Result of FASTA (omim) for
pFN21AE0666
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0666, 357 aa
1>>>pF1KE0666 357 - 357 aa - 357 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.0961+/-0.000419; mu= 7.9625+/- 0.027
mean_var=376.6956+/-79.968, 0's: 0 Z-trim(122.6): 27 B-trim: 2051 in 1/53
Lambda= 0.066081
statistics sampled from 41067 (41094) to 41067 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.786), E-opt: 0.2 (0.482), width: 16
Scan time: 9.380
The best scores are: opt bits E(85289)
XP_016876139 (OMIM: 612408) PREDICTED: paraspeckle ( 393) 2391 241.6 2.3e-63
XP_011533444 (OMIM: 612408) PREDICTED: paraspeckle ( 406) 2335 236.2 9.5e-62
XP_011533443 (OMIM: 612408) PREDICTED: paraspeckle ( 409) 2335 236.2 9.5e-62
XP_011533439 (OMIM: 612408) PREDICTED: paraspeckle ( 469) 2336 236.4 9.6e-62
XP_011533442 (OMIM: 612408) PREDICTED: paraspeckle ( 417) 2335 236.3 9.6e-62
XP_011533441 (OMIM: 612408) PREDICTED: paraspeckle ( 417) 2335 236.3 9.6e-62
XP_011533440 (OMIM: 612408) PREDICTED: paraspeckle ( 447) 2335 236.3 1e-61
NP_001035879 (OMIM: 612408) paraspeckle component ( 523) 2336 236.5 1e-61
XP_006719907 (OMIM: 612408) PREDICTED: paraspeckle ( 523) 2336 236.5 1e-61
NP_001138880 (OMIM: 300084,300967) non-POU domain- ( 471) 1655 171.5 3.4e-42
NP_001138881 (OMIM: 300084,300967) non-POU domain- ( 471) 1655 171.5 3.4e-42
NP_031389 (OMIM: 300084,300967) non-POU domain-con ( 471) 1655 171.5 3.4e-42
XP_005271172 (OMIM: 605199) PREDICTED: splicing fa ( 669) 1638 170.1 1.2e-41
XP_011540252 (OMIM: 605199) PREDICTED: splicing fa ( 679) 1638 170.1 1.3e-41
XP_016857542 (OMIM: 605199) PREDICTED: splicing fa ( 707) 1638 170.2 1.3e-41
NP_005057 (OMIM: 605199) splicing factor, proline- ( 707) 1638 170.2 1.3e-41
XP_016857543 (OMIM: 605199) PREDICTED: splicing fa ( 707) 1638 170.2 1.3e-41
XP_005271169 (OMIM: 605199) PREDICTED: splicing fa ( 707) 1638 170.2 1.3e-41
XP_005271170 (OMIM: 605199) PREDICTED: splicing fa ( 707) 1638 170.2 1.3e-41
NP_001138882 (OMIM: 300084,300967) non-POU domain- ( 382) 1427 149.6 1e-35
>>XP_016876139 (OMIM: 612408) PREDICTED: paraspeckle com (393 aa)
initn: 2391 init1: 2391 opt: 2391 Z-score: 1258.6 bits: 241.6 E(85289): 2.3e-63
Smith-Waterman score: 2391; 100.0% identity (100.0% similar) in 357 aa overlap (1-357:37-393)
10 20 30
pF1KE0 MALALAGEPAPPAPAPPEDHPDEEMGFTID
::::::::::::::::::::::::::::::
XP_016 LKQVRIEKNPARLRALESAVGESEPAAAAAMALALAGEPAPPAPAPPEDHPDEEMGFTID
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE0 IKSFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IKSFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLES
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE0 RTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAV
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE0 VVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPE
190 200 210 220 230 240
220 230 240 250 260 270
pF1KE0 KLMQKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KLMQKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEA
250 260 270 280 290 300
280 290 300 310 320 330
pF1KE0 EMEAARHEHQLMLMRQDLMRRQEELRRLEELRNQELQKRKQIQLRHEEEHRRREEEMIRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EMEAARHEHQLMLMRQDLMRRQEELRRLEELRNQELQKRKQIQLRHEEEHRRREEEMIRH
310 320 330 340 350 360
340 350
pF1KE0 REQEELRRQQEGFKPNYMENGDKRKCG
:::::::::::::::::::::::::::
XP_016 REQEELRRQQEGFKPNYMENGDKRKCG
370 380 390
>>XP_011533444 (OMIM: 612408) PREDICTED: paraspeckle com (406 aa)
initn: 2335 init1: 2335 opt: 2335 Z-score: 1229.6 bits: 236.2 E(85289): 9.5e-62
Smith-Waterman score: 2335; 100.0% identity (100.0% similar) in 350 aa overlap (1-350:37-386)
10 20 30
pF1KE0 MALALAGEPAPPAPAPPEDHPDEEMGFTID
::::::::::::::::::::::::::::::
XP_011 LKQVRIEKNPARLRALESAVGESEPAAAAAMALALAGEPAPPAPAPPEDHPDEEMGFTID
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE0 IKSFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IKSFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLES
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE0 RTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAV
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE0 VVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPE
190 200 210 220 230 240
220 230 240 250 260 270
pF1KE0 KLMQKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KLMQKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEA
250 260 270 280 290 300
280 290 300 310 320 330
pF1KE0 EMEAARHEHQLMLMRQDLMRRQEELRRLEELRNQELQKRKQIQLRHEEEHRRREEEMIRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EMEAARHEHQLMLMRQDLMRRQEELRRLEELRNQELQKRKQIQLRHEEEHRRREEEMIRH
310 320 330 340 350 360
340 350
pF1KE0 REQEELRRQQEGFKPNYMENGDKRKCG
::::::::::::::::::::
XP_011 REQEELRRQQEGFKPNYMENRWGLDMLPRLGSSSPLSSSS
370 380 390 400
>>XP_011533443 (OMIM: 612408) PREDICTED: paraspeckle com (409 aa)
initn: 2335 init1: 2335 opt: 2335 Z-score: 1229.6 bits: 236.2 E(85289): 9.5e-62
Smith-Waterman score: 2335; 100.0% identity (100.0% similar) in 350 aa overlap (1-350:37-386)
10 20 30
pF1KE0 MALALAGEPAPPAPAPPEDHPDEEMGFTID
::::::::::::::::::::::::::::::
XP_011 LKQVRIEKNPARLRALESAVGESEPAAAAAMALALAGEPAPPAPAPPEDHPDEEMGFTID
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE0 IKSFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IKSFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLES
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE0 RTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAV
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE0 VVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPE
190 200 210 220 230 240
220 230 240 250 260 270
pF1KE0 KLMQKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KLMQKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEA
250 260 270 280 290 300
280 290 300 310 320 330
pF1KE0 EMEAARHEHQLMLMRQDLMRRQEELRRLEELRNQELQKRKQIQLRHEEEHRRREEEMIRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EMEAARHEHQLMLMRQDLMRRQEELRRLEELRNQELQKRKQIQLRHEEEHRRREEEMIRH
310 320 330 340 350 360
340 350
pF1KE0 REQEELRRQQEGFKPNYMENGDKRKCG
::::::::::::::::::::
XP_011 REQEELRRQQEGFKPNYMENFKGRNQMVSVQLVQVMSKVDFLC
370 380 390 400
>>XP_011533439 (OMIM: 612408) PREDICTED: paraspeckle com (469 aa)
initn: 2490 init1: 2336 opt: 2336 Z-score: 1229.5 bits: 236.4 E(85289): 9.6e-62
Smith-Waterman score: 2336; 99.2% identity (99.7% similar) in 353 aa overlap (1-353:37-389)
10 20 30
pF1KE0 MALALAGEPAPPAPAPPEDHPDEEMGFTID
::::::::::::::::::::::::::::::
XP_011 LKQVRIEKNPARLRALESAVGESEPAAAAAMALALAGEPAPPAPAPPEDHPDEEMGFTID
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE0 IKSFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IKSFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLES
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE0 RTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAV
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE0 VVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPE
190 200 210 220 230 240
220 230 240 250 260 270
pF1KE0 KLMQKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KLMQKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEA
250 260 270 280 290 300
280 290 300 310 320 330
pF1KE0 EMEAARHEHQLMLMRQDLMRRQEELRRLEELRNQELQKRKQIQLRHEEEHRRREEEMIRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EMEAARHEHQLMLMRQDLMRRQEELRRLEELRNQELQKRKQIQLRHEEEHRRREEEMIRH
310 320 330 340 350 360
340 350
pF1KE0 REQEELRRQQEGFKPNYMENGDKRKCG
:::::::::::::::::::: ..
XP_011 REQEELRRQQEGFKPNYMENREQEMRMGDMGPRGAINMGDAFSPAPAGNQGPPPMMGMNM
370 380 390 400 410 420
>>XP_011533442 (OMIM: 612408) PREDICTED: paraspeckle com (417 aa)
initn: 2335 init1: 2335 opt: 2335 Z-score: 1229.5 bits: 236.3 E(85289): 9.6e-62
Smith-Waterman score: 2335; 100.0% identity (100.0% similar) in 350 aa overlap (1-350:37-386)
10 20 30
pF1KE0 MALALAGEPAPPAPAPPEDHPDEEMGFTID
::::::::::::::::::::::::::::::
XP_011 LKQVRIEKNPARLRALESAVGESEPAAAAAMALALAGEPAPPAPAPPEDHPDEEMGFTID
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE0 IKSFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IKSFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLES
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE0 RTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAV
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE0 VVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPE
190 200 210 220 230 240
220 230 240 250 260 270
pF1KE0 KLMQKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KLMQKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEA
250 260 270 280 290 300
280 290 300 310 320 330
pF1KE0 EMEAARHEHQLMLMRQDLMRRQEELRRLEELRNQELQKRKQIQLRHEEEHRRREEEMIRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EMEAARHEHQLMLMRQDLMRRQEELRRLEELRNQELQKRKQIQLRHEEEHRRREEEMIRH
310 320 330 340 350 360
340 350
pF1KE0 REQEELRRQQEGFKPNYMENGDKRKCG
::::::::::::::::::::
XP_011 REQEELRRQQEGFKPNYMENVYLMSFHLKWVIKENVAEVTRSSACSVIQKS
370 380 390 400 410
>>XP_011533441 (OMIM: 612408) PREDICTED: paraspeckle com (417 aa)
initn: 2335 init1: 2335 opt: 2335 Z-score: 1229.5 bits: 236.3 E(85289): 9.6e-62
Smith-Waterman score: 2335; 100.0% identity (100.0% similar) in 350 aa overlap (1-350:37-386)
10 20 30
pF1KE0 MALALAGEPAPPAPAPPEDHPDEEMGFTID
::::::::::::::::::::::::::::::
XP_011 LKQVRIEKNPARLRALESAVGESEPAAAAAMALALAGEPAPPAPAPPEDHPDEEMGFTID
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE0 IKSFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IKSFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLES
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE0 RTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAV
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE0 VVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPE
190 200 210 220 230 240
220 230 240 250 260 270
pF1KE0 KLMQKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KLMQKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEA
250 260 270 280 290 300
280 290 300 310 320 330
pF1KE0 EMEAARHEHQLMLMRQDLMRRQEELRRLEELRNQELQKRKQIQLRHEEEHRRREEEMIRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EMEAARHEHQLMLMRQDLMRRQEELRRLEELRNQELQKRKQIQLRHEEEHRRREEEMIRH
310 320 330 340 350 360
340 350
pF1KE0 REQEELRRQQEGFKPNYMENGDKRKCG
::::::::::::::::::::
XP_011 REQEELRRQQEGFKPNYMENVYLMSFHLKWVIKENVAEVTRSSACSVIQKS
370 380 390 400 410
>>XP_011533440 (OMIM: 612408) PREDICTED: paraspeckle com (447 aa)
initn: 2335 init1: 2335 opt: 2335 Z-score: 1229.2 bits: 236.3 E(85289): 1e-61
Smith-Waterman score: 2335; 100.0% identity (100.0% similar) in 350 aa overlap (1-350:37-386)
10 20 30
pF1KE0 MALALAGEPAPPAPAPPEDHPDEEMGFTID
::::::::::::::::::::::::::::::
XP_011 LKQVRIEKNPARLRALESAVGESEPAAAAAMALALAGEPAPPAPAPPEDHPDEEMGFTID
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE0 IKSFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IKSFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLES
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE0 RTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAV
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE0 VVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPE
190 200 210 220 230 240
220 230 240 250 260 270
pF1KE0 KLMQKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KLMQKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEA
250 260 270 280 290 300
280 290 300 310 320 330
pF1KE0 EMEAARHEHQLMLMRQDLMRRQEELRRLEELRNQELQKRKQIQLRHEEEHRRREEEMIRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EMEAARHEHQLMLMRQDLMRRQEELRRLEELRNQELQKRKQIQLRHEEEHRRREEEMIRH
310 320 330 340 350 360
340 350
pF1KE0 REQEELRRQQEGFKPNYMENGDKRKCG
::::::::::::::::::::
XP_011 REQEELRRQQEGFKPNYMENYVCHFLITGYTSNSEVVFPSEEFMPNGAAEERILTEVGHQ
370 380 390 400 410 420
>>NP_001035879 (OMIM: 612408) paraspeckle component 1 [H (523 aa)
initn: 2478 init1: 2336 opt: 2336 Z-score: 1229.1 bits: 236.5 E(85289): 1e-61
Smith-Waterman score: 2336; 99.2% identity (99.7% similar) in 353 aa overlap (1-353:37-389)
10 20 30
pF1KE0 MALALAGEPAPPAPAPPEDHPDEEMGFTID
::::::::::::::::::::::::::::::
NP_001 LKQVRIEKNPARLRALESAVGESEPAAAAAMALALAGEPAPPAPAPPEDHPDEEMGFTID
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE0 IKSFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IKSFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLES
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE0 RTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAV
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE0 VVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPE
190 200 210 220 230 240
220 230 240 250 260 270
pF1KE0 KLMQKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KLMQKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEA
250 260 270 280 290 300
280 290 300 310 320 330
pF1KE0 EMEAARHEHQLMLMRQDLMRRQEELRRLEELRNQELQKRKQIQLRHEEEHRRREEEMIRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EMEAARHEHQLMLMRQDLMRRQEELRRLEELRNQELQKRKQIQLRHEEEHRRREEEMIRH
310 320 330 340 350 360
340 350
pF1KE0 REQEELRRQQEGFKPNYMENGDKRKCG
:::::::::::::::::::: ..
NP_001 REQEELRRQQEGFKPNYMENREQEMRMGDMGPRGAINMGDAFSPAPAGNQGPPPMMGMNM
370 380 390 400 410 420
>>XP_006719907 (OMIM: 612408) PREDICTED: paraspeckle com (523 aa)
initn: 2478 init1: 2336 opt: 2336 Z-score: 1229.1 bits: 236.5 E(85289): 1e-61
Smith-Waterman score: 2336; 99.2% identity (99.7% similar) in 353 aa overlap (1-353:37-389)
10 20 30
pF1KE0 MALALAGEPAPPAPAPPEDHPDEEMGFTID
::::::::::::::::::::::::::::::
XP_006 LKQVRIEKNPARLRALESAVGESEPAAAAAMALALAGEPAPPAPAPPEDHPDEEMGFTID
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE0 IKSFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 IKSFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLES
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE0 RTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAV
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE0 VVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPE
190 200 210 220 230 240
220 230 240 250 260 270
pF1KE0 KLMQKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KLMQKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEA
250 260 270 280 290 300
280 290 300 310 320 330
pF1KE0 EMEAARHEHQLMLMRQDLMRRQEELRRLEELRNQELQKRKQIQLRHEEEHRRREEEMIRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EMEAARHEHQLMLMRQDLMRRQEELRRLEELRNQELQKRKQIQLRHEEEHRRREEEMIRH
310 320 330 340 350 360
340 350
pF1KE0 REQEELRRQQEGFKPNYMENGDKRKCG
:::::::::::::::::::: ..
XP_006 REQEELRRQQEGFKPNYMENREQEMRMGDMGPRGAINMGDAFSPAPAGNQGPPPMMGMNM
370 380 390 400 410 420
>>NP_001138880 (OMIM: 300084,300967) non-POU domain-cont (471 aa)
initn: 1971 init1: 1594 opt: 1655 Z-score: 878.6 bits: 171.5 E(85289): 3.4e-42
Smith-Waterman score: 1655; 71.1% identity (90.9% similar) in 339 aa overlap (9-347:37-374)
10 20 30
pF1KE0 MALALAGEPAPPAPAPPEDHPDEEMGFTIDIKSFLKPG
: :: :: .. ... :.:::.:.: :::
NP_001 FNLEKQNHTPRKHHQHHHQQQHHQQQQQQPPPPPIPANGQQASSQNEGLTIDLKNFRKPG
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE0 EKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAK
:::.::: :::::::: :::::....:::.::. .::::..:.::::::::.::::::::
NP_001 EKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAK
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE0 AELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGR
.:::. :... ::.::: :.:.:::.:: :::::::.::: :: ::.:::.::::::
NP_001 VELDNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGR
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE0 ATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLMQKTQQ
.:::.:::..:: :::::.::..:.::::: :::: ::::.:.:::.::::::. :.::
NP_001 PSGKGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQQ
190 200 210 220 230 240
220 230 240 250 260 270
pF1KE0 YHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEAEMEAARHE
.::::::::::::::.::.::: ::::: ::::::..::::::.::.:::: ::::::::
NP_001 FHKEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQVDRNIKEAREKLEMEMEAARHE
250 260 270 280 290 300
280 290 300 310 320 330
pF1KE0 HQLMLMRQDLMRRQEELRRLEELRNQELQKRKQIQLRHEEEHRRREEEMIRHREQEELRR
::.::::::::::::::::.:::.:::.:::::..::.:::.::::::: :....: .::
NP_001 HQVMLMRQDLMRRQEELRRMEELHNQEVQKRKQLELRQEEERRRREEEM-RRQQEEMMRR
310 320 330 340 350 360
340 350
pF1KE0 QQEGFKPNYMENGDKRKCG
:::::: ..
NP_001 QQEGFKGTFPDAREQEIRMGQMAMGGAMGINNRGAMPPAPVPAGTPAPPGPATMMPDGTL
370 380 390 400 410 420
357 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 13:29:21 2016 done: Sat Nov 5 13:29:22 2016
Total Scan time: 9.380 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]