FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3941, 587 aa
  1>>>pF1KE3941 587 - 587 aa - 587 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.1279+/-0.00085; mu= 7.4533+/- 0.051
 mean_var=176.6563+/-37.128, 0's: 0 Z-trim(113.2): 121  B-trim: 2 in 1/51
 Lambda= 0.096496
 statistics sampled from 13719 (13845) to 13719 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.747), E-opt: 0.2 (0.425), width:  16
 Scan time:  4.150

The best scores are:                                      opt bits E(32554)
CCDS6993.1 NACC2 gene_id:138151|Hs108|chr9         ( 587) 3912 556.8 2.7e-158
CCDS12294.1 NACC1 gene_id:112939|Hs108|chr19       ( 527) 1020 154.2 3.9e-37


>>CCDS6993.1 NACC2 gene_id:138151|Hs108|chr9              (587 aa)
 initn: 3912 init1: 3912 opt: 3912  Z-score: 2955.4  bits: 556.8 E(32554): 2.7e-158
Smith-Waterman score: 3912; 100.0% identity (100.0% similar) in 587 aa overlap (1-587:1-587)

               10        20        30        40        50        60
pF1KE3 MSQMLHIEIPNFGNTVLGCLNEQRLLGLYCDVSIVVKGQAFKAHRAVLAASSLYFRDLFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 MSQMLHIEIPNFGNTVLGCLNEQRLLGLYCDVSIVVKGQAFKAHRAVLAASSLYFRDLFS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 GNSKSAFELPGSVPPACFQQILSFCYTGRLTMTASEQLVVMYTAGFLQIQHIVERGTDLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 GNSKSAFELPGSVPPACFQQILSFCYTGRLTMTASEQLVVMYTAGFLQIQHIVERGTDLM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 FKVSSPHCDSQTAVIEDAGSEPQSPCNQLQPAAAAAAPYVVSPSVPIPLLTRVKHEAMEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 FKVSSPHCDSQTAVIEDAGSEPQSPCNQLQPAAAAAAPYVVSPSVPIPLLTRVKHEAMEL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 PPAGPGLAPKRPLETGPRDGVAVAAGAAVAAGTAPLKLPRVSYYGVPSLATLIPGIQQMP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 PPAGPGLAPKRPLETGPRDGVAVAAGAAVAAGTAPLKLPRVSYYGVPSLATLIPGIQQMP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 YPQGERTSPGASSLPTTDSPTSYHNEEDEEDDEAYDTMVEEQYGQMYIKASGSYAVQEKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 YPQGERTSPGASSLPTTDSPTSYHNEEDEEDDEAYDTMVEEQYGQMYIKASGSYAVQEKP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 EPVPLESRSCVLIRRDLVALPASLISQIGYRCHPKLYSEGDPGEKLELVAGSGVYITRGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 EPVPLESRSCVLIRRDLVALPASLISQIGYRCHPKLYSEGDPGEKLELVAGSGVYITRGQ
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 LMNCHLCAGVKHKVLLRRLLATFFDRNTLANSCGTGIRSSTSDPSRKPLDSRVLNAVKLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 LMNCHLCAGVKHKVLLRRLLATFFDRNTLANSCGTGIRSSTSDPSRKPLDSRVLNAVKLY
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE3 CQNFAPSFKESEMNVIAADMCTNARRVRKRWLPKIKSMLPEGVEMYRTVMGSAAASVPLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 CQNFAPSFKESEMNVIAADMCTNARRVRKRWLPKIKSMLPEGVEMYRTVMGSAAASVPLD
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE3 PEFPPAAAQVFEQRIYAERRGDAATIVALRTDAVNVDLSAAANPAFDAGEEVDGAGSVIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 PEFPPAAAQVFEQRIYAERRGDAATIVALRTDAVNVDLSAAANPAFDAGEEVDGAGSVIQ
              490       500       510       520       530       540

              550       560       570       580       
pF1KE3 EVAAPEPLPADGQSPPQPFEQGGGGPSRPQTPAAAARRPEGTYAGTL
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 EVAAPEPLPADGQSPPQPFEQGGGGPSRPQTPAAAARRPEGTYAGTL
              550       560       570       580       

>>CCDS12294.1 NACC1 gene_id:112939|Hs108|chr19            (527 aa)
 initn: 1662 init1: 800 opt: 1020  Z-score: 780.2  bits: 154.2 E(32554): 3.9e-37
Smith-Waterman score: 1666; 56.6% identity (72.8% similar) in 523 aa overlap (1-478:1-501)

               10        20        30        40        50        60
pF1KE3 MSQMLHIEIPNFGNTVLGCLNEQRLLGLYCDVSIVVKGQAFKAHRAVLAASSLYFRDLFS
       :.: :..:::::::..: ::::::: :::::::.::::.::::::::::::: ::::::.
CCDS12 MAQTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFN
               10        20        30        40        50        60

                70        80        90       100       110         
pF1KE3 GNSKSAF-ELPGSVPPACFQQILSFCYTGRLTMTASEQLVVMYTAGFLQIQHIVERGTDL
        ::.::  :::..: :  :::::::::::::.:....:...::::::::::.:.:.::..
CCDS12 -NSRSAVVELPAAVQPQSFQQILSFCYTGRLSMNVGDQFLLMYTAGFLQIQEIMEKGTEF
                70        80        90       100       110         

     120       130        140       150       160       170        
pF1KE3 MFKVSSPHCDSQTAVIEDA-GSEPQSPCNQLQPAAAAAAPYVVSPSVPIPLLTRVKHEAM
       ..::::: ::::    :.: .::::::  : .   :         :.:.::..::: : .
CCDS12 FLKVSSPSCDSQGLHAEEAPSSEPQSPVAQTSGWPAC--------STPLPLVSRVKTEQQ
     120       130       140       150               160       170 

            180                                190       200       
pF1KE3 E------LP-----------PAG--------------PGLAPKRPLETGPRDGVAVAAGA
       :      .:            ::              : :: .:: .  : . . :.:.:
CCDS12 ESDSVQCMPVAKRLWDSGQKEAGGGGNGSRKMAKFSTPDLAANRPHQPPPPQQAPVVAAA
             180       190       200       210       220       230 

         210       220       230       240       250       260     
pF1KE3 --AVAAGTAPLKLPRVSYYGVPSLATLIPGIQQMPYPQGERTSPGASSLPTTDSPTSYHN
         :::::..    :     :: . . .. :    :   .::::::.::  :.::: ::::
CCDS12 QPAVAAGAGQ---PA---GGVAAAGGVVSG----P-STSERTSPGTSSAYTSDSPGSYHN
             240             250            260       270       280

         270       280          290             300       310      
pF1KE3 EEDEEDDEAYDTMVEEQYGQ---MYIKAS----GSYA--VQEKPEPVPLESRSCVLIRRD
       :::::.: . . : .::: :   ::   :    :. :  :.  :: :  :::. . .:.:
CCDS12 EEDEEEDGGEEGM-DEQYRQICNMYTMYSMMNVGQTAEKVEALPEQVAPESRNRIRVRQD
              290        300       310       320       330         

        320       330       340       350       360       370      
pF1KE3 LVALPASLISQIGYRCHPKLYSEGDPGEKLELVAGSGVYITRGQLMNCHLCAGVKHKVLL
       :..::: ::.::: :::::::.::::.::::::.:..:::::.::::::. ::..:::::
CCDS12 LASLPAELINQIGNRCHPKLYDEGDPSEKLELVTGTNVYITRAQLMNCHVSAGTRHKVLL
     340       350       360       370       380       390         

        380       390       400       410       420       430      
pF1KE3 RRLLATFFDRNTLANSCGTGIRSSTSDPSRKPLDSRVLNAVKLYCQNFAPSFKESEMNVI
       :::::.:::::::::::::::::::.:: :::::::::.::: :::::::.:::::::.:
CCDS12 RRLLASFFDRNTLANSCGTGIRSSTNDPRRKPLDSRVLHAVKYYCQNFAPNFKESEMNAI
     400       410       420       430       440       450         

        440        450       460       470       480       490     
pF1KE3 AADMCTNARRV-RKRWLPKIKSMLPEGVEMYRTVMGSAAASVPLDPEFPPAAAQVFEQRI
       ::::::::::: :: :.::.: .  :  . : : .. ..   :                 
CCDS12 AADMCTNARRVVRKSWMPKVKVLKAED-DAYTTFISETGKIEPDMMGVEHGFETASHEGE
     460       470       480        490       500       510        

         500       510       520       530       540       550     
pF1KE3 YAERRGDAATIVALRTDAVNVDLSAAANPAFDAGEEVDGAGSVIQEVAAPEPLPADGQSP
                                                                   
CCDS12 AGPSAEALQ                                                   
      520                                                          




587 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 08:44:55 2016 done: Sun Nov  6 08:44:56 2016
 Total Scan time:  4.150 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]