FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1540, 125 aa 1>>>pF1KE1540 125 - 125 aa - 125 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4668+/-0.000708; mu= 11.1119+/- 0.043 mean_var=76.4349+/-14.963, 0's: 0 Z-trim(110.1): 8 B-trim: 14 in 1/49 Lambda= 0.146699 statistics sampled from 11376 (11378) to 11376 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.726), E-opt: 0.2 (0.35), width: 16 Scan time: 1.650 The best scores are: opt bits E(32554) CCDS12423.1 PDCD5 gene_id:9141|Hs108|chr19 ( 125) 779 173.2 3.7e-44 >>CCDS12423.1 PDCD5 gene_id:9141|Hs108|chr19 (125 aa) initn: 779 init1: 779 opt: 779 Z-score: 906.3 bits: 173.2 E(32554): 3.7e-44 Smith-Waterman score: 779; 100.0% identity (100.0% similar) in 125 aa overlap (1-125:1-125) 10 20 30 40 50 60 pF1KE1 MADEELEALRRQRLAELQAKHGDPGDAAQQEAKHREAEMRNSILAQVLDQSARARLSNLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 MADEELEALRRQRLAELQAKHGDPGDAAQQEAKHREAEMRNSILAQVLDQSARARLSNLA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 LVKPEKTKAVENYLIQMARYGQLSEKVSEQGLIEILKKVSQQTEKTTTVKFNRRKVMDSD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 LVKPEKTKAVENYLIQMARYGQLSEKVSEQGLIEILKKVSQQTEKTTTVKFNRRKVMDSD 70 80 90 100 110 120 pF1KE1 EDDDY ::::: CCDS12 EDDDY 125 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 01:20:51 2016 done: Mon Nov 7 01:20:51 2016 Total Scan time: 1.650 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]