FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB6937, 210 aa 1>>>pF1KB6937 210 - 210 aa - 210 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.0905+/-0.000732; mu= 12.4152+/- 0.045 mean_var=103.6176+/-20.720, 0's: 0 Z-trim(112.8): 17 B-trim: 0 in 0/52 Lambda= 0.125996 statistics sampled from 13474 (13489) to 13474 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.759), E-opt: 0.2 (0.414), width: 16 Scan time: 2.290 The best scores are: opt bits E(32554) CCDS74092.1 COPZ2 gene_id:51226|Hs108|chr17 ( 210) 1384 260.9 4.1e-70 CCDS61139.1 COPZ1 gene_id:22818|Hs108|chr12 ( 185) 871 167.6 4.3e-42 CCDS8877.1 COPZ1 gene_id:22818|Hs108|chr12 ( 177) 859 165.4 1.9e-41 CCDS61138.1 COPZ1 gene_id:22818|Hs108|chr12 ( 154) 738 143.4 7.2e-35 CCDS61137.1 COPZ1 gene_id:22818|Hs108|chr12 ( 160) 720 140.1 7.1e-34 >>CCDS74092.1 COPZ2 gene_id:51226|Hs108|chr17 (210 aa) initn: 1384 init1: 1384 opt: 1384 Z-score: 1372.3 bits: 260.9 E(32554): 4.1e-70 Smith-Waterman score: 1384; 100.0% identity (100.0% similar) in 210 aa overlap (1-210:1-210) 10 20 30 40 50 60 pF1KB6 MQRPEAWPRPHPGEGAAAAQAGGPAPPARAGEPSGLRLQEPSLYTIKAVFILDNDGRRLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 MQRPEAWPRPHPGEGAAAAQAGGPAPPARAGEPSGLRLQEPSLYTIKAVFILDNDGRRLL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 AKYYDDTFPSMKEQMVFEKNVFNKTSRTESEIAFFGGMTIVYKNSIDLFLYVVGSSYENE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 AKYYDDTFPSMKEQMVFEKNVFNKTSRTESEIAFFGGMTIVYKNSIDLFLYVVGSSYENE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB6 LMLMSVLTCLFESLNHMLRKNVEKRWLLENMDGAFLVLDEIVDGGVILESDPQQVIQKVN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 LMLMSVLTCLFESLNHMLRKNVEKRWLLENMDGAFLVLDEIVDGGVILESDPQQVIQKVN 130 140 150 160 170 180 190 200 210 pF1KB6 FRADDGGLTEQSVAQVLQSAKEQIKWSLLK :::::::::::::::::::::::::::::: CCDS74 FRADDGGLTEQSVAQVLQSAKEQIKWSLLK 190 200 210 >>CCDS61139.1 COPZ1 gene_id:22818|Hs108|chr12 (185 aa) initn: 871 init1: 871 opt: 871 Z-score: 869.1 bits: 167.6 E(32554): 4.3e-42 Smith-Waterman score: 871; 75.1% identity (94.8% similar) in 173 aa overlap (38-210:13-185) 10 20 30 40 50 60 pF1KB6 PRPHPGEGAAAAQAGGPAPPARAGEPSGLRLQEPSLYTIKAVFILDNDGRRLLAKYYDDT ::::::::.::..:::::: ::.::::::: CCDS61 MGGFRTEGMFVSLQEPSLYTVKAILILDNDGDRLFAKYYDDT 10 20 30 40 70 80 90 100 110 120 pF1KB6 FPSMKEQMVFEKNVFNKTSRTESEIAFFGGMTIVYKNSIDLFLYVVGSSYENELMLMSVL .::.::: .::::.:::: ::.::::.. :.:.:::.::::..::.:::::::::::.:: CCDS61 YPSVKEQKAFEKNIFNKTHRTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVL 50 60 70 80 90 100 130 140 150 160 170 180 pF1KB6 TCLFESLNHMLRKNVEKRWLLENMDGAFLVLDEIVDGGVILESDPQQVIQKVNFRADDGG .:::.::..::::::::: :::::.: ::..:::::::::::::::::...: .:..: CCDS61 NCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRGEDVP 110 120 130 140 150 160 190 200 210 pF1KB6 LTEQSVAQVLQSAKEQIKWSLLK ::::.:.:::::::::::::::. CCDS61 LTEQTVSQVLQSAKEQIKWSLLR 170 180 >>CCDS8877.1 COPZ1 gene_id:22818|Hs108|chr12 (177 aa) initn: 873 init1: 859 opt: 859 Z-score: 857.6 bits: 165.4 E(32554): 1.9e-41 Smith-Waterman score: 859; 74.9% identity (94.7% similar) in 171 aa overlap (40-210:7-177) 10 20 30 40 50 60 pF1KB6 PHPGEGAAAAQAGGPAPPARAGEPSGLRLQEPSLYTIKAVFILDNDGRRLLAKYYDDTFP ::::::.::..:::::: ::.:::::::.: CCDS88 MEALILEPSLYTVKAILILDNDGDRLFAKYYDDTYP 10 20 30 70 80 90 100 110 120 pF1KB6 SMKEQMVFEKNVFNKTSRTESEIAFFGGMTIVYKNSIDLFLYVVGSSYENELMLMSVLTC :.::: .::::.:::: ::.::::.. :.:.:::.::::..::.:::::::::::.::.: CCDS88 SVKEQKAFEKNIFNKTHRTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNC 40 50 60 70 80 90 130 140 150 160 170 180 pF1KB6 LFESLNHMLRKNVEKRWLLENMDGAFLVLDEIVDGGVILESDPQQVIQKVNFRADDGGLT ::.::..::::::::: :::::.: ::..:::::::::::::::::...: .:..: :: CCDS88 LFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRGEDVPLT 100 110 120 130 140 150 190 200 210 pF1KB6 EQSVAQVLQSAKEQIKWSLLK ::.:.:::::::::::::::. CCDS88 EQTVSQVLQSAKEQIKWSLLR 160 170 >>CCDS61138.1 COPZ1 gene_id:22818|Hs108|chr12 (154 aa) initn: 751 init1: 737 opt: 738 Z-score: 739.5 bits: 143.4 E(32554): 7.2e-35 Smith-Waterman score: 738; 73.5% identity (93.4% similar) in 151 aa overlap (60-210:4-154) 30 40 50 60 70 80 pF1KB6 AGEPSGLRLQEPSLYTIKAVFILDNDGRRLLAKYYDDTFPSMKEQMVFEKNVFNKTSRTE : :::::.::.::: .::::.:::: ::. CCDS61 MEALILYYDDTYPSVKEQKAFEKNIFNKTHRTD 10 20 30 90 100 110 120 130 140 pF1KB6 SEIAFFGGMTIVYKNSIDLFLYVVGSSYENELMLMSVLTCLFESLNHMLRKNVEKRWLLE ::::.. :.:.:::.::::..::.:::::::::::.::.:::.::..::::::::: ::: CCDS61 SEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLE 40 50 60 70 80 90 150 160 170 180 190 200 pF1KB6 NMDGAFLVLDEIVDGGVILESDPQQVIQKVNFRADDGGLTEQSVAQVLQSAKEQIKWSLL ::.: ::..:::::::::::::::::...: .:..: ::::.:.::::::::::::::: CCDS61 NMEGLFLAVDEIVDGGVILESDPQQVVHRVALRGEDVPLTEQTVSQVLQSAKEQIKWSLL 100 110 120 130 140 150 210 pF1KB6 K . CCDS61 R >>CCDS61137.1 COPZ1 gene_id:22818|Hs108|chr12 (160 aa) initn: 796 init1: 720 opt: 720 Z-score: 721.6 bits: 140.1 E(32554): 7.1e-34 Smith-Waterman score: 761; 69.6% identity (86.5% similar) in 171 aa overlap (40-210:7-160) 10 20 30 40 50 60 pF1KB6 PHPGEGAAAAQAGGPAPPARAGEPSGLRLQEPSLYTIKAVFILDNDGRRLLAKYYDDTFP ::::::.::..:::::: ::.:::::::.: CCDS61 MEALILEPSLYTVKAILILDNDGDRLFAKYYDDTYP 10 20 30 70 80 90 100 110 120 pF1KB6 SMKEQMVFEKNVFNKTSRTESEIAFFGGMTIVYKNSIDLFLYVVGSSYENELMLMSVLTC :.::: .::::.:::: ::.::::.. :.:.:::.::::..::.:::::::::::.::.: CCDS61 SVKEQKAFEKNIFNKTHRTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNC 40 50 60 70 80 90 130 140 150 160 170 180 pF1KB6 LFESLNHMLRKNVEKRWLLENMDGAFLVLDEIVDGGVILESDPQQVIQKVNFRADDGGLT ::.::..::::::::: :::::.: ::..:::::::::::::::::...: CCDS61 LFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRV---------- 100 110 120 130 140 190 200 210 pF1KB6 EQSVAQVLQSAKEQIKWSLLK :::::::::::::. CCDS61 -------LQSAKEQIKWSLLR 150 160 210 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 01:14:26 2016 done: Mon Nov 7 01:14:26 2016 Total Scan time: 2.290 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]