FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB6937, 210 aa 1>>>pF1KB6937 210 - 210 aa - 210 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.3495+/-0.000311; mu= 10.5979+/- 0.019 mean_var=98.6826+/-19.880, 0's: 0 Z-trim(119.7): 25 B-trim: 1357 in 1/54 Lambda= 0.129108 statistics sampled from 34086 (34112) to 34086 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.751), E-opt: 0.2 (0.4), width: 16 Scan time: 6.800 The best scores are: opt bits E(85289) NP_057513 (OMIM: 615526) coatomer subunit zeta-2 [ ( 210) 1384 267.1 1.5e-71 XP_011523176 (OMIM: 615526) PREDICTED: coatomer su ( 184) 923 181.2 9.5e-46 NP_001258665 (OMIM: 615472) coatomer subunit zeta- ( 185) 871 171.5 7.9e-43 NP_057141 (OMIM: 615472) coatomer subunit zeta-1 i ( 177) 859 169.2 3.6e-42 NP_001258663 (OMIM: 615472) coatomer subunit zeta- ( 154) 738 146.7 1.9e-35 XP_016874486 (OMIM: 615472) PREDICTED: coatomer su ( 180) 727 144.7 9.2e-35 NP_001258664 (OMIM: 615472) coatomer subunit zeta- ( 160) 720 143.3 2.1e-34 XP_016864513 (OMIM: 601507) PREDICTED: AP-3 comple ( 262) 204 47.3 2.6e-05 XP_011541438 (OMIM: 601507) PREDICTED: AP-3 comple ( 262) 204 47.3 2.6e-05 NP_001305022 (OMIM: 601507) AP-3 complex subunit s ( 162) 193 45.2 7.3e-05 NP_005820 (OMIM: 602416) AP-3 complex subunit sigm ( 193) 188 44.3 0.00016 NP_001275 (OMIM: 601507) AP-3 complex subunit sigm ( 193) 186 43.9 0.00021 >>NP_057513 (OMIM: 615526) coatomer subunit zeta-2 [Homo (210 aa) initn: 1384 init1: 1384 opt: 1384 Z-score: 1405.5 bits: 267.1 E(85289): 1.5e-71 Smith-Waterman score: 1384; 100.0% identity (100.0% similar) in 210 aa overlap (1-210:1-210) 10 20 30 40 50 60 pF1KB6 MQRPEAWPRPHPGEGAAAAQAGGPAPPARAGEPSGLRLQEPSLYTIKAVFILDNDGRRLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 MQRPEAWPRPHPGEGAAAAQAGGPAPPARAGEPSGLRLQEPSLYTIKAVFILDNDGRRLL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 AKYYDDTFPSMKEQMVFEKNVFNKTSRTESEIAFFGGMTIVYKNSIDLFLYVVGSSYENE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 AKYYDDTFPSMKEQMVFEKNVFNKTSRTESEIAFFGGMTIVYKNSIDLFLYVVGSSYENE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB6 LMLMSVLTCLFESLNHMLRKNVEKRWLLENMDGAFLVLDEIVDGGVILESDPQQVIQKVN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 LMLMSVLTCLFESLNHMLRKNVEKRWLLENMDGAFLVLDEIVDGGVILESDPQQVIQKVN 130 140 150 160 170 180 190 200 210 pF1KB6 FRADDGGLTEQSVAQVLQSAKEQIKWSLLK :::::::::::::::::::::::::::::: NP_057 FRADDGGLTEQSVAQVLQSAKEQIKWSLLK 190 200 210 >>XP_011523176 (OMIM: 615526) PREDICTED: coatomer subuni (184 aa) initn: 1189 init1: 920 opt: 923 Z-score: 942.3 bits: 181.2 E(85289): 9.5e-46 Smith-Waterman score: 1141; 87.1% identity (87.6% similar) in 210 aa overlap (1-210:1-184) 10 20 30 40 50 60 pF1KB6 MQRPEAWPRPHPGEGAAAAQAGGPAPPARAGEPSGLRLQEPSLYTIKAVFILDNDGRRLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MQRPEAWPRPHPGEGAAAAQAGGPAPPARAGEPSGLRLQEPSLYTIKAVFILDNDGRRLL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 AKYYDDTFPSMKEQMVFEKNVFNKTSRTESEIAFFGGMTIVYKNSIDLFLYVVGSSYENE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 AKYYDDTFPSMKEQMVFEKNVFNKTSRTESEIAFFGGMTIVYKNSIDLFLYVVGSSYENE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB6 LMLMSVLTCLFESLNHMLRKNVEKRWLLENMDGAFLVLDEIVDGGVILESDPQQVIQKVN :::::::::::::::::: .::::::::::::::: XP_011 LMLMSVLTCLFESLNHML--------------------------SVILESDPQQVIQKVN 130 140 150 190 200 210 pF1KB6 FRADDGGLTEQSVAQVLQSAKEQIKWSLLK :::::::::::::::::::::::::::::: XP_011 FRADDGGLTEQSVAQVLQSAKEQIKWSLLK 160 170 180 >>NP_001258665 (OMIM: 615472) coatomer subunit zeta-1 is (185 aa) initn: 871 init1: 871 opt: 871 Z-score: 889.9 bits: 171.5 E(85289): 7.9e-43 Smith-Waterman score: 871; 75.1% identity (94.8% similar) in 173 aa overlap (38-210:13-185) 10 20 30 40 50 60 pF1KB6 PRPHPGEGAAAAQAGGPAPPARAGEPSGLRLQEPSLYTIKAVFILDNDGRRLLAKYYDDT ::::::::.::..:::::: ::.::::::: NP_001 MGGFRTEGMFVSLQEPSLYTVKAILILDNDGDRLFAKYYDDT 10 20 30 40 70 80 90 100 110 120 pF1KB6 FPSMKEQMVFEKNVFNKTSRTESEIAFFGGMTIVYKNSIDLFLYVVGSSYENELMLMSVL .::.::: .::::.:::: ::.::::.. :.:.:::.::::..::.:::::::::::.:: NP_001 YPSVKEQKAFEKNIFNKTHRTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVL 50 60 70 80 90 100 130 140 150 160 170 180 pF1KB6 TCLFESLNHMLRKNVEKRWLLENMDGAFLVLDEIVDGGVILESDPQQVIQKVNFRADDGG .:::.::..::::::::: :::::.: ::..:::::::::::::::::...: .:..: NP_001 NCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRGEDVP 110 120 130 140 150 160 190 200 210 pF1KB6 LTEQSVAQVLQSAKEQIKWSLLK ::::.:.:::::::::::::::. NP_001 LTEQTVSQVLQSAKEQIKWSLLR 170 180 >>NP_057141 (OMIM: 615472) coatomer subunit zeta-1 isofo (177 aa) initn: 873 init1: 859 opt: 859 Z-score: 878.1 bits: 169.2 E(85289): 3.6e-42 Smith-Waterman score: 859; 74.9% identity (94.7% similar) in 171 aa overlap (40-210:7-177) 10 20 30 40 50 60 pF1KB6 PHPGEGAAAAQAGGPAPPARAGEPSGLRLQEPSLYTIKAVFILDNDGRRLLAKYYDDTFP ::::::.::..:::::: ::.:::::::.: NP_057 MEALILEPSLYTVKAILILDNDGDRLFAKYYDDTYP 10 20 30 70 80 90 100 110 120 pF1KB6 SMKEQMVFEKNVFNKTSRTESEIAFFGGMTIVYKNSIDLFLYVVGSSYENELMLMSVLTC :.::: .::::.:::: ::.::::.. :.:.:::.::::..::.:::::::::::.::.: NP_057 SVKEQKAFEKNIFNKTHRTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNC 40 50 60 70 80 90 130 140 150 160 170 180 pF1KB6 LFESLNHMLRKNVEKRWLLENMDGAFLVLDEIVDGGVILESDPQQVIQKVNFRADDGGLT ::.::..::::::::: :::::.: ::..:::::::::::::::::...: .:..: :: NP_057 LFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRGEDVPLT 100 110 120 130 140 150 190 200 210 pF1KB6 EQSVAQVLQSAKEQIKWSLLK ::.:.:::::::::::::::. NP_057 EQTVSQVLQSAKEQIKWSLLR 160 170 >>NP_001258663 (OMIM: 615472) coatomer subunit zeta-1 is (154 aa) initn: 751 init1: 737 opt: 738 Z-score: 757.2 bits: 146.7 E(85289): 1.9e-35 Smith-Waterman score: 738; 73.5% identity (93.4% similar) in 151 aa overlap (60-210:4-154) 30 40 50 60 70 80 pF1KB6 AGEPSGLRLQEPSLYTIKAVFILDNDGRRLLAKYYDDTFPSMKEQMVFEKNVFNKTSRTE : :::::.::.::: .::::.:::: ::. NP_001 MEALILYYDDTYPSVKEQKAFEKNIFNKTHRTD 10 20 30 90 100 110 120 130 140 pF1KB6 SEIAFFGGMTIVYKNSIDLFLYVVGSSYENELMLMSVLTCLFESLNHMLRKNVEKRWLLE ::::.. :.:.:::.::::..::.:::::::::::.::.:::.::..::::::::: ::: NP_001 SEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLE 40 50 60 70 80 90 150 160 170 180 190 200 pF1KB6 NMDGAFLVLDEIVDGGVILESDPQQVIQKVNFRADDGGLTEQSVAQVLQSAKEQIKWSLL ::.: ::..:::::::::::::::::...: .:..: ::::.:.::::::::::::::: NP_001 NMEGLFLAVDEIVDGGVILESDPQQVVHRVALRGEDVPLTEQTVSQVLQSAKEQIKWSLL 100 110 120 130 140 150 210 pF1KB6 K . NP_001 R >>XP_016874486 (OMIM: 615472) PREDICTED: coatomer subuni (180 aa) initn: 727 init1: 727 opt: 727 Z-score: 745.1 bits: 144.7 E(85289): 9.2e-35 Smith-Waterman score: 727; 74.8% identity (95.1% similar) in 143 aa overlap (40-182:7-149) 10 20 30 40 50 60 pF1KB6 PHPGEGAAAAQAGGPAPPARAGEPSGLRLQEPSLYTIKAVFILDNDGRRLLAKYYDDTFP ::::::.::..:::::: ::.:::::::.: XP_016 MEALILEPSLYTVKAILILDNDGDRLFAKYYDDTYP 10 20 30 70 80 90 100 110 120 pF1KB6 SMKEQMVFEKNVFNKTSRTESEIAFFGGMTIVYKNSIDLFLYVVGSSYENELMLMSVLTC :.::: .::::.:::: ::.::::.. :.:.:::.::::..::.:::::::::::.::.: XP_016 SVKEQKAFEKNIFNKTHRTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNC 40 50 60 70 80 90 130 140 150 160 170 180 pF1KB6 LFESLNHMLRKNVEKRWLLENMDGAFLVLDEIVDGGVILESDPQQVIQKVNFRADDGGLT ::.::..::::::::: :::::.: ::..:::::::::::::::::...: .: XP_016 LFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRVSKNVFL 100 110 120 130 140 150 190 200 210 pF1KB6 EQSVAQVLQSAKEQIKWSLLK XP_016 CIPASIHKHPPEPDLLDVSSSWGS 160 170 180 >>NP_001258664 (OMIM: 615472) coatomer subunit zeta-1 is (160 aa) initn: 796 init1: 720 opt: 720 Z-score: 738.8 bits: 143.3 E(85289): 2.1e-34 Smith-Waterman score: 761; 69.6% identity (86.5% similar) in 171 aa overlap (40-210:7-160) 10 20 30 40 50 60 pF1KB6 PHPGEGAAAAQAGGPAPPARAGEPSGLRLQEPSLYTIKAVFILDNDGRRLLAKYYDDTFP ::::::.::..:::::: ::.:::::::.: NP_001 MEALILEPSLYTVKAILILDNDGDRLFAKYYDDTYP 10 20 30 70 80 90 100 110 120 pF1KB6 SMKEQMVFEKNVFNKTSRTESEIAFFGGMTIVYKNSIDLFLYVVGSSYENELMLMSVLTC :.::: .::::.:::: ::.::::.. :.:.:::.::::..::.:::::::::::.::.: NP_001 SVKEQKAFEKNIFNKTHRTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNC 40 50 60 70 80 90 130 140 150 160 170 180 pF1KB6 LFESLNHMLRKNVEKRWLLENMDGAFLVLDEIVDGGVILESDPQQVIQKVNFRADDGGLT ::.::..::::::::: :::::.: ::..:::::::::::::::::...: NP_001 LFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRV---------- 100 110 120 130 140 190 200 210 pF1KB6 EQSVAQVLQSAKEQIKWSLLK :::::::::::::. NP_001 -------LQSAKEQIKWSLLR 150 160 >>XP_016864513 (OMIM: 601507) PREDICTED: AP-3 complex su (262 aa) initn: 123 init1: 75 opt: 204 Z-score: 216.2 bits: 47.3 E(85289): 2.6e-05 Smith-Waterman score: 218; 26.5% identity (58.3% similar) in 223 aa overlap (2-202:47-260) 10 20 30 pF1KB6 MQRPEAWPRPHPGEGAAAAQAGGPAPPARAG : : ::: : : ..::: . :: XP_016 VSVLGRMRTLQLGRWLGPRNVSAFLSACPAQAPPLGPRPTARE-RARSRAGGGGWGRIAG 20 30 40 50 60 70 40 50 60 70 pF1KB6 EPS--GLRLQ----------EPSLYTIKAVFILDNDGRRLLAKYYDDTFPSMKEQMVFEK : . : : . .:. :::..:..: :. :.:.:. . ..:.. . XP_016 EITRRGSRARPRPGPQCPPGRPGTAMIKAILIFNNHGKPRLSKFYQPYSEDTQQQII--R 80 90 100 110 120 130 80 90 100 110 120 pF1KB6 NVFNKTSRTESEIAFF--GGMTI-------VYKNSIDL-FLYVVGSSYENELMLMSVLTC ..:. .:. . .. : ::. : .:.. : :.. : :: :.:: ..... XP_016 ETFHLVSKRDENVCNFLEGGLLIGGSDNKLIYRHYATLYFVFCVDSS-ESELGILDLIQV 140 150 160 170 180 190 130 140 150 160 170 180 pF1KB6 LFESLNHMLRKNVEKRWLLENMDGAFLVLDEIVDGGVILESDPQQVIQKVNFRADDGGLT . :.:.. . .:: . :. ..: . .: :.: ::..::.. .... .. : . XP_016 FVETLDKCF-ENVCELDLIFHVDKVHNILAEMVMGGMVLETNMNEIVTQI----DAQNKL 200 210 220 230 240 190 200 210 pF1KB6 EQSVAQVLQSAKEQIKWSLLK :.: . ..:: .. XP_016 EKSETFIFQSPRQDR 250 260 >>XP_011541438 (OMIM: 601507) PREDICTED: AP-3 complex su (262 aa) initn: 123 init1: 75 opt: 204 Z-score: 216.2 bits: 47.3 E(85289): 2.6e-05 Smith-Waterman score: 218; 26.5% identity (58.3% similar) in 223 aa overlap (2-202:47-260) 10 20 30 pF1KB6 MQRPEAWPRPHPGEGAAAAQAGGPAPPARAG : : ::: : : ..::: . :: XP_011 VSVLGRMRTLQLGRWLGPRNVSAFLSACPAQAPPLGPRPTARE-RARSRAGGGGWGRIAG 20 30 40 50 60 70 40 50 60 70 pF1KB6 EPS--GLRLQ----------EPSLYTIKAVFILDNDGRRLLAKYYDDTFPSMKEQMVFEK : . : : . .:. :::..:..: :. :.:.:. . ..:.. . XP_011 EITRRGSRARPRPGPQCPPGRPGTAMIKAILIFNNHGKPRLSKFYQPYSEDTQQQII--R 80 90 100 110 120 130 80 90 100 110 120 pF1KB6 NVFNKTSRTESEIAFF--GGMTI-------VYKNSIDL-FLYVVGSSYENELMLMSVLTC ..:. .:. . .. : ::. : .:.. : :.. : :: :.:: ..... XP_011 ETFHLVSKRDENVCNFLEGGLLIGGSDNKLIYRHYATLYFVFCVDSS-ESELGILDLIQV 140 150 160 170 180 190 130 140 150 160 170 180 pF1KB6 LFESLNHMLRKNVEKRWLLENMDGAFLVLDEIVDGGVILESDPQQVIQKVNFRADDGGLT . :.:.. . .:: . :. ..: . .: :.: ::..::.. .... .. : . XP_011 FVETLDKCF-ENVCELDLIFHVDKVHNILAEMVMGGMVLETNMNEIVTQI----DAQNKL 200 210 220 230 240 190 200 210 pF1KB6 EQSVAQVLQSAKEQIKWSLLK :.: . ..:: .. XP_011 EKSETFIFQSPRQDR 250 260 >>NP_001305022 (OMIM: 601507) AP-3 complex subunit sigma (162 aa) initn: 75 init1: 75 opt: 193 Z-score: 208.2 bits: 45.2 E(85289): 7.3e-05 Smith-Waterman score: 193; 25.7% identity (64.1% similar) in 167 aa overlap (46-202:2-160) 20 30 40 50 60 70 pF1KB6 AAAAQAGGPAPPARAGEPSGLRLQEPSLYTIKAVFILDNDGRRLLAKYYDDTFPSMKEQM :::..:..: :. :.:.:. . ..:. NP_001 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQI 10 20 30 80 90 100 110 120 pF1KB6 VFEKNVFNKTSRTESEIAFF--GGMTI-------VYKNSIDL-FLYVVGSSYENELMLMS . ...:. .:. . .. : ::. : .:.. : :.. : :: :.:: ... NP_001 I--RETFHLVSKRDENVCNFLEGGLLIGGSDNKLIYRHYATLYFVFCVDSS-ESELGILD 40 50 60 70 80 130 140 150 160 170 180 pF1KB6 VLTCLFESLNHMLRKNVEKRWLLENMDGAFLVLDEIVDGGVILESDPQQVIQKVNFRADD .. . :.:.. . .:: . :. ..: . .: :.: ::..::.. .... .. : NP_001 LIQVFVETLDKCF-ENVCELDLIFHVDKVHNILAEMVMGGMVLETNMNEIVTQI----DA 90 100 110 120 130 140 190 200 210 pF1KB6 GGLTEQSVAQVLQSAKEQIKWSLLK . :.: . ..:: .. NP_001 QNKLEKSETFIFQSPRQDR 150 160 210 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 01:14:26 2016 done: Mon Nov 7 01:14:28 2016 Total Scan time: 6.800 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]