FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE9658, 211 aa 1>>>pF1KE9658 211 - 211 aa - 211 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.6218+/-0.000359; mu= 11.3868+/- 0.022 mean_var=62.2489+/-12.941, 0's: 0 Z-trim(113.5): 27 B-trim: 1008 in 1/52 Lambda= 0.162558 statistics sampled from 22875 (22888) to 22875 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.661), E-opt: 0.2 (0.268), width: 16 Scan time: 5.330 The best scores are: opt bits E(85289) NP_006332 (OMIM: 604094) mitotic spindle assembly ( 211) 1398 336.3 2.2e-92 XP_011538809 (OMIM: 604094) PREDICTED: mitotic spi ( 211) 1398 336.3 2.2e-92 NP_001120797 (OMIM: 604094) mitotic spindle assemb ( 211) 1398 336.3 2.2e-92 NP_002349 (OMIM: 601467) mitotic spindle assembly ( 205) 178 50.2 2.9e-06 >>NP_006332 (OMIM: 604094) mitotic spindle assembly chec (211 aa) initn: 1398 init1: 1398 opt: 1398 Z-score: 1779.6 bits: 336.3 E(85289): 2.2e-92 Smith-Waterman score: 1398; 100.0% identity (100.0% similar) in 211 aa overlap (1-211:1-211) 10 20 30 40 50 60 pF1KE9 MTTLTRQDLNFGQVVADVLCEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 MTTLTRQDLNFGQVVADVLCEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPEL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 NQYIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPVEKFVFEITQPPLLSISSDSLLSHVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 NQYIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPVEKFVFEITQPPLLSISSDSLLSHVE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 QLLRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFPWILADEQDVH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 QLLRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFPWILADEQDVH 130 140 150 160 170 180 190 200 210 pF1KE9 MHDPRLIPLKTMTSDILKMQLYVEERAHKGS ::::::::::::::::::::::::::::::: NP_006 MHDPRLIPLKTMTSDILKMQLYVEERAHKGS 190 200 210 >>XP_011538809 (OMIM: 604094) PREDICTED: mitotic spindle (211 aa) initn: 1398 init1: 1398 opt: 1398 Z-score: 1779.6 bits: 336.3 E(85289): 2.2e-92 Smith-Waterman score: 1398; 100.0% identity (100.0% similar) in 211 aa overlap (1-211:1-211) 10 20 30 40 50 60 pF1KE9 MTTLTRQDLNFGQVVADVLCEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MTTLTRQDLNFGQVVADVLCEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPEL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 NQYIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPVEKFVFEITQPPLLSISSDSLLSHVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 NQYIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPVEKFVFEITQPPLLSISSDSLLSHVE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 QLLRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFPWILADEQDVH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 QLLRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFPWILADEQDVH 130 140 150 160 170 180 190 200 210 pF1KE9 MHDPRLIPLKTMTSDILKMQLYVEERAHKGS ::::::::::::::::::::::::::::::: XP_011 MHDPRLIPLKTMTSDILKMQLYVEERAHKGS 190 200 210 >>NP_001120797 (OMIM: 604094) mitotic spindle assembly c (211 aa) initn: 1398 init1: 1398 opt: 1398 Z-score: 1779.6 bits: 336.3 E(85289): 2.2e-92 Smith-Waterman score: 1398; 100.0% identity (100.0% similar) in 211 aa overlap (1-211:1-211) 10 20 30 40 50 60 pF1KE9 MTTLTRQDLNFGQVVADVLCEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MTTLTRQDLNFGQVVADVLCEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPEL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 NQYIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPVEKFVFEITQPPLLSISSDSLLSHVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 NQYIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPVEKFVFEITQPPLLSISSDSLLSHVE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 QLLRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFPWILADEQDVH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QLLRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFPWILADEQDVH 130 140 150 160 170 180 190 200 210 pF1KE9 MHDPRLIPLKTMTSDILKMQLYVEERAHKGS ::::::::::::::::::::::::::::::: NP_001 MHDPRLIPLKTMTSDILKMQLYVEERAHKGS 190 200 210 >>NP_002349 (OMIM: 601467) mitotic spindle assembly chec (205 aa) initn: 161 init1: 136 opt: 178 Z-score: 233.5 bits: 50.2 E(85289): 2.9e-06 Smith-Waterman score: 178; 27.0% identity (60.3% similar) in 141 aa overlap (16-152:17-157) 10 20 30 40 50 pF1KE9 MTTLTRQDLNFGQVVADVLCEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPE :... ::. ... ::: : .:: : . .::.. . .. : NP_002 MALQLSREQGITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLE 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE9 LNQYIQDTLHCVKPLLEKNDVEKVVVVILDKEHRPV-EKFVFEITQPPLL---SISSDSL : .:...... .: : : .:.:.:::: . : : :.. :.: : .. NP_002 LIKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKS 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE9 LSHVEQLLRAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFPWILAD . ... .:. : .:.. . : .:.: .:..: NP_002 QKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEE 130 140 150 160 170 180 180 190 200 210 pF1KE9 EQDVHMHDPRLIPLKTMTSDILKMQLYVEERAHKGS NP_002 VRLRSFTTTIHKVNSMVAYKIPVND 190 200 211 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 22:31:43 2016 done: Mon Nov 7 22:31:44 2016 Total Scan time: 5.330 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]