FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5116, 147 aa 1>>>pF1KE5116 147 - 147 aa - 147 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1079+/-0.000367; mu= 12.3397+/- 0.023 mean_var=58.2097+/-11.427, 0's: 0 Z-trim(113.9): 20 B-trim: 245 in 1/52 Lambda= 0.168103 statistics sampled from 23494 (23514) to 23494 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.672), E-opt: 0.2 (0.276), width: 16 Scan time: 4.470 The best scores are: opt bits E(85289) NP_005321 (OMIM: 142100) hemoglobin subunit epsilo ( 147) 968 242.7 1.6e-64 NP_000175 (OMIM: 141749,142250,613977) hemoglobin ( 147) 810 204.4 5.6e-53 NP_000550 (OMIM: 141749,142200) hemoglobin subunit ( 147) 809 204.1 6.6e-53 NP_000509 (OMIM: 140700,141749,141900,603902,60390 ( 147) 774 195.6 2.4e-50 NP_000510 (OMIM: 142000) hemoglobin subunit delta ( 147) 754 190.8 6.9e-49 XP_005255345 (OMIM: 142310) PREDICTED: hemoglobin ( 142) 357 94.5 6.4e-20 NP_005323 (OMIM: 142310) hemoglobin subunit zeta [ ( 142) 357 94.5 6.4e-20 XP_005255344 (OMIM: 142310) PREDICTED: hemoglobin ( 154) 357 94.5 6.9e-20 NP_001003938 (OMIM: 609639) hemoglobin subunit mu ( 141) 332 88.4 4.3e-18 NP_000549 (OMIM: 140700,141800,604131,613978) hemo ( 142) 332 88.4 4.3e-18 NP_000508 (OMIM: 140700,141850,604131,613978) hemo ( 142) 332 88.4 4.3e-18 NP_005322 (OMIM: 142240) hemoglobin subunit theta- ( 142) 318 85.0 4.5e-17 NP_599030 (OMIM: 608759) cytoglobin [Homo sapiens] ( 190) 259 70.8 1.2e-12 XP_005257062 (OMIM: 608759) PREDICTED: cytoglobin ( 202) 259 70.8 1.2e-12 NP_005359 (OMIM: 160000) myoglobin [Homo sapiens] ( 154) 171 49.4 2.6e-06 XP_005261662 (OMIM: 160000) PREDICTED: myoglobin i ( 154) 171 49.4 2.6e-06 NP_976311 (OMIM: 160000) myoglobin [Homo sapiens] ( 154) 171 49.4 2.6e-06 NP_976312 (OMIM: 160000) myoglobin [Homo sapiens] ( 154) 171 49.4 2.6e-06 XP_016879605 (OMIM: 608759) PREDICTED: cytoglobin ( 137) 169 48.9 3.3e-06 NP_067080 (OMIM: 605304) neuroglobin [Homo sapiens ( 151) 159 46.5 1.9e-05 >>NP_005321 (OMIM: 142100) hemoglobin subunit epsilon [H (147 aa) initn: 968 init1: 968 opt: 968 Z-score: 1279.2 bits: 242.7 E(85289): 1.6e-64 Smith-Waterman score: 968; 100.0% identity (100.0% similar) in 147 aa overlap (1-147:1-147) 10 20 30 40 50 60 pF1KE5 MVHFTAEEKAAVTSLWSKMNVEEAGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGNPK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 MVHFTAEEKAAVTSLWSKMNVEEAGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGNPK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 VKAHGKKVLTSFGDAIKNMDNLKPAFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 VKAHGKKVLTSFGDAIKNMDNLKPAFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFG 70 80 90 100 110 120 130 140 pF1KE5 KEFTPEVQAAWQKLVSAVAIALAHKYH ::::::::::::::::::::::::::: NP_005 KEFTPEVQAAWQKLVSAVAIALAHKYH 130 140 >>NP_000175 (OMIM: 141749,142250,613977) hemoglobin subu (147 aa) initn: 810 init1: 810 opt: 810 Z-score: 1072.1 bits: 204.4 E(85289): 5.6e-53 Smith-Waterman score: 810; 79.6% identity (94.6% similar) in 147 aa overlap (1-147:1-147) 10 20 30 40 50 60 pF1KE5 MVHFTAEEKAAVTSLWSKMNVEEAGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGNPK : ::: :.::..::::.:.:::.::::.::::::::::::::::::::::: :::.:::: NP_000 MGHFTEEDKATITSLWGKVNVEDAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 VKAHGKKVLTSFGDAIKNMDNLKPAFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFG :::::::::::.:::::..:.:: .::.::::::::::::::::::::::.: .:: ::: NP_000 VKAHGKKVLTSLGDAIKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFG 70 80 90 100 110 120 130 140 pF1KE5 KEFTPEVQAAWQKLVSAVAIALAHKYH :::::::::.:::.:..:: ::. .:: NP_000 KEFTPEVQASWQKMVTGVASALSSRYH 130 140 >>NP_000550 (OMIM: 141749,142200) hemoglobin subunit gam (147 aa) initn: 809 init1: 809 opt: 809 Z-score: 1070.8 bits: 204.1 E(85289): 6.6e-53 Smith-Waterman score: 809; 79.6% identity (93.9% similar) in 147 aa overlap (1-147:1-147) 10 20 30 40 50 60 pF1KE5 MVHFTAEEKAAVTSLWSKMNVEEAGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGNPK : ::: :.::..::::.:.:::.::::.::::::::::::::::::::::: :::.:::: NP_000 MGHFTEEDKATITSLWGKVNVEDAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 VKAHGKKVLTSFGDAIKNMDNLKPAFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFG :::::::::::.::: :..:.:: .::.::::::::::::::::::::::.: .:: ::: NP_000 VKAHGKKVLTSLGDATKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFG 70 80 90 100 110 120 130 140 pF1KE5 KEFTPEVQAAWQKLVSAVAIALAHKYH :::::::::.:::.:.::: ::. .:: NP_000 KEFTPEVQASWQKMVTAVASALSSRYH 130 140 >>NP_000509 (OMIM: 140700,141749,141900,603902,603903,60 (147 aa) initn: 774 init1: 774 opt: 774 Z-score: 1024.9 bits: 195.6 E(85289): 2.4e-50 Smith-Waterman score: 774; 75.5% identity (93.9% similar) in 147 aa overlap (1-147:1-147) 10 20 30 40 50 60 pF1KE5 MVHFTAEEKAAVTSLWSKMNVEEAGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGNPK :::.: :::.:::.::.:.::.:.:::::::::::::::::::.:::.::.:.:..:::: NP_000 MVHLTPEEKSAVTALWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGNPK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 VKAHGKKVLTSFGDAIKNMDNLKPAFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFG ::::::::: .:.:.. ..:::: .:: ::::::::::::::::.:::::.: .:: ::: NP_000 VKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFRLLGNVLVCVLAHHFG 70 80 90 100 110 120 130 140 pF1KE5 KEFTPEVQAAWQKLVSAVAIALAHKYH ::::: ::::.::.:..:: ::::::: NP_000 KEFTPPVQAAYQKVVAGVANALAHKYH 130 140 >>NP_000510 (OMIM: 142000) hemoglobin subunit delta [Hom (147 aa) initn: 754 init1: 754 opt: 754 Z-score: 998.7 bits: 190.8 E(85289): 6.9e-49 Smith-Waterman score: 754; 72.8% identity (94.6% similar) in 147 aa overlap (1-147:1-147) 10 20 30 40 50 60 pF1KE5 MVHFTAEEKAAVTSLWSKMNVEEAGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGNPK :::.: :::.::..::.:.::. .:::::::::::::::::::.:::.::::.:..:::: NP_000 MVHLTPEEKTAVNALWGKVNVDAVGGEALGRLLVVYPWTQRFFESFGDLSSPDAVMGNPK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 VKAHGKKVLTSFGDAIKNMDNLKPAFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFG ::::::::: .:.:.. ..:::: .:..::::::::::::::::.:::::.: .:: .:: NP_000 VKAHGKKVLGAFSDGLAHLDNLKGTFSQLSELHCDKLHVDPENFRLLGNVLVCVLARNFG 70 80 90 100 110 120 130 140 pF1KE5 KEFTPEVQAAWQKLVSAVAIALAHKYH :::::..:::.::.:..:: ::::::: NP_000 KEFTPQMQAAYQKVVAGVANALAHKYH 130 140 >>XP_005255345 (OMIM: 142310) PREDICTED: hemoglobin subu (142 aa) initn: 287 init1: 287 opt: 357 Z-score: 478.6 bits: 94.5 E(85289): 6.4e-20 Smith-Waterman score: 357; 40.0% identity (75.9% similar) in 145 aa overlap (4-146:3-141) 10 20 30 40 50 pF1KE5 MVHFTAEEKAAVTSLWSKMNVEE--AGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGN .: :.. ..:.:.:.... : :.: ::.. .: :. .: : .: : :. XP_005 MSLTKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHF-DLH-P----GS 10 20 30 40 50 60 70 80 90 100 110 pF1KE5 PKVKAHGKKVLTSFGDAIKNMDNLKPAFAKLSELHCDKLHVDPENFKLLGNVMVIILATH ...:::.::... :::.:..:.. :..:::::: :.::: :::::.. ... ::.. XP_005 AQLRAHGSKVVAAVGDAVKSIDDIGGALSKLSELHAYILRVDPVNFKLLSHCLLVTLAAR 60 70 80 90 100 110 120 130 140 pF1KE5 FGKEFTPEVQAAWQKLVSAVAIALAHKYH : .:: :..:::.:..:.:. .:..:: XP_005 FPADFTAEAHAAWDKFLSVVSSVLTEKYR 120 130 140 >>NP_005323 (OMIM: 142310) hemoglobin subunit zeta [Homo (142 aa) initn: 287 init1: 287 opt: 357 Z-score: 478.6 bits: 94.5 E(85289): 6.4e-20 Smith-Waterman score: 357; 40.0% identity (75.9% similar) in 145 aa overlap (4-146:3-141) 10 20 30 40 50 pF1KE5 MVHFTAEEKAAVTSLWSKMNVEE--AGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGN .: :.. ..:.:.:.... : :.: ::.. .: :. .: : .: : :. NP_005 MSLTKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHF-DLH-P----GS 10 20 30 40 50 60 70 80 90 100 110 pF1KE5 PKVKAHGKKVLTSFGDAIKNMDNLKPAFAKLSELHCDKLHVDPENFKLLGNVMVIILATH ...:::.::... :::.:..:.. :..:::::: :.::: :::::.. ... ::.. NP_005 AQLRAHGSKVVAAVGDAVKSIDDIGGALSKLSELHAYILRVDPVNFKLLSHCLLVTLAAR 60 70 80 90 100 110 120 130 140 pF1KE5 FGKEFTPEVQAAWQKLVSAVAIALAHKYH : .:: :..:::.:..:.:. .:..:: NP_005 FPADFTAEAHAAWDKFLSVVSSVLTEKYR 120 130 140 >>XP_005255344 (OMIM: 142310) PREDICTED: hemoglobin subu (154 aa) initn: 287 init1: 287 opt: 357 Z-score: 478.1 bits: 94.5 E(85289): 6.9e-20 Smith-Waterman score: 357; 40.0% identity (75.9% similar) in 145 aa overlap (4-146:15-153) 10 20 30 40 pF1KE5 MVHFTAEEKAAVTSLWSKMNVEE--AGGEALGRLLVVYPWTQRFFDSFG .: :.. ..:.:.:.... : :.: ::.. .: :. .: : XP_005 MTCFFDAAHPAAMSLTKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHF- 10 20 30 40 50 50 60 70 80 90 100 pF1KE5 NLSSPSAILGNPKVKAHGKKVLTSFGDAIKNMDNLKPAFAKLSELHCDKLHVDPENFKLL .: : :. ...:::.::... :::.:..:.. :..:::::: :.::: ::::: XP_005 DLH-P----GSAQLRAHGSKVVAAVGDAVKSIDDIGGALSKLSELHAYILRVDPVNFKLL 60 70 80 90 100 110 110 120 130 140 pF1KE5 GNVMVIILATHFGKEFTPEVQAAWQKLVSAVAIALAHKYH .. ... ::..: .:: :..:::.:..:.:. .:..:: XP_005 SHCLLVTLAARFPADFTAEAHAAWDKFLSVVSSVLTEKYR 120 130 140 150 >>NP_001003938 (OMIM: 609639) hemoglobin subunit mu [Hom (141 aa) initn: 293 init1: 259 opt: 332 Z-score: 445.9 bits: 88.4 E(85289): 4.3e-18 Smith-Waterman score: 332; 36.6% identity (74.5% similar) in 145 aa overlap (4-146:2-140) 10 20 30 40 50 pF1KE5 MVHFTAEEKAAVTSLWSKMNVEEA--GGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGN ..:.:.: ....:. . .:: :.: : ::..::: :. .: .. .. . .: NP_001 MLSAQERAQIAQVWDLIAGHEAQFGAELLLRLFTVYPSTKVYFPHLSACQDATQLL-- 10 20 30 40 50 60 70 80 90 100 110 pF1KE5 PKVKAHGKKVLTSFGDAIKNMDNLKPAFAKLSELHCDKLHVDPENFKLLGNVMVIILATH .::...:.. : :....:::. :.. :..:: :.::: :: :: . . ..::.: NP_001 ----SHGQRMLAAVGAAVQHVDNLRAALSPLADLHALVLRVDPANFPLLIQCFHVVLASH 60 70 80 90 100 110 120 130 140 pF1KE5 FGKEFTPEVQAAWQKLVSAVAIALAHKYH . ::: ..::::.:....::..:..:: NP_001 LQDEFTVQMQAAWDKFLTGVAVVLTEKYR 120 130 140 >>NP_000549 (OMIM: 140700,141800,604131,613978) hemoglob (142 aa) initn: 264 init1: 264 opt: 332 Z-score: 445.8 bits: 88.4 E(85289): 4.3e-18 Smith-Waterman score: 332; 37.9% identity (72.4% similar) in 145 aa overlap (4-146:3-141) 10 20 30 40 50 pF1KE5 MVHFTAEEKAAVTSLWSKMNVE--EAGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGN .. .:. : . :.:.... : :.::: :... .: :. .: : .:: :. NP_000 MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHF-DLSH-----GS 10 20 30 40 50 60 70 80 90 100 110 pF1KE5 PKVKAHGKKVLTSFGDAIKNMDNLKPAFAKLSELHCDKLHVDPENFKLLGNVMVIILATH .::.::::: .. .:. ..:.. :.. ::.:: ::.::: :::::.. ... ::.: NP_000 AQVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAH 60 70 80 90 100 110 120 130 140 pF1KE5 FGKEFTPEVQAAWQKLVSAVAIALAHKYH . :::: :.:. .:....:. .:. :: NP_000 LPAEFTPAVHASLDKFLASVSTVLTSKYR 120 130 140 147 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 21:29:43 2016 done: Mon Nov 7 21:29:43 2016 Total Scan time: 4.470 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]