FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE9660, 247 aa 1>>>pF1KE9660 247 - 247 aa - 247 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.7092+/-0.000437; mu= -0.2548+/- 0.027 mean_var=241.9722+/-48.089, 0's: 0 Z-trim(118.1): 2 B-trim: 19 in 1/55 Lambda= 0.082450 statistics sampled from 30691 (30692) to 30691 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.704), E-opt: 0.2 (0.36), width: 16 Scan time: 7.460 The best scores are: opt bits E(85289) NP_075060 (OMIM: 605607) centromere protein H [Hom ( 247) 1547 196.5 3.6e-50 >>NP_075060 (OMIM: 605607) centromere protein H [Homo sa (247 aa) initn: 1547 init1: 1547 opt: 1547 Z-score: 1021.8 bits: 196.5 E(85289): 3.6e-50 Smith-Waterman score: 1547; 100.0% identity (100.0% similar) in 247 aa overlap (1-247:1-247) 10 20 30 40 50 60 pF1KE9 MEEQPQMQDADEPADSGGEGRAGGPPQVAGAQAACSEDRMTLLLRLRAQTKQQLLEYKSM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_075 MEEQPQMQDADEPADSGGEGRAGGPPQVAGAQAACSEDRMTLLLRLRAQTKQQLLEYKSM 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 VDASEEKTPEQIMQEKQIEAKIEDLENEIEEVKVAFEIKKLALDRMRLSTALKKNLEKIS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_075 VDASEEKTPEQIMQEKQIEAKIEDLENEIEEVKVAFEIKKLALDRMRLSTALKKNLEKIS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 RQSSVLMDNMKHLLELNKLIMKSQQESWDLEEKLLDIRKKRLQLKQASESKLLEIQTEKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_075 RQSSVLMDNMKHLLELNKLIMKSQQESWDLEEKLLDIRKKRLQLKQASESKLLEIQTEKN 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE9 KQKIDLDSMENSERIKIIRQNLQMEIKITTVIQHVFQNLILGSKVNWAEDPALKEIVLQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_075 KQKIDLDSMENSERIKIIRQNLQMEIKITTVIQHVFQNLILGSKVNWAEDPALKEIVLQL 190 200 210 220 230 240 pF1KE9 EKNVDMM ::::::: NP_075 EKNVDMM 247 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 01:21:52 2016 done: Mon Nov 7 01:21:53 2016 Total Scan time: 7.460 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]