FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6416, 549 aa 1>>>pF1KE6416 549 - 549 aa - 549 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4190+/-0.00091; mu= 17.4128+/- 0.054 mean_var=57.7241+/-11.649, 0's: 0 Z-trim(104.7): 22 B-trim: 0 in 0/48 Lambda= 0.168809 statistics sampled from 8030 (8038) to 8030 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.61), E-opt: 0.2 (0.247), width: 16 Scan time: 3.100 The best scores are: opt bits E(32554) CCDS3173.1 SLC33A1 gene_id:9197|Hs108|chr3 ( 549) 3662 900.3 0 >>CCDS3173.1 SLC33A1 gene_id:9197|Hs108|chr3 (549 aa) initn: 3662 init1: 3662 opt: 3662 Z-score: 4812.9 bits: 900.3 E(32554): 0 Smith-Waterman score: 3662; 100.0% identity (100.0% similar) in 549 aa overlap (1-549:1-549) 10 20 30 40 50 60 pF1KE6 MSPTISHKDSSRQRRPGNFSHSLDMKSGPLPPGGWDDSHLDSAGREGDREALLGDTGTGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 MSPTISHKDSSRQRRPGNFSHSLDMKSGPLPPGGWDDSHLDSAGREGDREALLGDTGTGD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 FLKAPQSFRAELSSILLLLFLYVLQGIPLGLAGSIPLILQSKNVSYTDQAFFSFVFWPFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 FLKAPQSFRAELSSILLLLFLYVLQGIPLGLAGSIPLILQSKNVSYTDQAFFSFVFWPFS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 LKLLWAPLVDAVYVKNFGRRKSWLVPTQYILGLFMIYLSTQVDRLLGNTDDRTPDVIALT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 LKLLWAPLVDAVYVKNFGRRKSWLVPTQYILGLFMIYLSTQVDRLLGNTDDRTPDVIALT 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 VAFFLFEFLAATQDIAVDGWALTMLSRENVGYASTCNSVGQTAGYFLGNVLFLALESADF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 VAFFLFEFLAATQDIAVDGWALTMLSRENVGYASTCNSVGQTAGYFLGNVLFLALESADF 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 CNKYLRFQPQPRGIVTLSDFLFFWGTVFLITTTLVALLKKENEVSVVKEETQGITDTYKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 CNKYLRFQPQPRGIVTLSDFLFFWGTVFLITTTLVALLKKENEVSVVKEETQGITDTYKL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE6 LFAIIKMPAVLTFCLLILTAKIGFSAADAVTGLKLVEEGVPKEHLALLAVPMVPLQIILP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 LFAIIKMPAVLTFCLLILTAKIGFSAADAVTGLKLVEEGVPKEHLALLAVPMVPLQIILP 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE6 LIISKYTAGPQPLNTFYKAMPYRLLLGLEYALLVWWTPKVEHQGGFPIYYYIVVLLSYAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 LIISKYTAGPQPLNTFYKAMPYRLLLGLEYALLVWWTPKVEHQGGFPIYYYIVVLLSYAL 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE6 HQVTVYSMYVSIMAFNAKVSDPLIGGTYMTLLNTVSNLGGNWPSTVALWLVDPLTVKECV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 HQVTVYSMYVSIMAFNAKVSDPLIGGTYMTLLNTVSNLGGNWPSTVALWLVDPLTVKECV 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE6 GASNQNCRTPDAVELCKKLGGSCVTALDGYYVESIICVFIGFGWWFFLGPKFKKLQDEGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 GASNQNCRTPDAVELCKKLGGSCVTALDGYYVESIICVFIGFGWWFFLGPKFKKLQDEGS 490 500 510 520 530 540 pF1KE6 SSWKCKRNN ::::::::: CCDS31 SSWKCKRNN 549 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 13:04:16 2016 done: Tue Nov 8 13:04:16 2016 Total Scan time: 3.100 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]