FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8921, 267 aa 1>>>pF1KB8921 267 - 267 aa - 267 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.9285+/-0.000305; mu= 5.2753+/- 0.019 mean_var=197.0111+/-39.514, 0's: 0 Z-trim(123.6): 259 B-trim: 47 in 1/54 Lambda= 0.091375 statistics sampled from 43414 (43706) to 43414 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.817), E-opt: 0.2 (0.512), width: 16 Scan time: 8.890 The best scores are: opt bits E(85289) NP_002440 (OMIM: 123101,168500,168550,604757) home ( 267) 1777 245.6 6.9e-65 XP_016864978 (OMIM: 123101,168500,168550,604757) P ( 134) 862 124.7 8.6e-29 NP_002439 (OMIM: 106600,142983,189500,608874) home ( 303) 835 121.5 1.8e-27 NP_005212 (OMIM: 220600,600028) homeobox protein D ( 289) 346 57.0 4.5e-08 XP_011533177 (OMIM: 600297) PREDICTED: homeobox pr ( 321) 305 51.7 2e-06 NP_064448 (OMIM: 605211) barH-like 1 homeobox prot ( 327) 303 51.4 2.5e-06 NP_064447 (OMIM: 605212) barH-like 2 homeobox prot ( 387) 300 51.1 3.7e-06 NP_038463 (OMIM: 601881,611038) retinal homeobox p ( 346) 299 50.9 3.7e-06 NP_001129743 (OMIM: 217095,611770) homeobox protei ( 301) 295 50.3 4.9e-06 NP_005510 (OMIM: 600647) homeobox protein HMX2 [Ho ( 273) 291 49.8 6.5e-06 XP_005269800 (OMIM: 600647) PREDICTED: homeobox pr ( 273) 291 49.8 6.5e-06 NP_005211 (OMIM: 104510,190320,600525) homeobox pr ( 287) 282 48.6 1.5e-05 NP_004396 (OMIM: 126255) homeobox protein DLX-2 [H ( 328) 282 48.6 1.7e-05 NP_001099044 (OMIM: 613380) homeobox protein HMX3 ( 357) 279 48.3 2.4e-05 NP_660328 (OMIM: 606727) homeobox protein Nkx-2.3 ( 364) 278 48.2 2.6e-05 NP_835221 (OMIM: 600029) homeobox protein DLX-1 is ( 255) 275 47.6 2.7e-05 NP_612138 (OMIM: 601911,616788) homeobox protein D ( 240) 274 47.5 2.8e-05 NP_061815 (OMIM: 142992,612109) homeobox protein H ( 348) 276 47.9 3.1e-05 NP_006158 (OMIM: 602041) homeobox protein Nkx-3.1 ( 234) 272 47.2 3.3e-05 NP_004378 (OMIM: 108900,187500,217095,225250,60058 ( 324) 272 47.3 4.2e-05 NP_005512 (OMIM: 186770) T-cell leukemia homeobox ( 330) 271 47.2 4.7e-05 XP_016867292 (OMIM: 220600,600028) PREDICTED: home ( 161) 264 46.0 5.3e-05 XP_005250242 (OMIM: 220600,600028) PREDICTED: home ( 161) 264 46.0 5.3e-05 NP_005213 (OMIM: 600030) homeobox protein DLX-6 [H ( 293) 268 46.8 5.6e-05 NP_001476 (OMIM: 601135) homeobox protein GBX-2 is ( 348) 264 46.3 9.2e-05 NP_067015 (OMIM: 142986) homeobox protein Hox-D11 ( 338) 260 45.8 0.00013 NP_663632 (OMIM: 616542) GS homeobox 1 [Homo sapie ( 264) 258 45.4 0.00013 NP_001925 (OMIM: 601911,616788) homeobox protein D ( 168) 253 44.6 0.00015 XP_016879780 (OMIM: 601911,616788) PREDICTED: home ( 168) 253 44.6 0.00015 NP_001091639 (OMIM: 611074) brain-specific homeobo ( 233) 255 44.9 0.00016 NP_001092304 (OMIM: 603354) homeobox protein GBX-1 ( 363) 257 45.4 0.00018 NP_001182446 (OMIM: 186770) T-cell leukemia homeob ( 257) 250 44.3 0.00027 XP_011533180 (OMIM: 600297) PREDICTED: homeobox pr ( 204) 248 44.0 0.00027 NP_006159 (OMIM: 602563) homeobox protein Nkx-6.1 ( 367) 252 44.7 0.00029 NP_001795 (OMIM: 600746) homeobox protein CDX-1 [H ( 265) 248 44.1 0.00033 NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 252 44.8 0.00033 XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 252 44.8 0.00033 NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 252 44.8 0.00033 XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 252 44.8 0.00033 XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 252 44.8 0.00033 XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 252 44.8 0.00033 XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 252 44.8 0.00033 NP_004089 (OMIM: 269160,600035) homeobox protein E ( 252) 247 43.9 0.00034 XP_016867454 (OMIM: 603354) PREDICTED: homeobox pr ( 203) 244 43.4 0.00039 XP_016867453 (OMIM: 603354) PREDICTED: homeobox pr ( 204) 244 43.4 0.00039 NP_057391 (OMIM: 604675) paired mesoderm homeobox ( 253) 245 43.7 0.00041 NP_001158727 (OMIM: 142994,176450) motor neuron an ( 189) 242 43.1 0.00044 XP_011509367 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 248 44.3 0.00046 XP_005246567 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 248 44.3 0.00046 XP_006712540 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 248 44.3 0.00046 >>NP_002440 (OMIM: 123101,168500,168550,604757) homeobox (267 aa) initn: 1777 init1: 1777 opt: 1777 Z-score: 1285.9 bits: 245.6 E(85289): 6.9e-65 Smith-Waterman score: 1777; 99.6% identity (99.6% similar) in 267 aa overlap (1-267:1-267) 10 20 30 40 50 60 pF1KB8 MASPSKGNDLFSPDEEGPAVVAGPGPGPGGAEGAAEERRVKVSSLPFSVEALMSDKKPPK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 MASPSKGNDLFSPDEEGPAVVAGPGPGPGGAEGAAEERRVKVSSLPFSVEALMSDKKPPK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 EASPLPAESASAGATLRPLLLSGHGAREAHSPGPLVKPFETASVKSENSEDGAAWMQEPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 EASPLPAESASAGATLRPLLLSGHGAREAHSPGPLVKPFETASVKSENSEDGAAWMQEPG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 RYSPPPRHTSPTTCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLN :::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 RYSPPPRHMSPTTCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLN 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB8 LTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSSFSLPFPISSPLQAASIYGASY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 LTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSSFSLPFPISSPLQAASIYGASY 190 200 210 220 230 240 250 260 pF1KB8 PFHRPVLPIPPVGLYATPVGYGMYHLS ::::::::::::::::::::::::::: NP_002 PFHRPVLPIPPVGLYATPVGYGMYHLS 250 260 >>XP_016864978 (OMIM: 123101,168500,168550,604757) PREDI (134 aa) initn: 892 init1: 862 opt: 862 Z-score: 637.9 bits: 124.7 E(85289): 8.6e-29 Smith-Waterman score: 862; 96.9% identity (98.5% similar) in 131 aa overlap (1-131:1-131) 10 20 30 40 50 60 pF1KB8 MASPSKGNDLFSPDEEGPAVVAGPGPGPGGAEGAAEERRVKVSSLPFSVEALMSDKKPPK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MASPSKGNDLFSPDEEGPAVVAGPGPGPGGAEGAAEERRVKVSSLPFSVEALMSDKKPPK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 EASPLPAESASAGATLRPLLLSGHGAREAHSPGPLVKPFETASVKSENSEDGAAWMQEPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 EASPLPAESASAGATLRPLLLSGHGAREAHSPGPLVKPFETASVKSENSEDGAAWMQEPG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 RYSPPPRHTSPTTCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLN :::::: . .: XP_016 RYSPPPSECAPGQE 130 >>NP_002439 (OMIM: 106600,142983,189500,608874) homeobox (303 aa) initn: 825 init1: 596 opt: 835 Z-score: 614.1 bits: 121.5 E(85289): 1.8e-27 Smith-Waterman score: 907; 58.9% identity (78.5% similar) in 275 aa overlap (16-267:31-303) 10 20 30 40 pF1KB8 MASPSKGNDLFSPDEEGPAVVAGPGPGPGGAEGAAEERRVKVSSL ..:...:. . . :. : .:. . :. : : NP_002 MAPAADMTSLPLGVKVEDSAFGKPAGGGAGQAPSAAAATAAAMGADEEGAKPK-VSPSLL 10 20 30 40 50 50 60 70 80 90 pF1KB8 PFSVEALMSDKKPP--KEASPLPAESA-SAGATLRPLLL--SGHGAREA-HSPGPL---- ::::::::.:.. : ::.. :.:.. .::.. .:: . .. :: .: :: :: NP_002 PFSVEALMADHRKPGAKESALAPSEGVQAAGGSAQPLGVPPGSLGAPDAPSSPRPLGHFS 60 70 80 90 100 110 100 110 120 130 140 pF1KB8 ----VKPFETASVKSENSE--DGAAWMQEPGRYSPPP-RHTSPTTCTLRKHKTNRKPRTP .: : : ::.:. : . . ::: : :.:::: :. :: .::::::::::::::: NP_002 VGGLLKLPEDALVKAESPEKPERTPWMQSP-RFSPPPARRLSPPACTLRKHKTNRKPRTP 120 130 140 150 160 170 150 160 170 180 190 200 pF1KB8 FTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKL :::.:::::::::::::::::::::::::::.:::::::::::::::::::::::::::: NP_002 FTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKL 180 190 200 210 220 230 210 220 230 240 250 260 pF1KB8 KMAAKPMLP-SSFSLPFPISSPLQAA-----SIYGASYPFHRPVLPIPPVGLYATPVGYG ::::::::: ..:.: ::...: .: :.:::: ::.: .::. :::::.. :::. NP_002 KMAAKPMLPPAAFGLSFPLGGPAAVAAAAGASLYGASGPFQRAALPVAPVGLYTAHVGYS 240 250 260 270 280 290 pF1KB8 MYHLS ::::. NP_002 MYHLT 300 >>NP_005212 (OMIM: 220600,600028) homeobox protein DLX-5 (289 aa) initn: 280 init1: 243 opt: 346 Z-score: 266.0 bits: 57.0 E(85289): 4.5e-08 Smith-Waterman score: 346; 32.3% identity (58.6% similar) in 251 aa overlap (14-255:6-252) 10 20 30 40 50 60 pF1KB8 MASPSKGNDLFSPDEEGPAVVAGPGPGPGGAEGAAEERRVKVSSLPFSVEALMSDKKPPK :.. :.. .: .: . .: .. . .:: : : :: : NP_005 MTGVFDRRVPSIRSGDFQAPFQTSAAMHHPSQESPTLPES-SATDSDYYSPT 10 20 30 40 50 70 80 90 100 110 pF1KB8 EASP---LPAESASAGATLRPLLLSGHGAREAHSPGPLVKPFETASVKSENSEDGAAWMQ ..: ::: : .: : . ::. . . : .: . : : . :.:. . NP_005 GGAPHGYCSPTSASYGKALNPYQYQYHGVNGSAGSYP-AKAYADYSYASSYHQYGGAYNR 60 70 80 90 100 110 120 130 140 150 160 170 pF1KB8 EPGRYSPPPRH-TSPTTCTLR-KHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEF :. . : .. : : . . : : ::::: ... :: ::.:.:.. :::.. ::::. NP_005 VPSATNQPEKEVTEPEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAEL 120 130 140 150 160 170 180 190 200 210 220 230 pF1KB8 SSSLNLTETQVKIWFQNRRAKAKR-LQEAEL--EKLKMAAKPMLPSSFSLPFPISSPLQA ..::.::.:::::::::.:.: :. ....:. :. .. :: .: . : . : :. NP_005 AASLGLTQTQVKIWFQNKRSKIKKIMKNGEMPPEHSPSSSDPMACNSPQSP-AVWEP-QG 180 190 200 210 220 240 250 260 pF1KB8 ASIYGASYPF-HRPVLPIPPVGLYATPVGYGMYHLS .: . .: : :. :.. : NP_005 SSRSLSHHPHAHPPTSNQSPASSYLENSASWYTSAASSINSHLPPPGSLQHPLALASGTL 230 240 250 260 270 280 >>XP_011533177 (OMIM: 600297) PREDICTED: homeobox protei (321 aa) initn: 250 init1: 189 opt: 305 Z-score: 236.2 bits: 51.7 E(85289): 2e-06 Smith-Waterman score: 305; 29.5% identity (56.1% similar) in 271 aa overlap (12-258:60-317) 10 20 30 pF1KB8 MASPSKGNDLFSPDEEGPAVVAGP------GPGPGGAEGAA :: ::. ..: : .:::: .:: XP_011 NFVSPPQYPDYGGYHVAAAAAAAANLDSAQSPGPSWPAAYGAPLREDWNGYAPGGAAAAA 30 40 50 60 70 80 40 50 60 70 80 90 pF1KB8 EERRVKVSS-LPFSVEALMS--DKKPPKEASPLPAESASAGATLRPLLLSGHGAREAHSP . ... : .. . : : .: .. : . :.: . :: .. .: XP_011 NAVAHGLNGGSPAAAMGYSSPADYHPHHHPHHHPHHPAAAPSCASGLL-------QTLNP 90 100 110 120 130 140 100 110 120 130 140 pF1KB8 GPLVKPFETASVKSENSEDGAA------WMQEPGRYSPPPRH-TSPTTCTLRKHKTNRKP :: : .:.. .:. :. ::..:.. : . :::.. . : .:. : XP_011 GP---PGPAATAAAEQLSPGGQRRNLCEWMRKPAQQSLGSQALTSPSSTV--KTRTKDKY 150 160 170 180 190 150 160 170 180 190 200 pF1KB8 RTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAEL :. .: : : ::..:. ..:..: ..::....:.:.: :::::::::::: ..... .: XP_011 RVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAKERKINKKKL 200 210 220 230 240 250 210 220 230 240 250 pF1KB8 EKLKMAAKPMLPSSFSLPF-----PISS---PLQAASIYGASYPFHRPVLPIPPVGLYAT .. .. :. : : :. : ::. .: :: : : . . :.: . XP_011 QQQQQQQPPQPPPPPPQPPQPQPGPLRSVPEPLSPVSSLQASVPGSVPGV-LGPTGGVLN 260 270 280 290 300 310 260 pF1KB8 PVGYGMYHLS : XP_011 PTVTQ 320 >>NP_064448 (OMIM: 605211) barH-like 1 homeobox protein (327 aa) initn: 318 init1: 237 opt: 303 Z-score: 234.6 bits: 51.4 E(85289): 2.5e-06 Smith-Waterman score: 334; 34.1% identity (54.3% similar) in 267 aa overlap (2-248:49-296) 10 20 pF1KB8 MASP-SKGNDLFSPDEEGPAVVAGPGPG--- .:: : : : . :. ..::: NP_064 SPALPKGDPLLGDCRSPLELSPRSESSSDCSSPASPGRDCLETGTPRPGGASGPGLDSHL 20 30 40 50 60 70 30 40 50 60 70 80 pF1KB8 -PGGAEGAAEERRVKVSSLPFSVEALMSDKKPPKEASPLPAESASAGATLRPLLLSGHGA :: . :. : : : : .. ...: :: .: .:.: : . .: NP_064 QPGQLSAPAQSRTVTSS---FLIRDILADCKPLAACAPY----SSSGQPAAPEPGGRLAA 80 90 100 110 120 130 90 100 110 120 130 140 pF1KB8 REAHS-PGPLVKPFETASVKSENS--EDGAAWMQEPGRYSPPPRHTSPTTCTLRKHKTNR . :.. : : .:: :: . :.: .. .: ::: : .: : NP_064 KAAEDFRDKLDKSGSNASSDSEYKVKEEGDREISS-SRDSPPVRLKKP-----------R 140 150 160 170 150 160 170 180 190 200 pF1KB8 KPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEA : :: :: :: :::.:....:::. .: :...:::::.:::: :.::::.: :: . NP_064 KARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAV 180 190 200 210 220 230 210 220 230 240 250 pF1KB8 ELEKLKMAA-----KPMLPSSFSLPFPISSPLQ-AASIY---GASYP---FHRPVLPIPP :: : :. . :.:: . : . : :. .:..: : : : ..::..: NP_064 GLELLAEAGNYSALQRMFPSPYFYPQSLVSNLDPGAALYLYRGPSAPPPALQRPLVPRIL 240 250 260 270 280 290 260 pF1KB8 VGLYATPVGYGMYHLS NP_064 IHGLQGASEPPPPLPPLAGVLPRAAQPR 300 310 320 >>NP_064447 (OMIM: 605212) barH-like 2 homeobox protein (387 aa) initn: 252 init1: 225 opt: 300 Z-score: 231.5 bits: 51.1 E(85289): 3.7e-06 Smith-Waterman score: 300; 28.4% identity (56.8% similar) in 257 aa overlap (2-251:99-346) 10 20 30 pF1KB8 MASPSKGNDLFSPDEEGPAVVAGPGPGPGGA :.:... . . :... : : : : NP_064 TMEPPEPHLVADATQHHHHLHHSQQPPPPAAAPTQSLQPL-PQQQQPLPPQQPPPPPPQQ 70 80 90 100 110 120 40 50 60 70 80 90 pF1KB8 EG-AAEERRVKVSSLPFSVEALMSDKKPPKEASPLPAESASAGATLRPLLLSGHGAREAH : :: :...:: : .. ...:.:: .: . .: : . .....:. NP_064 LGSAASAPRTSTSS--FLIKDILGDSKPLAACAPYSTSVSSPHHTPKQ---ESNAVHESF 130 140 150 160 170 180 100 110 120 130 140 pF1KB8 SPGPLVKPFETASVKSENSEDGAAWMQEPGRYSPPPRH-TSPTTCTLRKHKTNRKPRTPF : : . : ...: .. ::. . .. : :. :: . : :: :: : NP_064 RP-KLEQ--EDSKTKLDKREDSQSDIKCHGTKEEGDREITSSRESPPVRAKKPRKARTAF 190 200 210 220 230 150 160 170 180 190 200 pF1KB8 TTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLK . :: :::.:....:::. .: .....::::.:::: :.::::.: :: . :: : NP_064 SDHQLNQLERSFERQKYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLA 240 250 260 270 280 290 210 220 230 240 250 260 pF1KB8 MAA-----KPMLPSSFSLPFPISSPLQAASIYGASYPFHRPVLPIPPVGLYATPVGYGMY :. . :.:: . . . ..... .:. .. . :: NP_064 EAGNYSALQRMFPSPYFYHPSLLGSMDSTTAAAAAAAMYSSMYRTPPAPHPQLQRPLVPR 300 310 320 330 340 350 pF1KB8 HLS NP_064 VLIHGLGPGGQPALNPLSSPIPGTPHPR 360 370 380 >>NP_038463 (OMIM: 601881,611038) retinal homeobox prote (346 aa) initn: 258 init1: 258 opt: 299 Z-score: 231.5 bits: 50.9 E(85289): 3.7e-06 Smith-Waterman score: 308; 30.0% identity (53.2% similar) in 263 aa overlap (24-262:4-264) 10 20 30 40 50 pF1KB8 MASPSKGNDLFSPDEEGPAVVAGPGPGPGGAEG----AAEERRVKVSSLP--FSVEALMS :: .:. :.: :.. : .: :.::... NP_038 MHLPGCAPAMADGSFSLAGHLLRSPGGSTSRLHSIEAILG 10 20 30 40 60 70 80 90 100 pF1KB8 DKKPPKEASPLPAESASAGATLRPLLLSGH---------GAREAHSPGPLVKPFETASVK : . .::: .. :: : :... :.. . :.: : : NP_038 FTKDDGILGTFPAERGARGAKERDRRLGARPACPKAPEEGSEPSPPPAPAPAPEYEAPRP 50 60 70 80 90 100 110 120 130 140 150 160 pF1KB8 SENSEDGAAWMQEPGRYSPPPRHTSPTTCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQ .: : : :: : . . . .: .:. :: ::: :: ::: :.... NP_038 YCPKEPGEA-RPSPGLPVGPATGEAKLSEEEQPKKKHRRNRTTFTTYQLHELERAFEKSH 110 120 130 140 150 170 180 190 200 210 220 pF1KB8 YLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSSFSLPFP : .. : :.....:: :..:..:::::::: .: .. :. ..:. .:.: : : : NP_038 YPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEKLEVSSMKLQDSPLLSFSRSPPSA 160 170 180 190 200 210 230 240 250 260 pF1KB8 ISSPLQAA-----SIYGASYPFHRPVLPIPPVG----LYATPVGYGMYHLS ::: :. . :.. :.. . : : : : . : :.: NP_038 TLSPLGAGPGSGGGPAGGALPLESWLGPPLPGGGATALQSLP-GFGPPAQSLPASYTPPP 220 230 240 250 260 270 NP_038 PPPPFLNSPPLGPGLQPLAPPPPSYPCGPGFGDKFPLDEADPRNSSIAALRLKAKEHIQA 280 290 300 310 320 330 >>NP_001129743 (OMIM: 217095,611770) homeobox protein Nk (301 aa) initn: 295 init1: 242 opt: 295 Z-score: 229.4 bits: 50.3 E(85289): 4.9e-06 Smith-Waterman score: 295; 40.2% identity (64.4% similar) in 132 aa overlap (138-262:128-255) 110 120 130 140 150 160 pF1KB8 NSEDGAAWMQEPGRYSPPPRHTSPTTCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYL : . ::::. :. .:.:::::.:.:..:: NP_001 ASPLGGGTRVPERGVGNSGDSVRGGRSEQPKARQRRKPRVLFSQAQVLALERRFKQQRYL 100 110 120 130 140 150 170 180 190 200 210 220 pF1KB8 SIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSSFSLPF--- : :: ...:.:.:: ::::::::::: : :: .. . .:..:..:. : ..: NP_001 SAPEREHLASALQLTSTQVKIWFQNRRYKCKRQRQDK--SLELAGHPLTPRRVAVPVLVR 160 170 180 190 200 210 230 240 250 260 pF1KB8 ---PISSPLQAASIYGASYPFHRPVLPIPPVGLYA-TPVGYGMYHLS : .: .: . . :. : : : :. .: : : NP_001 DGKPCLGPGPGAPAFPS--PYSAAVSPYSCYGGYSGAPYGAGYGTCYAGAPSGPAPHTPL 220 230 240 250 260 270 NP_001 ASAGFGHGGQNATPQGHLAATLQGVRAW 280 290 300 >>NP_005510 (OMIM: 600647) homeobox protein HMX2 [Homo s (273 aa) initn: 292 init1: 237 opt: 291 Z-score: 227.1 bits: 49.8 E(85289): 6.5e-06 Smith-Waterman score: 291; 34.9% identity (54.5% similar) in 255 aa overlap (23-265:29-269) 10 20 30 40 pF1KB8 MASPSKGNDLFSPDEEGPAVVAGPGPGPGGAEG-AAEERRVKVSSL---P---F ::. .: : :..: ..::: : . NP_005 MGSKEDAGKGCPAAGGVSSFTIQSILGGGPSEAPREPVGWPARKRSLSVSSEEEEPDDGW 10 20 30 40 50 60 50 60 70 80 90 100 pF1KB8 SVEA-LMSDKKPPKEASPLPAESASAGATLRPLLLSGHGAREAHSPGPLVK-PFETASVK .. : . :.. ::: .: : .: : :: : . :: . : . NP_005 KAPACFCPDQHGPKEQGPKHHPPIPFPCLGTPKGSGGSG------PGGLERTPFLSPS-H 70 80 90 100 110 110 120 130 140 150 160 pF1KB8 SENSEDGAAWMQEPGRYSPPPRHTSPTTCTLRKHK--TNRKPRTPFTTSQLLALERKFRQ :. .:. . :. :: : : ... ...: :: :. ::. :: : . NP_005 SDFKEEKERLL--PAG-SPSPGSERPRDGGAERQAGAAKKKTRTVFSRSQVYQLESTFDM 120 130 140 150 160 170 170 180 190 200 210 220 pF1KB8 KQYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMA-AKPMLPSSFSL :.::: .::: ..:::.::::::: :::::: : :: :::: .:: :. . :. : NP_005 KRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAANMAHASAQTLVSMPL 180 190 200 210 220 230 230 240 250 260 pF1KB8 PFPISSPLQAASIYGASYPFHRPVLPIPPVGLYATPVGYGMYHLS : :: :.. . ..: : : : .: : :. :..:. NP_005 VFRDSSLLRVPVPRSLAFP--AP-LYYPGSNLSALPL-YNLYNKLDY 240 250 260 270 267 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 01:21:21 2016 done: Mon Nov 7 01:21:22 2016 Total Scan time: 8.890 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]