FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6307, 314 aa 1>>>pF1KE6307 314 - 314 aa - 314 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2032+/-0.000443; mu= 16.5601+/- 0.027 mean_var=72.5749+/-14.434, 0's: 0 Z-trim(110.7): 91 B-trim: 742 in 2/49 Lambda= 0.150550 statistics sampled from 19022 (19107) to 19022 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.589), E-opt: 0.2 (0.224), width: 16 Scan time: 5.810 The best scores are: opt bits E(85289) NP_002345 (OMIM: 185535,613217,613244) epithelial ( 314) 2046 453.9 2e-127 NP_002344 (OMIM: 137290,204870) tumor-associated c ( 323) 1012 229.3 8.1e-60 NP_004589 (OMIM: 602264) testican-1 precursor [Hom ( 439) 141 40.2 0.0092 >>NP_002345 (OMIM: 185535,613217,613244) epithelial cell (314 aa) initn: 2046 init1: 2046 opt: 2046 Z-score: 2408.8 bits: 453.9 E(85289): 2e-127 Smith-Waterman score: 2046; 99.7% identity (99.7% similar) in 314 aa overlap (1-314:1-314) 10 20 30 40 50 60 pF1KE6 MAPPQVLAFGLLLAAATATFAAAQEECVCENYKLAVNCFVNNNRQCQCTSVGAQNTVICS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 MAPPQVLAFGLLLAAATATFAAAQEECVCENYKLAVNCFVNNNRQCQCTSVGAQNTVICS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 KLAAKCLVMKAEMNGSKLGRRAKPEGALQNNDGLYDPDCDESGLFKAKQCNGTSTCWCVN :::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::: NP_002 KLAAKCLVMKAEMNGSKLGRRAKPEGALQNNDGLYDPDCDESGLFKAKQCNGTSMCWCVN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 TAGVRRTDKDTEITCSERVRTYWIIIELKHKAREKPYDSKSLRTALQKEITTRYQLDPKF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 TAGVRRTDKDTEITCSERVRTYWIIIELKHKAREKPYDSKSLRTALQKEITTRYQLDPKF 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 ITSILYENNVITIDLVQNSSQKTQNDVDIADVAYYFEKDVKGESLFHSKKMDLTVNGEQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 ITSILYENNVITIDLVQNSSQKTQNDVDIADVAYYFEKDVKGESLFHSKKMDLTVNGEQL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 DLDPGQTLIYYVDEKAPEFSMQGLKAGVIAVIVVVVIAVVAGIVVLVISRKKRMAKYEKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 DLDPGQTLIYYVDEKAPEFSMQGLKAGVIAVIVVVVIAVVAGIVVLVISRKKRMAKYEKA 250 260 270 280 290 300 310 pF1KE6 EIKEMGEMHRELNA :::::::::::::: NP_002 EIKEMGEMHRELNA 310 >>NP_002344 (OMIM: 137290,204870) tumor-associated calci (323 aa) initn: 922 init1: 415 opt: 1012 Z-score: 1194.9 bits: 229.3 E(85289): 8.1e-60 Smith-Waterman score: 1012; 49.7% identity (78.8% similar) in 316 aa overlap (1-311:7-320) 10 20 30 40 50 pF1KE6 MAPPQV-LAFGLLLAAATATFAAAQEECVCENYKLAVNCFVNNNRQCQCTSVGA .::: . : . ::. ::.. .:::..:.: . :..: . . .::: ..:. NP_002 MARGPGLAPPPLRLPLLLLVLAAVTGHTAAQDNCTCPTNKMTVCSPDGPGGRCQCRALGS 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE6 QNTVICSKLAAKCLVMKAEMNGSKLGRR-AKP-EGALQNNDGLYDPDCDESGLFKAKQCN .: :: :..:::..::.:.. : .: ..: : :: .:::::::::: : :::.::: NP_002 GMAVDCSTLTSKCLLLKARMSAPKNARTLVRPSEHALVDNDGLYDPDCDPEGRFKARQCN 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE6 GTSTCWCVNTAGVRRTDK-DTEITCSERVRTYWIIIELKHKAREKPYDSKSLRTALQKEI ::.:::::..::::::: : . :.: :::. :.:.:.:. .. ..: . :.. . NP_002 QTSVCWCVNSVGVRRTDKGDLSLRCDELVRTHHILIDLRHRPTAGAFNHSDLDAELRRLF 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE6 TTRYQLDPKFITSILYENNVITIDLVQNSSQKTQNDVDIADVAYYFEKDVKGESLFHSKK ::.: :::.... ::. .: :.: ::.:::. .::::.:.:::::.:.::::::... NP_002 RERYRLHPKFVAAVHYEQPTIQIELRQNTSQKAAGDVDIGDAAYYFERDIKGESLFQGRG 190 200 210 220 230 240 240 250 260 270 280 pF1KE6 -MDLTVNGEQLDLDPGQTLIYYVDEKAPEFSMQGLKAGVIAVIVVVVIAVVAGIVVLVIS .:: : :: :... .:::::.:: :.:::. : ::.::::::::.:.:::..::::. NP_002 GLDLRVRGEPLQVE--RTLIYYLDEIPPKFSMKRLTAGLIAVIVVVVVALVAGMAVLVIT 250 260 270 280 290 290 300 310 pF1KE6 RKKRMAKYEKAEIKEMGEMHRELNA ... .::.:.::::.::...: NP_002 NRRKSGKYKKVEIKELGELRKEPSL 300 310 320 >>NP_004589 (OMIM: 602264) testican-1 precursor [Homo sa (439 aa) initn: 104 init1: 53 opt: 141 Z-score: 170.6 bits: 40.2 E(85289): 0.0092 Smith-Waterman score: 154; 26.0% identity (50.7% similar) in 146 aa overlap (7-141:258-382) 10 20 pF1KE6 MAPPQVLAFGLLL--AAATATFAAAQEECV------ . . ::: . .: . : :. NP_004 TSSNTAQGRFDTSILPICKDSLGWMFNKLDMNYDLLLDPSEINAIYLDKYEPCIKPLFNS 230 240 250 260 270 280 30 40 50 60 70 80 pF1KE6 CENYKLAVNCFVNNNRQCQCTSVGAQNTVICSKLAAKCLVMKAEMNGSKLGRRAKPEGAL :...: . ..::. : : . . . : . ::: .. . .: .. : NP_004 CDSFK---DGKLSNNEWCYCFQ--KPGGLPC----------QNEMN--RIQKLSKGKSLL 290 300 310 320 330 90 100 110 120 130 140 pF1KE6 QNNDGLYDPDCDESGLFKAKQCNG-TSTCWCVNTAG--VRRTDKDTEITCSERVRTYWII : . : :.: : .:: ::.: :. ::::. : . . :. ..: :. .: NP_004 ----GAFIPRCNEEGYYKATQCHGSTGQCWCVDKYGNELAGSRKQGAVSCEEEQETSGDF 340 350 360 370 380 150 160 170 180 190 200 pF1KE6 IELKHKAREKPYDSKSLRTALQKEITTRYQLDPKFITSILYENNVITIDLVQNSSQKTQN NP_004 GSGGSVVLLDDLEYERELGPKDKEGKLRVHTRAVTEDDEDEDDDKEDEVGYIW 390 400 410 420 430 314 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 19:35:15 2016 done: Mon Nov 7 19:35:16 2016 Total Scan time: 5.810 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]