Restriction map for
pFN21AE3590
(Circular) (Six-base) MAPSORT of: pFN21AE3590.seq Check: 5670 from: 1 to: 5314
pFN21AE3590 5314 bp
With 182 enzymes: SgfI *
December 28, 2011 15:26 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 2028 2421 3124 278
Size: 53 83 186 936 492 393 703 2468
Fragments arranged by size:
2468 936 703 492 393 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2398 2657 1937
Size: 461 259 4594
Fragments arranged by size:
4594 461 259
Acc65I G'GTAC_C
Cuts at: 2635 2635
Size: 5314
AclI AA'CG_TT
Cuts at: 1563 3441 3814 1563
Size: 1878 373 3063
Fragments arranged by size:
3063 1878 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 3377 4761 5029 1632
Size: 1745 1384 268 1917
Fragments arranged by size:
1917 1745 1384 268
AfeI AGC'GCT
Cuts at: 2081 2210 2081
Size: 129 5185
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5117
AflIII A'CryG_T
Cuts at: 1203 2401 4213 5190 1203
Size: 1198 1812 977 1327
Fragments arranged by size:
1812 1327 1198 977
AgeI A'CCGG_T
Cuts at: 4145 4145
Size: 5314
AhdI GACnn_n'nnGTC
Cuts at: 4043 4043
Size: 5314
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5314
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5314
AlwNI CAG_nnn'CTG
Cuts at: 2204 3057 4629 2204
Size: 853 1572 2889
Fragments arranged by size:
2889 1572 853
ApaLI G'TGCA_C
Cuts at: 2087 3371 4527 2087
Size: 1284 1156 2874
Fragments arranged by size:
2874 1284 1156
ApoI r'AATT_y
Cuts at: 1493 2623 2849 3001 5110 1493
Size: 1130 226 152 2109 1697
Fragments arranged by size:
2109 1697 1130 226 152
AseI AT'TA_AT
Cuts at: 160 1032 3868 160
Size: 872 2836 1606
Fragments arranged by size:
2836 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5314
AvaI C'yCGr_G
Cuts at: 1870 1943 2639 1870
Size: 73 696 4545
Fragments arranged by size:
4545 696 73
BamHI G'GATC_C
Cuts at: 2644 3011 2644
Size: 367 4947
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2243 2360 2635 4090 618
Size: 325 217 627 456 117 275 1455 1842
Fragments arranged by size:
1842 1455 627 456 325 275 217 117
BanII G_rGCy'C
Cuts at: 1391 2496 2633 1391
Size: 1105 137 4072
Fragments arranged by size:
4072 1105 137
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 2391 928
Size: 971 492 3851
Fragments arranged by size:
3851 971 492
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3505 3539 1903
Size: 34 1568 34 3678
Fragments arranged by size:
3678 1568 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3206 4416 3206
Size: 1210 4104
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5314
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 2141 3925 136
Size: 107 122 71 631 605 469 1784 1525
Fragments arranged by size:
1784 1525 631 605 469 122 107 71
BglII A'GATC_T
Cuts at: 5309 5309
Size: 5314
BlpI GC'TnA_GC
Cuts at: 2448 2731 2448
Size: 283 5031
Bme1580I G_kGCm'C
Cuts at: 1790 2091 3375 4531 1790
Size: 301 1284 1156 2573
Fragments arranged by size:
2573 1284 1156 301
BmgBI CAC'GTC
Cuts at: 1318 2402 1318
Size: 1084 4230
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 3045 4003 442
Size: 416 53 83 399 24 1628 958 1753
Fragments arranged by size:
1753 1628 958 416 399 83 53 24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5314
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 3974 1239
Size: 2735 2579
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 3439 4304 4602 3439
Size: 865 298 4151
Fragments arranged by size:
4151 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 2157 3977 882
Size: 617 658 1820 2219
Fragments arranged by size:
2219 1820 658 617
BsaAI yAC'GTr
Cuts at: 493 1204 2056 2086 3105 493
Size: 711 852 30 1019 2702
Fragments arranged by size:
2702 1019 852 711 30
BsaBI GATnn'nnATC
Cuts at: 5308 5308
Size: 5314
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 2025 2395 2418 3121
Size: 53 83 186 936 492 370 23 703
Cuts at: 3121 3503 4138 275
Size: 382 635 1451
Fragments arranged by size:
1451 936 703 635 492 382 370 186
83 53 23
BsaWI w'CCGG_w
Cuts at: 2166 2388 3747 4145 4419 4566 4977 2166
Size: 222 1359 398 274 147 411 2503
Fragments arranged by size:
2503 1359 411 398 274 222 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 1178
Size: 30 165 30 5089
Fragments arranged by size:
5089 165 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 2348 1186
Size: 1162 4152
BseYI C'CCAG_C
Cuts at: 2041 4517 5013 2041
Size: 2476 496 2342
Fragments arranged by size:
2476 2342 496
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 1163
Size: 573 4741
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2095 2160 2764 3525 4553 1540
Size: 275 186 94 65 604 761 1028 2301
Fragments arranged by size:
2301 1028 761 604 275 186 94 65
BsiHKAI G_wGCw'C
Cuts at: 2091 2496 3375 3460 4531 2091
Size: 405 879 85 1071 2874
Fragments arranged by size:
2874 1071 879 405 85
BsmI GAATG_Cn'
Cuts at: 2825 2918 2825
Size: 93 5221
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2091 2496 2633 3375 3460 4531 1391
Size: 399 301 405 137 742 85 1071 2174
Fragments arranged by size:
2174 1071 742 405 399 301 137 85
BspEI T'CCGG_A
Cuts at: 4977 4977
Size: 5314
BspHI T'CATG_A
Cuts at: 3203 4933 3203
Size: 1730 3584
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2382 2669 844
Size: 1538 287 3489
Fragments arranged by size:
3489 1538 287
BsrBI CCG'CTC
Cuts at: 1394 1823 2010 3201 1394
Size: 429 187 1191 3507
Fragments arranged by size:
3507 1191 429 187
BsrDI GCAATG_nn'
Cuts at: 65 1248 3809 3983 65
Size: 1183 2561 174 1396
Fragments arranged by size:
2561 1396 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 3958 4145 1700
Size: 110 2148 187 2869
Fragments arranged by size:
2869 2148 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5314
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5314
BssSI C'ACGA_G
Cuts at: 3374 4386 3374
Size: 1012 4302
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5314
BstBI TT'CG_AA
Cuts at: 4118 4118
Size: 5314
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5314
BstYI r'GATC_y
Cuts at: 1972 2566 2644 3011 3396 3413 4865 4951 4963
Size: 594 78 367 385 17 1452 86 12
Cuts at: 4963 5309 1972
Size: 346 1977
Fragments arranged by size:
1977 1452 594 385 367 346 86 78
17 12
BtgI C'CryG_G
Cuts at: 513 1065 513
Size: 552 4762
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4575
Fragments arranged by size:
4575 683 56
BtsI GCAGTG_nn'
Cuts at: 2830 3624 3644 2830
Size: 794 20 4500
Fragments arranged by size:
4500 794 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5314
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5279
DraI TTT'AAA
Cuts at: 2618 2618
Size: 5314
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4321 809
Size: 507 3005 1802
Fragments arranged by size:
3005 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2142 2761 3650
Size: 54 1425 50 275 18 312 619 889
Cuts at: 3650 5279 8
Size: 1629 43
Fragments arranged by size:
1629 1425 889 619 312 275 54 50
43 18
EagI C'GGCC_G
Cuts at: 1537 1812 2761 1537
Size: 275 949 4090
Fragments arranged by size:
4090 949 275
EarI CTCTTCn'nnn_
Cuts at: 1353 2501 3244 1353
Size: 1148 743 3423
Fragments arranged by size:
3423 1148 743
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 3901 4275 4421 387
Size: 1064 138 2312 374 146 1280
Fragments arranged by size:
2312 1280 1064 374 146 138
EcoICRI GAG'CTC
Cuts at: 2494 2494
Size: 5314
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 3377 3974 4761 5029 1239
Size: 393 1745 597 787 268 1524
Fragments arranged by size:
1745 1524 787 597 393 268
EcoNI CCTnn'n_nnAGG
Cuts at: 2333 2333
Size: 5314
EcoO109I rG'GnC_Cy
Cuts at: 2108 2108
Size: 5314
EcoRI G'AATT_C
Cuts at: 2623 3001 2623
Size: 378 4936
FspI TGC'GCA
Cuts at: 2324 3820 2324
Size: 1496 3818
HaeII r_GCGC'y
Cuts at: 1678 2083 2212 4461 1678
Size: 405 129 2249 2531
Fragments arranged by size:
2531 2249 405 129
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 3955 3987 4029 4061 1373
Size: 32 135 32 2383 32 42 32 2626
Fragments arranged by size:
2626 2383 135 42 32 32 32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2399 2658 2904 669
Size: 988 281 461 259 246 3079
Fragments arranged by size:
3079 988 461 281 259 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5314
HpaI GTT'AAC
Cuts at: 2904 2904
Size: 5314
KpnI G_GTAC'C
Cuts at: 2639 2639
Size: 5314
MfeI C'AATT_G
Cuts at: 2913 2913
Size: 5314
MluI A'CGCG_T
Cuts at: 5190 5190
Size: 5314
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 2140 4428 4612 1305
Size: 835 2288 184 2007
Fragments arranged by size:
2288 2007 835 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 2144 10
Size: 54 1425 343 312 3180
Fragments arranged by size:
3180 1425 343 312 54
MslI CAynn'nnrTG
Cuts at: 518 1166 3272 3631 3790 518
Size: 648 2106 359 159 2042
Fragments arranged by size:
2106 2042 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2601 2730 3407 4555 4800 1606
Size: 995 129 677 1148 245 2120
Fragments arranged by size:
2120 1148 995 677 245 129
NcoI C'CATG_G
Cuts at: 513 1065 513
Size: 552 4762
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5314
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5314
NotI GC'GGCC_GC
Cuts at: 2761 2761
Size: 5314
NspI r_CATG'y
Cuts at: 1132 1229 2672 4217 1132
Size: 97 1443 1545 2229
Fragments arranged by size:
2229 1545 1443 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5314
PciI A'CATG_T
Cuts at: 4213 4213
Size: 5314
PflMI CCAn_nnn'nTGG
Cuts at: 1108 2485 2506 1108
Size: 1377 21 3916
Fragments arranged by size:
3916 1377 21
PfoI T'CCnGG_A
Cuts at: 2421 2421
Size: 5314
PmeI GTTT'AAAC
Cuts at: 2618 2618
Size: 5314
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3383 3415 4896 4928 3383
Size: 32 1481 32 3769
Fragments arranged by size:
3769 1481 32 32
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5314
PsiI TTA'TAA
Cuts at: 2884 2884
Size: 5314
PstI C_TGCA'G
Cuts at: 830 2666 830
Size: 1836 3478
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5314
PvuII CAG'CTG
Cuts at: 2601 2601
Size: 5314
SacI G_AGCT'C
Cuts at: 2496 2496
Size: 5314
SalI G'TCGA_C
Cuts at: 1936 2397 2656 1936
Size: 461 259 4594
Fragments arranged by size:
4594 461 259
SapI GCTCTTCn'nnn_
Cuts at: 2501 2501
Size: 5314
SbfI CC_TGCA'GG
Cuts at: 2666 2666
Size: 5314
ScaI AGT'ACT
Cuts at: 3562 5274 3562
Size: 1712 3602
SfcI C'TryA_G
Cuts at: 826 1045 2596 2662 3797 4478 4669 826
Size: 219 1551 66 1135 681 191 1471
Fragments arranged by size:
1551 1471 1135 681 219 191 66
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5314
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5314
SmaI CCC'GGG
Cuts at: 1872 2641 1872
Size: 769 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 3418 4319 4581 820
Size: 197 926 1475 901 262 1553
Fragments arranged by size:
1553 1475 926 901 262 197
SnaBI TAC'GTA
Cuts at: 493 3105 493
Size: 2612 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5314
SphI G_CATG'C
Cuts at: 1132 2672 1132
Size: 1540 3774
SspI AAT'ATT
Cuts at: 5 52 3238 5
Size: 47 3186 2081
Fragments arranged by size:
3186 2081 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5314
StyI C'CwwG_G
Cuts at: 513 1065 2145 2247 2753 513
Size: 552 1080 102 506 3074
Fragments arranged by size:
3074 1080 552 506 102
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 2146 2299 3341 3358 3511 3696 4141
Size: 1255 566 153 1042 17 153 185 445
Cuts at: 4141 325
Size: 1498
Fragments arranged by size:
1498 1255 1042 566 445 185 153 153
17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 3560 5272 96
Size: 274 80 33 51 1443 1583 1712 138
Fragments arranged by size:
1712 1583 1443 274 138 80 51 33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5274 5306 5274
Size: 32 5282
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5314
XbaI T'CTAG_A
Cuts at: 2650 2650
Size: 5314
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5314
XmaI C'CCGG_G
Cuts at: 1870 2639 1870
Size: 769 4545
XmnI GAAnn'nnTTC
Cuts at: 3443 3443
Size: 5314
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 2026 2419 3122 276
Size: 53 83 186 936 492 393 703 2468
Fragments arranged by size:
2468 936 703 492 393 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AfeI AflII AflIII
AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI
AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI
BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI
BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI
BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI
BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI
BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI
CspCI DraI DrdI EaeI EagI EarI EciI EcoICRI
Eco57MI EcoNI EcoO109I EcoRI FspI HaeII Hin4I HincII
HindIII HpaI KpnI MfeI MluI MmeI MscI MslI
MspA1I NcoI NdeI NheI NotI NspI PasI PciI
PflMI PfoI PmeI PpiI PshAI PsiI PstI PvuI
PvuII SacI SalI SapI SbfI ScaI SfcI SgfI
SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI
StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI
XmnI ZraI
Enzymes that do not cut:
AarI AloI ApaI AscI AvrII BaeI BbeI BbvCI
BfrBI BplI Bpu10I BsiWI BsmBI BstXI BstZ17I Bsu36I
DraIII EcoRV FalI FseI FspAI KasI NaeI NarI
NgoMIV NruI NsiI PacI PmlI PpuMI PspOMI PspXI
PsrI RsrII SacII SanDI SexAI SfiI SfoI SrfI
SwaI XcmI