSLEPTPSSQEAQRALGTSPELPTGVTGSSGTRLPPTPKAQDGGP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 VGTELFRVPPVSTAATWQSSAPHQPGPSLWAEAKTSEAPSTQDPSTQASTASSPAPEENA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 VGTELFRVPPVSTAATWQSSAPHQPGPSLWAEAKTSEAPSTQDPSTQASTASSPAPEENA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 PSEGQRVWGQGQSPRPENSLEREEMGPVPAHTDAFQDWGPGSMAHVSVVPVSSEGTPSRE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 PSEGQRVWGQGQSPRPENSLEREEMGPVPAHTDAFQDWGPGSMAHVSVVPVSSEGTPSRE 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 PVASGSWTPKAEEPIHATMDPQRLGVLITPVPDAQAATRRQAVGLLAFLGLLFCLGVAMF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 PVASGSWTPKAEEPIHATMDPQRLGVLITPVPDAQAATRRQAVGLLAFLGLLFCLGVAMF 310 320 330 340 350 360 370 380 390 pF1KE1 TYQSLQGCPRKMAGEMAEGLRYIPRSCGSNSYVLVPV ::::::::::::::::::::::::::::::::::::: NP_002 TYQSLQGCPRKMAGEMAEGLRYIPRSCGSNSYVLVPV 370 380 390 >>NP_001291321 (OMIM: 601880) fractalkine isoform 2 [Hom (312 aa) initn: 2110 init1: 2110 opt: 2110 Z-score: 1160.0 bits: 223.1 E(85289): 7.1e-58 Smith-Waterman score: 2110; 100.0% identity (100.0% similar) in 312 aa overlap (86-397:1-312) 60 70 80 90 100 110 pF1KE1 ASCGKRAIILETRQHRLFCADPKEQWVKDAMQHLDRQAAALTRNGGTFEKQIGEVKPRTT :::::::::::::::::::::::::::::: NP_001 MQHLDRQAAALTRNGGTFEKQIGEVKPRTT 10 20 30 120 130 140 150 160 170 pF1KE1 PAAGGMDESVVLEPEATGESSSLEPTPSSQEAQRALGTSPELPTGVTGSSGTRLPPTPKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PAAGGMDESVVLEPEATGESSSLEPTPSSQEAQRALGTSPELPTGVTGSSGTRLPPTPKA 40 50 60 70 80 90 180 190 200 210 220 230 pF1KE1 QDGGPVGTELFRVPPVSTAATWQSSAPHQPGPSLWAEAKTSEAPSTQDPSTQASTASSPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QDGGPVGTELFRVPPVSTAATWQSSAPHQPGPSLWAEAKTSEAPSTQDPSTQASTASSPA 100 110 120 130 140 150 240 250 260 270 280 290 pF1KE1 PEENAPSEGQRVWGQGQSPRPENSLEREEMGPVPAHTDAFQDWGPGSMAHVSVVPVSSEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PEENAPSEGQRVWGQGQSPRPENSLEREEMGPVPAHTDAFQDWGPGSMAHVSVVPVSSEG 160 170 180 190 200 210 300 310 320 330 340 350 pF1KE1 TPSREPVASGSWTPKAEEPIHATMDPQRLGVLITPVPDAQAATRRQAVGLLAFLGLLFCL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TPSREPVASGSWTPKAEEPIHATMDPQRLGVLITPVPDAQAATRRQAVGLLAFLGLLFCL 220 230 240 250 260 270 360 370 380 390 pF1KE1 GVAMFTYQSLQGCPRKMAGEMAEGLRYIPRSCGSNSYVLVPV :::::::::::::::::::::::::::::::::::::::::: NP_001 GVAMFTYQSLQGCPRKMAGEMAEGLRYIPRSCGSNSYVLVPV 280 290 300 310 397 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 01:13:16 2016 done: Mon Nov 7 01:13:18 2016 Total Scan time: 9.240 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]