FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6221, 301 aa 1>>>pF1KE6221 301 - 301 aa - 301 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.1896+/-0.000657; mu= 13.7709+/- 0.040 mean_var=115.1749+/-23.069, 0's: 0 Z-trim(114.8): 4 B-trim: 0 in 0/52 Lambda= 0.119508 statistics sampled from 15380 (15383) to 15380 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.8), E-opt: 0.2 (0.473), width: 16 Scan time: 2.300 The best scores are: opt bits E(32554) CCDS11158.1 SCO1 gene_id:6341|Hs108|chr17 ( 301) 2077 368.0 4.8e-102 CCDS14095.1 SCO2 gene_id:9997|Hs108|chr22 ( 266) 712 132.6 3.1e-31 >>CCDS11158.1 SCO1 gene_id:6341|Hs108|chr17 (301 aa) initn: 2077 init1: 2077 opt: 2077 Z-score: 1945.4 bits: 368.0 E(32554): 4.8e-102 Smith-Waterman score: 2077; 100.0% identity (100.0% similar) in 301 aa overlap (1-301:1-301) 10 20 30 40 50 60 pF1KE6 MAMLVLVPGRVMRPLGGQLWRFLPRGLEFWGPAEGTARVLLRQFCARQAEAWRASGRPGY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MAMLVLVPGRVMRPLGGQLWRFLPRGLEFWGPAEGTARVLLRQFCARQAEAWRASGRPGY 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 CLGTRPLSTARPPPPWSQKGPGDSTRPSKPGPVSWKSLAITFAIGGALLAGMKHVKKEKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 CLGTRPLSTARPPPPWSQKGPGDSTRPSKPGPVSWKSLAITFAIGGALLAGMKHVKKEKA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 EKLEKERQRHIGKPLLGGPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 EKLEKERQRHIGKPLLGGPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKM 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 IQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQVARA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 IQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQVARA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 YRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMRPYRKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 YRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMRPYRKK 250 260 270 280 290 300 pF1KE6 S : CCDS11 S >>CCDS14095.1 SCO2 gene_id:9997|Hs108|chr22 (266 aa) initn: 667 init1: 617 opt: 712 Z-score: 674.2 bits: 132.6 E(32554): 3.1e-31 Smith-Waterman score: 712; 44.1% identity (72.7% similar) in 227 aa overlap (76-298:36-262) 50 60 70 80 90 100 pF1KE6 ARQAEAWRASGRPGYCLGTRPLSTARPPPPW--SQKGPGDSTRPSKP-GPVSWKSLAITF : :..::... ..: :: : :: CCDS14 RSPTAWHRLSQLKPRVLPGTLGGQALHLRSWLLSRQGPAETGGQGQPQGPGLRTRLLITG 10 20 30 40 50 60 110 120 130 140 150 160 pF1KE6 AIGGALLAGMKHVKKEKAEKLEKERQRHIGKPLLG-GPFSLTTHTGERKTDKDYLGQWLL .:..: .. .. :: . ...: . . . .: : : : : :. . :. :::.: CCDS14 LFGAGLGGAWLALRAEKERLQQQKRTEALRQAAVGQGDFHLLDHRGRARCKADFRGQWVL 70 80 90 100 110 120 170 180 190 200 210 220 pF1KE6 IYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFS .:::::::::.::.::::..::: .... :: . :.::..::::: ::.: ::..: CCDS14 MYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFH 130 140 150 160 170 180 230 240 250 260 270 280 pF1KE6 PKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNK :.:.::::. ..: :....:::::. ::::::.::::::.: .::..::: : ::.:... CCDS14 PRLLGLTGSTKQVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSR 190 200 210 220 230 240 290 300 pF1KE6 RKGEIAASIATHMRPYRKKS .:. :. :: .: CCDS14 SAEQISDSVRRHMAAFRSVLS 250 260 301 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 11:12:47 2016 done: Tue Nov 8 11:12:47 2016 Total Scan time: 2.300 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]