FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5210, 180 aa
  1>>>pF1KE5210 180 - 180 aa - 180 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7706+/-0.000916; mu= 9.2310+/- 0.055
 mean_var=53.7762+/-10.775, 0's: 0 Z-trim(103.4): 26  B-trim: 0 in 0/48
 Lambda= 0.174896
 statistics sampled from 7386 (7388) to 7386 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.616), E-opt: 0.2 (0.227), width:  16
 Scan time:  1.660

The best scores are:                                      opt bits E(32554)
CCDS10877.1 NIP7 gene_id:51388|Hs108|chr16         ( 180) 1192 308.8 1.1e-84
CCDS56003.1 NIP7 gene_id:51388|Hs108|chr16         ( 133)  620 164.5 2.3e-41


>>CCDS10877.1 NIP7 gene_id:51388|Hs108|chr16              (180 aa)
 initn: 1192 init1: 1192 opt: 1192  Z-score: 1633.6  bits: 308.8 E(32554): 1.1e-84
Smith-Waterman score: 1192; 100.0% identity (100.0% similar) in 180 aa overlap (1-180:1-180)

               10        20        30        40        50        60
pF1KE5 MRPLTEEETRVMFEKIAKYIGENLQLLVDRPDGTYCFRLHNDRVYYVSEKIMKLAANISG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MRPLTEEETRVMFEKIAKYIGENLQLLVDRPDGTYCFRLHNDRVYYVSEKIMKLAANISG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 DKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWIKPGAEQSFLYGNHVLKSGLGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 DKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWIKPGAEQSFLYGNHVLKSGLGR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 ITENTSQYQGVVVYSMADIPLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEYVRHEETLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ITENTSQYQGVVVYSMADIPLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEYVRHEETLT
              130       140       150       160       170       180

>>CCDS56003.1 NIP7 gene_id:51388|Hs108|chr16              (133 aa)
 initn: 866 init1: 620 opt: 620  Z-score: 856.0  bits: 164.5 E(32554): 2.3e-41
Smith-Waterman score: 776; 73.9% identity (73.9% similar) in 180 aa overlap (1-180:1-133)

               10        20        30        40        50        60
pF1KE5 MRPLTEEETRVMFEKIAKYIGENLQLLVDRPDGTYCFRLHNDRVYYVSEKIMKLAANISG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MRPLTEEETRVMFEKIAKYIGENLQLLVDRPDGTYCFRLHNDRVYYVSEKIMKLAANISG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 DKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWIKPGAEQSFLYGNHVLKSGLGR
       ::::::::::::::::::::::::::::::::::                          
CCDS56 DKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAK--------------------------
               70        80        90                              

              130       140       150       160       170       180
pF1KE5 ITENTSQYQGVVVYSMADIPLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEYVRHEETLT
                            :::::::::::::::::::::::::::::::::::::::
CCDS56 ---------------------GFGVAAKSTQDCRKVDPMAIVVFHQADIGEYVRHEETLT
                               100       110       120       130   




180 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:32:17 2016 done: Mon Nov  7 22:32:18 2016
 Total Scan time:  1.660 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]