FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6717, 738 aa 1>>>pF1KE6717 738 - 738 aa - 738 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.8068+/-0.00043; mu= 18.2369+/- 0.027 mean_var=82.7332+/-16.429, 0's: 0 Z-trim(111.5): 31 B-trim: 696 in 1/56 Lambda= 0.141005 statistics sampled from 20104 (20111) to 20104 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.596), E-opt: 0.2 (0.236), width: 16 Scan time: 11.750 The best scores are: opt bits E(85289) NP_031383 (OMIM: 606974) conserved oligomeric Golg ( 738) 4765 979.8 0 NP_001138508 (OMIM: 606974) conserved oligomeric G ( 737) 4748 976.3 0 >>NP_031383 (OMIM: 606974) conserved oligomeric Golgi co (738 aa) initn: 4765 init1: 4765 opt: 4765 Z-score: 5237.7 bits: 979.8 E(85289): 0 Smith-Waterman score: 4765; 100.0% identity (100.0% similar) in 738 aa overlap (1-738:1-738) 10 20 30 40 50 60 pF1KE6 MEKSRMNLPKGPDTLCFDKDEFMKEDFDVDHFVSDCRKRVQLEELRDDLELYYKLLKTAM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_031 MEKSRMNLPKGPDTLCFDKDEFMKEDFDVDHFVSDCRKRVQLEELRDDLELYYKLLKTAM 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 VELINKDYADFVNLSTNLVGMDKALNQLSVPLGQLREEVLSLRSSVSEGIRAVDERMSKQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_031 VELINKDYADFVNLSTNLVGMDKALNQLSVPLGQLREEVLSLRSSVSEGIRAVDERMSKQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 EDIRKKKMCVLRLIQVIRSVEKIEKILNSQSSKETSALEASSPLLTGQILERIATEFNQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_031 EDIRKKKMCVLRLIQVIRSVEKIEKILNSQSSKETSALEASSPLLTGQILERIATEFNQL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 QFHAVQSKGMPLLDKVRPRIAGITAMLQQSLEGLLLEGLQTSDVDIIRHCLRTYATIDKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_031 QFHAVQSKGMPLLDKVRPRIAGITAMLQQSLEGLLLEGLQTSDVDIIRHCLRTYATIDKT 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 RDAEALVGQVLVKPYIDEVIIEQFVESHPNGLQVMYNKLLEFVPHHCRLLREVTGGAISS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_031 RDAEALVGQVLVKPYIDEVIIEQFVESHPNGLQVMYNKLLEFVPHHCRLLREVTGGAISS 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE6 EKGNTVPGYDFLVNSVWPQIVQGLEEKLPSLFNPGNPDAFHEKYTISMDFVRRLERQCGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_031 EKGNTVPGYDFLVNSVWPQIVQGLEEKLPSLFNPGNPDAFHEKYTISMDFVRRLERQCGS 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE6 QASVKRLRAHPAYHSFNKKWNLPVYFQIRFREIAGSLEAALTDVLEDAPAESPYCLLASH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_031 QASVKRLRAHPAYHSFNKKWNLPVYFQIRFREIAGSLEAALTDVLEDAPAESPYCLLASH 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE6 RTWSSLRRCWSDEMFLPLLVHRLWRLTLQILARYSVFVNELSLRPISNESPKEIKKPLVT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_031 RTWSSLRRCWSDEMFLPLLVHRLWRLTLQILARYSVFVNELSLRPISNESPKEIKKPLVT 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE6 GSKEPSITQGNTEDQGSGPSETKPVVSISRTQLVYVVADLDKLQEQLPELLEIIKPKLEM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_031 GSKEPSITQGNTEDQGSGPSETKPVVSISRTQLVYVVADLDKLQEQLPELLEIIKPKLEM 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE6 IGFKNFSSISAALEDSQSSFSACVPSLSSKIIQDLSDSCFGFLKSALEVPRLYRRTNKEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_031 IGFKNFSSISAALEDSQSSFSACVPSLSSKIIQDLSDSCFGFLKSALEVPRLYRRTNKEV 550 560 570 580 590 600 610 620 630 640 650 660 pF1KE6 PTTASSYVDSALKPLFQLQSGHKDKLKQAIIQQWLEGTLSESTHKYYETVSDVLNSVKKM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_031 PTTASSYVDSALKPLFQLQSGHKDKLKQAIIQQWLEGTLSESTHKYYETVSDVLNSVKKM 610 620 630 640 650 660 670 680 690 700 710 720 pF1KE6 EESLKRLKQARKTTPANPVGPSGGMSDDDKIRLQLALDVEYLGEQIQKLGLQASDIKSFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_031 EESLKRLKQARKTTPANPVGPSGGMSDDDKIRLQLALDVEYLGEQIQKLGLQASDIKSFS 670 680 690 700 710 720 730 pF1KE6 ALAELVAAAKDQATAEQP :::::::::::::::::: NP_031 ALAELVAAAKDQATAEQP 730 >>NP_001138508 (OMIM: 606974) conserved oligomeric Golgi (737 aa) initn: 3587 init1: 3587 opt: 4748 Z-score: 5219.1 bits: 976.3 E(85289): 0 Smith-Waterman score: 4748; 99.9% identity (99.9% similar) in 738 aa overlap (1-738:1-737) 10 20 30 40 50 60 pF1KE6 MEKSRMNLPKGPDTLCFDKDEFMKEDFDVDHFVSDCRKRVQLEELRDDLELYYKLLKTAM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MEKSRMNLPKGPDTLCFDKDEFMKEDFDVDHFVSDCRKRVQLEELRDDLELYYKLLKTAM 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 VELINKDYADFVNLSTNLVGMDKALNQLSVPLGQLREEVLSLRSSVSEGIRAVDERMSKQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VELINKDYADFVNLSTNLVGMDKALNQLSVPLGQLREEVLSLRSSVSEGIRAVDERMSKQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 EDIRKKKMCVLRLIQVIRSVEKIEKILNSQSSKETSALEASSPLLTGQILERIATEFNQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EDIRKKKMCVLRLIQVIRSVEKIEKILNSQSSKETSALEASSPLLTGQILERIATEFNQL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 QFHAVQSKGMPLLDKVRPRIAGITAMLQQSLEGLLLEGLQTSDVDIIRHCLRTYATIDKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QFHAVQSKGMPLLDKVRPRIAGITAMLQQSLEGLLLEGLQTSDVDIIRHCLRTYATIDKT 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 RDAEALVGQVLVKPYIDEVIIEQFVESHPNGLQVMYNKLLEFVPHHCRLLREVTGGAISS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RDAEALVGQVLVKPYIDEVIIEQFVESHPNGLQVMYNKLLEFVPHHCRLLREVTGGAISS 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE6 EKGNTVPGYDFLVNSVWPQIVQGLEEKLPSLFNPGNPDAFHEKYTISMDFVRRLERQCGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EKGNTVPGYDFLVNSVWPQIVQGLEEKLPSLFNPGNPDAFHEKYTISMDFVRRLERQCGS 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE6 QASVKRLRAHPAYHSFNKKWNLPVYFQIRFREIAGSLEAALTDVLEDAPAESPYCLLASH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QASVKRLRAHPAYHSFNKKWNLPVYFQIRFREIAGSLEAALTDVLEDAPAESPYCLLASH 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE6 RTWSSLRRCWSDEMFLPLLVHRLWRLTLQILARYSVFVNELSLRPISNESPKEIKKPLVT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RTWSSLRRCWSDEMFLPLLVHRLWRLTLQILARYSVFVNELSLRPISNESPKEIKKPLVT 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE6 GSKEPSITQGNTEDQGSGPSETKPVVSISRTQLVYVVADLDKLQEQLPELLEIIKPKLEM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GSKEPSITQGNTEDQGSGPSETKPVVSISRTQLVYVVADLDKLQEQLPELLEIIKPKLEM 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE6 IGFKNFSSISAALEDSQSSFSACVPSLSSKIIQDLSDSCFGFLKSALEVPRLYRRTNKEV ::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IGFKNFSSISA-LEDSQSSFSACVPSLSSKIIQDLSDSCFGFLKSALEVPRLYRRTNKEV 550 560 570 580 590 610 620 630 640 650 660 pF1KE6 PTTASSYVDSALKPLFQLQSGHKDKLKQAIIQQWLEGTLSESTHKYYETVSDVLNSVKKM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PTTASSYVDSALKPLFQLQSGHKDKLKQAIIQQWLEGTLSESTHKYYETVSDVLNSVKKM 600 610 620 630 640 650 670 680 690 700 710 720 pF1KE6 EESLKRLKQARKTTPANPVGPSGGMSDDDKIRLQLALDVEYLGEQIQKLGLQASDIKSFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EESLKRLKQARKTTPANPVGPSGGMSDDDKIRLQLALDVEYLGEQIQKLGLQASDIKSFS 660 670 680 690 700 710 730 pF1KE6 ALAELVAAAKDQATAEQP :::::::::::::::::: NP_001 ALAELVAAAKDQATAEQP 720 730 738 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 15:40:20 2016 done: Tue Nov 8 15:40:22 2016 Total Scan time: 11.750 Total Display time: 0.040 Function used was FASTA [36.3.4 Apr, 2011]