FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5522, 357 aa 1>>>pF1KE5522 357 - 357 aa - 357 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.8332+/-0.00044; mu= 13.5021+/- 0.027 mean_var=67.9256+/-13.179, 0's: 0 Z-trim(109.7): 37 B-trim: 0 in 0/49 Lambda= 0.155617 statistics sampled from 17970 (17976) to 17970 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.573), E-opt: 0.2 (0.211), width: 16 Scan time: 7.030 The best scores are: opt bits E(85289) NP_004205 (OMIM: 608296,617107) acidic fibroblast ( 357) 2360 539.1 5.4e-153 NP_942600 (OMIM: 608296,617107) acidic fibroblast ( 364) 2336 533.8 2.3e-151 >>NP_004205 (OMIM: 608296,617107) acidic fibroblast grow (357 aa) initn: 2360 init1: 2360 opt: 2360 Z-score: 2867.6 bits: 539.1 E(85289): 5.4e-153 Smith-Waterman score: 2360; 100.0% identity (100.0% similar) in 357 aa overlap (1-357:1-357) 10 20 30 40 50 60 pF1KE5 MTSELDIFVGNTTLIDEDVYRLWLDGYSVTDAVALRVRSGILEQTGATAAVLQSDTMDHY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 MTSELDIFVGNTTLIDEDVYRLWLDGYSVTDAVALRVRSGILEQTGATAAVLQSDTMDHY 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 RTFHMLERLLHAPPKLLHQLIFQIPPSRQALLIERYYAFDEAFVREVLGKKLSKGTKKDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 RTFHMLERLLHAPPKLLHQLIFQIPPSRQALLIERYYAFDEAFVREVLGKKLSKGTKKDL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 DDISTKTGITLKSCRRQFDNFKRVFKVVEEMRGSLVDNIQQHFLLSDRLARDYAAIVFFA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 DDISTKTGITLKSCRRQFDNFKRVFKVVEEMRGSLVDNIQQHFLLSDRLARDYAAIVFFA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 NNRFETGKKKLQYLSFGDFAFCAELMIQNWTLGAVDSQMDDMDMDLDKEFLQDLKELKVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 NNRFETGKKKLQYLSFGDFAFCAELMIQNWTLGAVDSQMDDMDMDLDKEFLQDLKELKVL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 VADKDLLDLHKSLVCTALRGKLGVFSEMEANFKNLSRGLVNVAAKLTHNKDVRDLFVDLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 VADKDLLDLHKSLVCTALRGKLGVFSEMEANFKNLSRGLVNVAAKLTHNKDVRDLFVDLV 250 260 270 280 290 300 310 320 330 340 350 pF1KE5 EKFVEPCRSDHWPLSDVRFFLNQYSASVHSLDGFRHQALWDRYMGTLRGCLLRLYHD ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 EKFVEPCRSDHWPLSDVRFFLNQYSASVHSLDGFRHQALWDRYMGTLRGCLLRLYHD 310 320 330 340 350 >>NP_942600 (OMIM: 608296,617107) acidic fibroblast grow (364 aa) initn: 1436 init1: 1414 opt: 2336 Z-score: 2838.4 bits: 533.8 E(85289): 2.3e-151 Smith-Waterman score: 2336; 98.1% identity (98.1% similar) in 364 aa overlap (1-357:1-364) 10 20 30 40 50 60 pF1KE5 MTSELDIFVGNTTLIDEDVYRLWLDGYSVTDAVALRVRSGILEQTGATAAVLQSDTMDHY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_942 MTSELDIFVGNTTLIDEDVYRLWLDGYSVTDAVALRVRSGILEQTGATAAVLQSDTMDHY 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 RTFHMLERLLHAPPKLLHQLIFQIPPSRQALLIERYYAFDEAFVREVLGKKLSKGTKKDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_942 RTFHMLERLLHAPPKLLHQLIFQIPPSRQALLIERYYAFDEAFVREVLGKKLSKGTKKDL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 DDISTKTGITLKSCRRQFDNFKRVFKVVEEMRGSLVDNIQQHFLLSDRLARDYAAIVFFA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_942 DDISTKTGITLKSCRRQFDNFKRVFKVVEEMRGSLVDNIQQHFLLSDRLARDYAAIVFFA 130 140 150 160 170 180 190 200 210 220 230 pF1KE5 NNRFETGKKKLQYLSFGDFAFCAELMIQNWTLGAV-------DSQMDDMDMDLDKEFLQD ::::::::::::::::::::::::::::::::::: :::::::::::::::::: NP_942 NNRFETGKKKLQYLSFGDFAFCAELMIQNWTLGAVGEAPTDPDSQMDDMDMDLDKEFLQD 190 200 210 220 230 240 240 250 260 270 280 290 pF1KE5 LKELKVLVADKDLLDLHKSLVCTALRGKLGVFSEMEANFKNLSRGLVNVAAKLTHNKDVR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_942 LKELKVLVADKDLLDLHKSLVCTALRGKLGVFSEMEANFKNLSRGLVNVAAKLTHNKDVR 250 260 270 280 290 300 300 310 320 330 340 350 pF1KE5 DLFVDLVEKFVEPCRSDHWPLSDVRFFLNQYSASVHSLDGFRHQALWDRYMGTLRGCLLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_942 DLFVDLVEKFVEPCRSDHWPLSDVRFFLNQYSASVHSLDGFRHQALWDRYMGTLRGCLLR 310 320 330 340 350 360 pF1KE5 LYHD :::: NP_942 LYHD 357 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 01:27:44 2016 done: Tue Nov 8 01:27:45 2016 Total Scan time: 7.030 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]