FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5307, 270 aa 1>>>pF1KE5307 270 - 270 aa - 270 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.1398+/-0.000287; mu= 13.2118+/- 0.018 mean_var=117.5334+/-23.548, 0's: 0 Z-trim(121.5): 18 B-trim: 1155 in 2/53 Lambda= 0.118302 statistics sampled from 38199 (38220) to 38199 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.79), E-opt: 0.2 (0.448), width: 16 Scan time: 6.300 The best scores are: opt bits E(85289) NP_006518 (OMIM: 602422) histone RNA hairpin-bindi ( 270) 1885 331.7 8.5e-91 NP_001293004 (OMIM: 602422) histone RNA hairpin-bi ( 231) 1446 256.8 2.7e-68 NP_001293003 (OMIM: 602422) histone RNA hairpin-bi ( 235) 1224 218.9 7e-57 >>NP_006518 (OMIM: 602422) histone RNA hairpin-binding p (270 aa) initn: 1885 init1: 1885 opt: 1885 Z-score: 1751.1 bits: 331.7 E(85289): 8.5e-91 Smith-Waterman score: 1885; 100.0% identity (100.0% similar) in 270 aa overlap (1-270:1-270) 10 20 30 40 50 60 pF1KE5 MACRPRSPPRHQSRCDGDASPPSPARWSLGRKRRADGRRWRPEDAEEAEHRGAERRPESF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 MACRPRSPPRHQSRCDGDASPPSPARWSLGRKRRADGRRWRPEDAEEAEHRGAERRPESF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 TTPEGPKPRSRCSDWASAVEEDEMRTRVNKEMARYKRKLLINDFGRERKSSSGSSDSKES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 TTPEGPKPRSRCSDWASAVEEDEMRTRVNKEMARYKRKLLINDFGRERKSSSGSSDSKES 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 MSTVPADFETDESVLMRRQKQINYGKNTIAYDRYIKEVPRHLRQPGIHPKTPNKFKKYSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 MSTVPADFETDESVLMRRQKQINYGKNTIAYDRYIKEVPRHLRQPGIHPKTPNKFKKYSR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 RSWDQQIKLWKVALHFWDPPAEEGCDLQEIHPVDLESAESSSEPQTSSQDDFDVYSGTPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 RSWDQQIKLWKVALHFWDPPAEEGCDLQEIHPVDLESAESSSEPQTSSQDDFDVYSGTPT 190 200 210 220 230 240 250 260 270 pF1KE5 KVRHMDSQVEDEFDLEACLTEPLRDFSAMS :::::::::::::::::::::::::::::: NP_006 KVRHMDSQVEDEFDLEACLTEPLRDFSAMS 250 260 270 >>NP_001293004 (OMIM: 602422) histone RNA hairpin-bindin (231 aa) initn: 1446 init1: 1446 opt: 1446 Z-score: 1347.0 bits: 256.8 E(85289): 2.7e-68 Smith-Waterman score: 1510; 85.6% identity (85.6% similar) in 270 aa overlap (1-270:1-231) 10 20 30 40 50 60 pF1KE5 MACRPRSPPRHQSRCDGDASPPSPARWSLGRKRRADGRRWRPEDAEEAEHRGAERRPESF :::::::::::::::::::: : NP_001 MACRPRSPPRHQSRCDGDAS---------------------------------------F 10 20 70 80 90 100 110 120 pF1KE5 TTPEGPKPRSRCSDWASAVEEDEMRTRVNKEMARYKRKLLINDFGRERKSSSGSSDSKES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TTPEGPKPRSRCSDWASAVEEDEMRTRVNKEMARYKRKLLINDFGRERKSSSGSSDSKES 30 40 50 60 70 80 130 140 150 160 170 180 pF1KE5 MSTVPADFETDESVLMRRQKQINYGKNTIAYDRYIKEVPRHLRQPGIHPKTPNKFKKYSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MSTVPADFETDESVLMRRQKQINYGKNTIAYDRYIKEVPRHLRQPGIHPKTPNKFKKYSR 90 100 110 120 130 140 190 200 210 220 230 240 pF1KE5 RSWDQQIKLWKVALHFWDPPAEEGCDLQEIHPVDLESAESSSEPQTSSQDDFDVYSGTPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RSWDQQIKLWKVALHFWDPPAEEGCDLQEIHPVDLESAESSSEPQTSSQDDFDVYSGTPT 150 160 170 180 190 200 250 260 270 pF1KE5 KVRHMDSQVEDEFDLEACLTEPLRDFSAMS :::::::::::::::::::::::::::::: NP_001 KVRHMDSQVEDEFDLEACLTEPLRDFSAMS 210 220 230 >>NP_001293003 (OMIM: 602422) histone RNA hairpin-bindin (235 aa) initn: 1232 init1: 1205 opt: 1224 Z-score: 1142.2 bits: 218.9 E(85289): 7e-57 Smith-Waterman score: 1564; 87.0% identity (87.0% similar) in 270 aa overlap (1-270:1-235) 10 20 30 40 50 60 pF1KE5 MACRPRSPPRHQSRCDGDASPPSPARWSLGRKRRADGRRWRPEDAEEAEHRGAERRPESF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MACRPRSPPRHQSRCDGDASPPSPARWSLGRKRRADGRRWRPEDAEEAEHRGAERRPE-- 10 20 30 40 50 70 80 90 100 110 120 pF1KE5 TTPEGPKPRSRCSDWASAVEEDEMRTRVNKEMARYKRKLLINDFGRERKSSSGSSDSKES ::::::::::::::::::::::::::: NP_001 ---------------------------------RYKRKLLINDFGRERKSSSGSSDSKES 60 70 80 130 140 150 160 170 180 pF1KE5 MSTVPADFETDESVLMRRQKQINYGKNTIAYDRYIKEVPRHLRQPGIHPKTPNKFKKYSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MSTVPADFETDESVLMRRQKQINYGKNTIAYDRYIKEVPRHLRQPGIHPKTPNKFKKYSR 90 100 110 120 130 140 190 200 210 220 230 240 pF1KE5 RSWDQQIKLWKVALHFWDPPAEEGCDLQEIHPVDLESAESSSEPQTSSQDDFDVYSGTPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RSWDQQIKLWKVALHFWDPPAEEGCDLQEIHPVDLESAESSSEPQTSSQDDFDVYSGTPT 150 160 170 180 190 200 250 260 270 pF1KE5 KVRHMDSQVEDEFDLEACLTEPLRDFSAMS :::::::::::::::::::::::::::::: NP_001 KVRHMDSQVEDEFDLEACLTEPLRDFSAMS 210 220 230 270 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 23:41:19 2016 done: Mon Nov 7 23:41:20 2016 Total Scan time: 6.300 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]