FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5307, 270 aa 1>>>pF1KE5307 270 - 270 aa - 270 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.2601+/-0.000678; mu= 12.4317+/- 0.041 mean_var=113.4294+/-22.390, 0's: 0 Z-trim(114.2): 17 B-trim: 2 in 1/51 Lambda= 0.120424 statistics sampled from 14755 (14771) to 14755 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.792), E-opt: 0.2 (0.454), width: 16 Scan time: 1.670 The best scores are: opt bits E(32554) CCDS3350.1 SLBP gene_id:7884|Hs108|chr4 ( 270) 1885 337.4 6.6e-93 CCDS82903.1 SLBP gene_id:7884|Hs108|chr4 ( 231) 1446 261.0 5.3e-70 CCDS77889.1 SLBP gene_id:7884|Hs108|chr4 ( 235) 1224 222.5 2.2e-58 >>CCDS3350.1 SLBP gene_id:7884|Hs108|chr4 (270 aa) initn: 1885 init1: 1885 opt: 1885 Z-score: 1781.5 bits: 337.4 E(32554): 6.6e-93 Smith-Waterman score: 1885; 100.0% identity (100.0% similar) in 270 aa overlap (1-270:1-270) 10 20 30 40 50 60 pF1KE5 MACRPRSPPRHQSRCDGDASPPSPARWSLGRKRRADGRRWRPEDAEEAEHRGAERRPESF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 MACRPRSPPRHQSRCDGDASPPSPARWSLGRKRRADGRRWRPEDAEEAEHRGAERRPESF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 TTPEGPKPRSRCSDWASAVEEDEMRTRVNKEMARYKRKLLINDFGRERKSSSGSSDSKES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 TTPEGPKPRSRCSDWASAVEEDEMRTRVNKEMARYKRKLLINDFGRERKSSSGSSDSKES 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 MSTVPADFETDESVLMRRQKQINYGKNTIAYDRYIKEVPRHLRQPGIHPKTPNKFKKYSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 MSTVPADFETDESVLMRRQKQINYGKNTIAYDRYIKEVPRHLRQPGIHPKTPNKFKKYSR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 RSWDQQIKLWKVALHFWDPPAEEGCDLQEIHPVDLESAESSSEPQTSSQDDFDVYSGTPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 RSWDQQIKLWKVALHFWDPPAEEGCDLQEIHPVDLESAESSSEPQTSSQDDFDVYSGTPT 190 200 210 220 230 240 250 260 270 pF1KE5 KVRHMDSQVEDEFDLEACLTEPLRDFSAMS :::::::::::::::::::::::::::::: CCDS33 KVRHMDSQVEDEFDLEACLTEPLRDFSAMS 250 260 270 >>CCDS82903.1 SLBP gene_id:7884|Hs108|chr4 (231 aa) initn: 1446 init1: 1446 opt: 1446 Z-score: 1370.2 bits: 261.0 E(32554): 5.3e-70 Smith-Waterman score: 1510; 85.6% identity (85.6% similar) in 270 aa overlap (1-270:1-231) 10 20 30 40 50 60 pF1KE5 MACRPRSPPRHQSRCDGDASPPSPARWSLGRKRRADGRRWRPEDAEEAEHRGAERRPESF :::::::::::::::::::: : CCDS82 MACRPRSPPRHQSRCDGDAS---------------------------------------F 10 20 70 80 90 100 110 120 pF1KE5 TTPEGPKPRSRCSDWASAVEEDEMRTRVNKEMARYKRKLLINDFGRERKSSSGSSDSKES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 TTPEGPKPRSRCSDWASAVEEDEMRTRVNKEMARYKRKLLINDFGRERKSSSGSSDSKES 30 40 50 60 70 80 130 140 150 160 170 180 pF1KE5 MSTVPADFETDESVLMRRQKQINYGKNTIAYDRYIKEVPRHLRQPGIHPKTPNKFKKYSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 MSTVPADFETDESVLMRRQKQINYGKNTIAYDRYIKEVPRHLRQPGIHPKTPNKFKKYSR 90 100 110 120 130 140 190 200 210 220 230 240 pF1KE5 RSWDQQIKLWKVALHFWDPPAEEGCDLQEIHPVDLESAESSSEPQTSSQDDFDVYSGTPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 RSWDQQIKLWKVALHFWDPPAEEGCDLQEIHPVDLESAESSSEPQTSSQDDFDVYSGTPT 150 160 170 180 190 200 250 260 270 pF1KE5 KVRHMDSQVEDEFDLEACLTEPLRDFSAMS :::::::::::::::::::::::::::::: CCDS82 KVRHMDSQVEDEFDLEACLTEPLRDFSAMS 210 220 230 >>CCDS77889.1 SLBP gene_id:7884|Hs108|chr4 (235 aa) initn: 1232 init1: 1205 opt: 1224 Z-score: 1161.7 bits: 222.5 E(32554): 2.2e-58 Smith-Waterman score: 1564; 87.0% identity (87.0% similar) in 270 aa overlap (1-270:1-235) 10 20 30 40 50 60 pF1KE5 MACRPRSPPRHQSRCDGDASPPSPARWSLGRKRRADGRRWRPEDAEEAEHRGAERRPESF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 MACRPRSPPRHQSRCDGDASPPSPARWSLGRKRRADGRRWRPEDAEEAEHRGAERRPE-- 10 20 30 40 50 70 80 90 100 110 120 pF1KE5 TTPEGPKPRSRCSDWASAVEEDEMRTRVNKEMARYKRKLLINDFGRERKSSSGSSDSKES ::::::::::::::::::::::::::: CCDS77 ---------------------------------RYKRKLLINDFGRERKSSSGSSDSKES 60 70 80 130 140 150 160 170 180 pF1KE5 MSTVPADFETDESVLMRRQKQINYGKNTIAYDRYIKEVPRHLRQPGIHPKTPNKFKKYSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 MSTVPADFETDESVLMRRQKQINYGKNTIAYDRYIKEVPRHLRQPGIHPKTPNKFKKYSR 90 100 110 120 130 140 190 200 210 220 230 240 pF1KE5 RSWDQQIKLWKVALHFWDPPAEEGCDLQEIHPVDLESAESSSEPQTSSQDDFDVYSGTPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 RSWDQQIKLWKVALHFWDPPAEEGCDLQEIHPVDLESAESSSEPQTSSQDDFDVYSGTPT 150 160 170 180 190 200 250 260 270 pF1KE5 KVRHMDSQVEDEFDLEACLTEPLRDFSAMS :::::::::::::::::::::::::::::: CCDS77 KVRHMDSQVEDEFDLEACLTEPLRDFSAMS 210 220 230 270 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 23:41:18 2016 done: Mon Nov 7 23:41:19 2016 Total Scan time: 1.670 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]