FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8921, 267 aa 1>>>pF1KB8921 267 - 267 aa - 267 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.7990+/-0.000747; mu= 5.8772+/- 0.045 mean_var=184.5384+/-37.546, 0's: 0 Z-trim(116.0): 171 B-trim: 10 in 1/53 Lambda= 0.094413 statistics sampled from 16361 (16545) to 16361 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.812), E-opt: 0.2 (0.508), width: 16 Scan time: 3.010 The best scores are: opt bits E(32554) CCDS4392.1 MSX2 gene_id:4488|Hs108|chr5 ( 267) 1777 253.2 1.4e-67 CCDS3378.2 MSX1 gene_id:4487|Hs108|chr4 ( 303) 835 125.0 6.3e-29 >>CCDS4392.1 MSX2 gene_id:4488|Hs108|chr5 (267 aa) initn: 1777 init1: 1777 opt: 1777 Z-score: 1327.0 bits: 253.2 E(32554): 1.4e-67 Smith-Waterman score: 1777; 99.6% identity (99.6% similar) in 267 aa overlap (1-267:1-267) 10 20 30 40 50 60 pF1KB8 MASPSKGNDLFSPDEEGPAVVAGPGPGPGGAEGAAEERRVKVSSLPFSVEALMSDKKPPK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 MASPSKGNDLFSPDEEGPAVVAGPGPGPGGAEGAAEERRVKVSSLPFSVEALMSDKKPPK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 EASPLPAESASAGATLRPLLLSGHGAREAHSPGPLVKPFETASVKSENSEDGAAWMQEPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 EASPLPAESASAGATLRPLLLSGHGAREAHSPGPLVKPFETASVKSENSEDGAAWMQEPG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 RYSPPPRHTSPTTCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLN :::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 RYSPPPRHMSPTTCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLN 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB8 LTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSSFSLPFPISSPLQAASIYGASY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 LTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSSFSLPFPISSPLQAASIYGASY 190 200 210 220 230 240 250 260 pF1KB8 PFHRPVLPIPPVGLYATPVGYGMYHLS ::::::::::::::::::::::::::: CCDS43 PFHRPVLPIPPVGLYATPVGYGMYHLS 250 260 >>CCDS3378.2 MSX1 gene_id:4487|Hs108|chr4 (303 aa) initn: 825 init1: 596 opt: 835 Z-score: 632.8 bits: 125.0 E(32554): 6.3e-29 Smith-Waterman score: 907; 58.9% identity (78.5% similar) in 275 aa overlap (16-267:31-303) 10 20 30 40 pF1KB8 MASPSKGNDLFSPDEEGPAVVAGPGPGPGGAEGAAEERRVKVSSL ..:...:. . . :. : .:. . :. : : CCDS33 MAPAADMTSLPLGVKVEDSAFGKPAGGGAGQAPSAAAATAAAMGADEEGAKPK-VSPSLL 10 20 30 40 50 50 60 70 80 90 pF1KB8 PFSVEALMSDKKPP--KEASPLPAESA-SAGATLRPLLL--SGHGAREA-HSPGPL---- ::::::::.:.. : ::.. :.:.. .::.. .:: . .. :: .: :: :: CCDS33 PFSVEALMADHRKPGAKESALAPSEGVQAAGGSAQPLGVPPGSLGAPDAPSSPRPLGHFS 60 70 80 90 100 110 100 110 120 130 140 pF1KB8 ----VKPFETASVKSENSE--DGAAWMQEPGRYSPPP-RHTSPTTCTLRKHKTNRKPRTP .: : : ::.:. : . . ::: : :.:::: :. :: .::::::::::::::: CCDS33 VGGLLKLPEDALVKAESPEKPERTPWMQSP-RFSPPPARRLSPPACTLRKHKTNRKPRTP 120 130 140 150 160 170 150 160 170 180 190 200 pF1KB8 FTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKL :::.:::::::::::::::::::::::::::.:::::::::::::::::::::::::::: CCDS33 FTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKL 180 190 200 210 220 230 210 220 230 240 250 260 pF1KB8 KMAAKPMLP-SSFSLPFPISSPLQAA-----SIYGASYPFHRPVLPIPPVGLYATPVGYG ::::::::: ..:.: ::...: .: :.:::: ::.: .::. :::::.. :::. CCDS33 KMAAKPMLPPAAFGLSFPLGGPAAVAAAAGASLYGASGPFQRAALPVAPVGLYTAHVGYS 240 250 260 270 280 290 pF1KB8 MYHLS ::::. CCDS33 MYHLT 300 267 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 01:21:20 2016 done: Mon Nov 7 01:21:21 2016 Total Scan time: 3.010 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]