Result of FASTA (omim) for
pFN21AB6103
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6103, 577 aa
1>>>pF1KB6103 577 - 577 aa - 577 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.5882+/-0.000468; mu= 7.4485+/- 0.029
mean_var=118.9622+/-23.815, 0's: 0 Z-trim(111.6): 32 B-trim: 64 in 1/50
Lambda= 0.117590
statistics sampled from 20193 (20214) to 20193 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.584), E-opt: 0.2 (0.237), width: 16
Scan time: 8.440
The best scores are: opt bits E(85289)
XP_006712618 (OMIM: 601182) PREDICTED: origin reco ( 577) 3717 642.4 1.2e-183
NP_006181 (OMIM: 601182) origin recognition comple ( 577) 3717 642.4 1.2e-183
XP_011509554 (OMIM: 601182) PREDICTED: origin reco ( 597) 3016 523.5 7.8e-148
XP_011509555 (OMIM: 601182) PREDICTED: origin reco ( 597) 3016 523.5 7.8e-148
>>XP_006712618 (OMIM: 601182) PREDICTED: origin recognit (577 aa)
initn: 3717 init1: 3717 opt: 3717 Z-score: 3418.1 bits: 642.4 E(85289): 1.2e-183
Smith-Waterman score: 3717; 100.0% identity (100.0% similar) in 577 aa overlap (1-577:1-577)
10 20 30 40 50 60
pF1KB6 MSKPELKEDKMLEVHFVGDDDVLNHILDREGGAKLKKERAQLLVNPKKIIKKPEYDLEED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MSKPELKEDKMLEVHFVGDDDVLNHILDREGGAKLKKERAQLLVNPKKIIKKPEYDLEED
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 DQEVLKDQNYVEIMGRDVQESLKNGSATGGGNKVYSFQNRKHSEKMAKLASELAKTPQKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DQEVLKDQNYVEIMGRDVQESLKNGSATGGGNKVYSFQNRKHSEKMAKLASELAKTPQKS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 VSFSLKNDPEITINVPQSSKGHSASDKVQPKNNDKSEFLSTAPRSLRKRLIVPRSHSDSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VSFSLKNDPEITINVPQSSKGHSASDKVQPKNNDKSEFLSTAPRSLRKRLIVPRSHSDSE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 SEYSASNSEDDEGVAQEHEEDTNAVIFSQKIQAQNRVVSAPVGKETPSKRMKRDKTSDLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SEYSASNSEDDEGVAQEHEEDTNAVIFSQKIQAQNRVVSAPVGKETPSKRMKRDKTSDLV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 EEYFEAHSSSKVLTSDRTLQKLKRAKLDQQTLRNLLSKVSPSFSAELKQLNQQYEKLFHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EEYFEAHSSSKVLTSDRTLQKLKRAKLDQQTLRNLLSKVSPSFSAELKQLNQQYEKLFHK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 WMLQLHLGFNIVLYGLGSKRDLLERFRTTMLQDSIHVVINGFFPGISVKSVLNSITEEVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 WMLQLHLGFNIVLYGLGSKRDLLERFRTTMLQDSIHVVINGFFPGISVKSVLNSITEEVL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB6 DHMGTFRSILDQLDWIVNKFKEDSSLELFLLIHNLDSQMLRGEKSQQIIGQLSSLHNIYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DHMGTFRSILDQLDWIVNKFKEDSSLELFLLIHNLDSQMLRGEKSQQIIGQLSSLHNIYL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB6 IASIDHLNAPLMWDHAKQSLFNWLWYETTTYSPYTEETSYENSLLVKQSGSLPLSSLTHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 IASIDHLNAPLMWDHAKQSLFNWLWYETTTYSPYTEETSYENSLLVKQSGSLPLSSLTHV
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB6 LRSLTPNARGIFRLLIKYQLDNQDNPSYIGLSFQDFYQQCREAFLVNSDLTLRAQLTEFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LRSLTPNARGIFRLLIKYQLDNQDNPSYIGLSFQDFYQQCREAFLVNSDLTLRAQLTEFR
490 500 510 520 530 540
550 560 570
pF1KB6 DHKLIRTKKGTDGVEYLLIPVDNGTLTDFLEKEEEEA
:::::::::::::::::::::::::::::::::::::
XP_006 DHKLIRTKKGTDGVEYLLIPVDNGTLTDFLEKEEEEA
550 560 570
>>NP_006181 (OMIM: 601182) origin recognition complex su (577 aa)
initn: 3717 init1: 3717 opt: 3717 Z-score: 3418.1 bits: 642.4 E(85289): 1.2e-183
Smith-Waterman score: 3717; 100.0% identity (100.0% similar) in 577 aa overlap (1-577:1-577)
10 20 30 40 50 60
pF1KB6 MSKPELKEDKMLEVHFVGDDDVLNHILDREGGAKLKKERAQLLVNPKKIIKKPEYDLEED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MSKPELKEDKMLEVHFVGDDDVLNHILDREGGAKLKKERAQLLVNPKKIIKKPEYDLEED
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 DQEVLKDQNYVEIMGRDVQESLKNGSATGGGNKVYSFQNRKHSEKMAKLASELAKTPQKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 DQEVLKDQNYVEIMGRDVQESLKNGSATGGGNKVYSFQNRKHSEKMAKLASELAKTPQKS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 VSFSLKNDPEITINVPQSSKGHSASDKVQPKNNDKSEFLSTAPRSLRKRLIVPRSHSDSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 VSFSLKNDPEITINVPQSSKGHSASDKVQPKNNDKSEFLSTAPRSLRKRLIVPRSHSDSE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 SEYSASNSEDDEGVAQEHEEDTNAVIFSQKIQAQNRVVSAPVGKETPSKRMKRDKTSDLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 SEYSASNSEDDEGVAQEHEEDTNAVIFSQKIQAQNRVVSAPVGKETPSKRMKRDKTSDLV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 EEYFEAHSSSKVLTSDRTLQKLKRAKLDQQTLRNLLSKVSPSFSAELKQLNQQYEKLFHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 EEYFEAHSSSKVLTSDRTLQKLKRAKLDQQTLRNLLSKVSPSFSAELKQLNQQYEKLFHK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 WMLQLHLGFNIVLYGLGSKRDLLERFRTTMLQDSIHVVINGFFPGISVKSVLNSITEEVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 WMLQLHLGFNIVLYGLGSKRDLLERFRTTMLQDSIHVVINGFFPGISVKSVLNSITEEVL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB6 DHMGTFRSILDQLDWIVNKFKEDSSLELFLLIHNLDSQMLRGEKSQQIIGQLSSLHNIYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 DHMGTFRSILDQLDWIVNKFKEDSSLELFLLIHNLDSQMLRGEKSQQIIGQLSSLHNIYL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB6 IASIDHLNAPLMWDHAKQSLFNWLWYETTTYSPYTEETSYENSLLVKQSGSLPLSSLTHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 IASIDHLNAPLMWDHAKQSLFNWLWYETTTYSPYTEETSYENSLLVKQSGSLPLSSLTHV
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB6 LRSLTPNARGIFRLLIKYQLDNQDNPSYIGLSFQDFYQQCREAFLVNSDLTLRAQLTEFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LRSLTPNARGIFRLLIKYQLDNQDNPSYIGLSFQDFYQQCREAFLVNSDLTLRAQLTEFR
490 500 510 520 530 540
550 560 570
pF1KB6 DHKLIRTKKGTDGVEYLLIPVDNGTLTDFLEKEEEEA
:::::::::::::::::::::::::::::::::::::
NP_006 DHKLIRTKKGTDGVEYLLIPVDNGTLTDFLEKEEEEA
550 560 570
>>XP_011509554 (OMIM: 601182) PREDICTED: origin recognit (597 aa)
initn: 3703 init1: 3007 opt: 3016 Z-score: 2775.1 bits: 523.5 E(85289): 7.8e-148
Smith-Waterman score: 3667; 96.6% identity (96.6% similar) in 597 aa overlap (1-577:1-597)
10 20 30 40 50 60
pF1KB6 MSKPELKEDKMLEVHFVGDDDVLNHILDREGGAKLKKERAQLLVNPKKIIKKPEYDLEED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSKPELKEDKMLEVHFVGDDDVLNHILDREGGAKLKKERAQLLVNPKKIIKKPEYDLEED
10 20 30 40 50 60
70 80 90 100
pF1KB6 DQEVLKDQNYVEIMGRDVQESLKNGSATGGGNKVYSFQNRKHSEKMAKL-----------
:::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DQEVLKDQNYVEIMGRDVQESLKNGSATGGGNKVYSFQNRKHSEKMAKLDLTFWPFFLTP
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB6 ---------ASELAKTPQKSVSFSLKNDPEITINVPQSSKGHSASDKVQPKNNDKSEFLS
:::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HQRCASTIYASELAKTPQKSVSFSLKNDPEITINVPQSSKGHSASDKVQPKNNDKSEFLS
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB6 TAPRSLRKRLIVPRSHSDSESEYSASNSEDDEGVAQEHEEDTNAVIFSQKIQAQNRVVSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TAPRSLRKRLIVPRSHSDSESEYSASNSEDDEGVAQEHEEDTNAVIFSQKIQAQNRVVSA
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB6 PVGKETPSKRMKRDKTSDLVEEYFEAHSSSKVLTSDRTLQKLKRAKLDQQTLRNLLSKVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PVGKETPSKRMKRDKTSDLVEEYFEAHSSSKVLTSDRTLQKLKRAKLDQQTLRNLLSKVS
250 260 270 280 290 300
290 300 310 320 330 340
pF1KB6 PSFSAELKQLNQQYEKLFHKWMLQLHLGFNIVLYGLGSKRDLLERFRTTMLQDSIHVVIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PSFSAELKQLNQQYEKLFHKWMLQLHLGFNIVLYGLGSKRDLLERFRTTMLQDSIHVVIN
310 320 330 340 350 360
350 360 370 380 390 400
pF1KB6 GFFPGISVKSVLNSITEEVLDHMGTFRSILDQLDWIVNKFKEDSSLELFLLIHNLDSQML
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GFFPGISVKSVLNSITEEVLDHMGTFRSILDQLDWIVNKFKEDSSLELFLLIHNLDSQML
370 380 390 400 410 420
410 420 430 440 450 460
pF1KB6 RGEKSQQIIGQLSSLHNIYLIASIDHLNAPLMWDHAKQSLFNWLWYETTTYSPYTEETSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RGEKSQQIIGQLSSLHNIYLIASIDHLNAPLMWDHAKQSLFNWLWYETTTYSPYTEETSY
430 440 450 460 470 480
470 480 490 500 510 520
pF1KB6 ENSLLVKQSGSLPLSSLTHVLRSLTPNARGIFRLLIKYQLDNQDNPSYIGLSFQDFYQQC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ENSLLVKQSGSLPLSSLTHVLRSLTPNARGIFRLLIKYQLDNQDNPSYIGLSFQDFYQQC
490 500 510 520 530 540
530 540 550 560 570
pF1KB6 REAFLVNSDLTLRAQLTEFRDHKLIRTKKGTDGVEYLLIPVDNGTLTDFLEKEEEEA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 REAFLVNSDLTLRAQLTEFRDHKLIRTKKGTDGVEYLLIPVDNGTLTDFLEKEEEEA
550 560 570 580 590
>>XP_011509555 (OMIM: 601182) PREDICTED: origin recognit (597 aa)
initn: 3703 init1: 3007 opt: 3016 Z-score: 2775.1 bits: 523.5 E(85289): 7.8e-148
Smith-Waterman score: 3667; 96.6% identity (96.6% similar) in 597 aa overlap (1-577:1-597)
10 20 30 40 50 60
pF1KB6 MSKPELKEDKMLEVHFVGDDDVLNHILDREGGAKLKKERAQLLVNPKKIIKKPEYDLEED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSKPELKEDKMLEVHFVGDDDVLNHILDREGGAKLKKERAQLLVNPKKIIKKPEYDLEED
10 20 30 40 50 60
70 80 90 100
pF1KB6 DQEVLKDQNYVEIMGRDVQESLKNGSATGGGNKVYSFQNRKHSEKMAKL-----------
:::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DQEVLKDQNYVEIMGRDVQESLKNGSATGGGNKVYSFQNRKHSEKMAKLDLTFWPFFLTP
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB6 ---------ASELAKTPQKSVSFSLKNDPEITINVPQSSKGHSASDKVQPKNNDKSEFLS
:::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HQRCASTIYASELAKTPQKSVSFSLKNDPEITINVPQSSKGHSASDKVQPKNNDKSEFLS
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB6 TAPRSLRKRLIVPRSHSDSESEYSASNSEDDEGVAQEHEEDTNAVIFSQKIQAQNRVVSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TAPRSLRKRLIVPRSHSDSESEYSASNSEDDEGVAQEHEEDTNAVIFSQKIQAQNRVVSA
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB6 PVGKETPSKRMKRDKTSDLVEEYFEAHSSSKVLTSDRTLQKLKRAKLDQQTLRNLLSKVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PVGKETPSKRMKRDKTSDLVEEYFEAHSSSKVLTSDRTLQKLKRAKLDQQTLRNLLSKVS
250 260 270 280 290 300
290 300 310 320 330 340
pF1KB6 PSFSAELKQLNQQYEKLFHKWMLQLHLGFNIVLYGLGSKRDLLERFRTTMLQDSIHVVIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PSFSAELKQLNQQYEKLFHKWMLQLHLGFNIVLYGLGSKRDLLERFRTTMLQDSIHVVIN
310 320 330 340 350 360
350 360 370 380 390 400
pF1KB6 GFFPGISVKSVLNSITEEVLDHMGTFRSILDQLDWIVNKFKEDSSLELFLLIHNLDSQML
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GFFPGISVKSVLNSITEEVLDHMGTFRSILDQLDWIVNKFKEDSSLELFLLIHNLDSQML
370 380 390 400 410 420
410 420 430 440 450 460
pF1KB6 RGEKSQQIIGQLSSLHNIYLIASIDHLNAPLMWDHAKQSLFNWLWYETTTYSPYTEETSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RGEKSQQIIGQLSSLHNIYLIASIDHLNAPLMWDHAKQSLFNWLWYETTTYSPYTEETSY
430 440 450 460 470 480
470 480 490 500 510 520
pF1KB6 ENSLLVKQSGSLPLSSLTHVLRSLTPNARGIFRLLIKYQLDNQDNPSYIGLSFQDFYQQC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ENSLLVKQSGSLPLSSLTHVLRSLTPNARGIFRLLIKYQLDNQDNPSYIGLSFQDFYQQC
490 500 510 520 530 540
530 540 550 560 570
pF1KB6 REAFLVNSDLTLRAQLTEFRDHKLIRTKKGTDGVEYLLIPVDNGTLTDFLEKEEEEA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 REAFLVNSDLTLRAQLTEFRDHKLIRTKKGTDGVEYLLIPVDNGTLTDFLEKEEEEA
550 560 570 580 590
577 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 08:14:21 2016 done: Sat Nov 5 08:14:22 2016
Total Scan time: 8.440 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]