FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6410, 468 aa
  1>>>pF1KE6410 468 - 468 aa - 468 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5999+/-0.000949; mu= 15.8338+/- 0.057
 mean_var=62.8058+/-12.858, 0's: 0 Z-trim(104.1): 16  B-trim: 28 in 1/47
 Lambda= 0.161836
 statistics sampled from 7716 (7721) to 7716 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.607), E-opt: 0.2 (0.237), width:  16
 Scan time:  3.050

The best scores are:                                      opt bits E(32554)
CCDS9823.1 COQ6 gene_id:51004|Hs108|chr14          ( 468) 3091 730.6 8.3e-211
CCDS9824.2 COQ6 gene_id:51004|Hs108|chr14          ( 443) 2726 645.4 3.6e-185


>>CCDS9823.1 COQ6 gene_id:51004|Hs108|chr14               (468 aa)
 initn: 3091 init1: 3091 opt: 3091  Z-score: 3898.1  bits: 730.6 E(32554): 8.3e-211
Smith-Waterman score: 3091; 100.0% identity (100.0% similar) in 468 aa overlap (1-468:1-468)

               10        20        30        40        50        60
pF1KE6 MAARLVSRCGAVRAAPHSGPLVSWRRWSGASTDTVYDVVVSGGGLVGAAMACALGYDIHF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 MAARLVSRCGAVRAAPHSGPLVSWRRWSGASTDTVYDVVVSGGGLVGAAMACALGYDIHF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 HDKKILLLEAGPKKVLEKLSETYSNRVSSISPGSATLLSSFGAWDHICNMRYRAFRRMQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 HDKKILLLEAGPKKVLEKLSETYSNRVSSISPGSATLLSSFGAWDHICNMRYRAFRRMQV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 WDACSEALIMFDKDNLDDMGYIVENDVIMHALTKQLEAVSDRVTVLYRSKAIRYTWPCPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 WDACSEALIMFDKDNLDDMGYIVENDVIMHALTKQLEAVSDRVTVLYRSKAIRYTWPCPF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 PMADSSPWVHITLGDGSTFQTKLLIGADGHNSGVRQAVGIQNVSWNYDQSAVVATLHLSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 PMADSSPWVHITLGDGSTFQTKLLIGADGHNSGVRQAVGIQNVSWNYDQSAVVATLHLSE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 ATENNVAWQRFLPSGPIALLPLSDTLSSLVWSTSHEHAAELVSMDEEKFVDAVNSAFWSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 ATENNVAWQRFLPSGPIALLPLSDTLSSLVWSTSHEHAAELVSMDEEKFVDAVNSAFWSD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE6 ADHTDFIDTAGAMLQYAVSLLKPTKVSARQLPPSVARVDAKSRVLFPLGLGHAAEYVRPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 ADHTDFIDTAGAMLQYAVSLLKPTKVSARQLPPSVARVDAKSRVLFPLGLGHAAEYVRPR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE6 VALIGDAAHRVHPLAGQGVNMGFGDISSLAHHLSTAAFNGKDLGSVSHLTGYETERQRHN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 VALIGDAAHRVHPLAGQGVNMGFGDISSLAHHLSTAAFNGKDLGSVSHLTGYETERQRHN
              370       380       390       400       410       420

              430       440       450       460        
pF1KE6 TALLAATDLLKRLYSTSASPLVLLRTWGLQATNAVSPLKEQIMAFASK
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 TALLAATDLLKRLYSTSASPLVLLRTWGLQATNAVSPLKEQIMAFASK
              430       440       450       460        

>>CCDS9824.2 COQ6 gene_id:51004|Hs108|chr14               (443 aa)
 initn: 2726 init1: 2726 opt: 2726  Z-score: 3437.9  bits: 645.4 E(32554): 3.6e-185
Smith-Waterman score: 2726; 100.0% identity (100.0% similar) in 414 aa overlap (55-468:30-443)

           30        40        50        60        70        80    
pF1KE6 RRWSGASTDTVYDVVVSGGGLVGAAMACALGYDIHFHDKKILLLEAGPKKVLEKLSETYS
                                     ::::::::::::::::::::::::::::::
CCDS98  MRGQGPPLSSFGVWLASRAASDPSRPRRQGYDIHFHDKKILLLEAGPKKVLEKLSETYS
                10        20        30        40        50         

           90       100       110       120       130       140    
pF1KE6 NRVSSISPGSATLLSSFGAWDHICNMRYRAFRRMQVWDACSEALIMFDKDNLDDMGYIVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 NRVSSISPGSATLLSSFGAWDHICNMRYRAFRRMQVWDACSEALIMFDKDNLDDMGYIVE
      60        70        80        90       100       110         

          150       160       170       180       190       200    
pF1KE6 NDVIMHALTKQLEAVSDRVTVLYRSKAIRYTWPCPFPMADSSPWVHITLGDGSTFQTKLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 NDVIMHALTKQLEAVSDRVTVLYRSKAIRYTWPCPFPMADSSPWVHITLGDGSTFQTKLL
     120       130       140       150       160       170         

          210       220       230       240       250       260    
pF1KE6 IGADGHNSGVRQAVGIQNVSWNYDQSAVVATLHLSEATENNVAWQRFLPSGPIALLPLSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 IGADGHNSGVRQAVGIQNVSWNYDQSAVVATLHLSEATENNVAWQRFLPSGPIALLPLSD
     180       190       200       210       220       230         

          270       280       290       300       310       320    
pF1KE6 TLSSLVWSTSHEHAAELVSMDEEKFVDAVNSAFWSDADHTDFIDTAGAMLQYAVSLLKPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 TLSSLVWSTSHEHAAELVSMDEEKFVDAVNSAFWSDADHTDFIDTAGAMLQYAVSLLKPT
     240       250       260       270       280       290         

          330       340       350       360       370       380    
pF1KE6 KVSARQLPPSVARVDAKSRVLFPLGLGHAAEYVRPRVALIGDAAHRVHPLAGQGVNMGFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 KVSARQLPPSVARVDAKSRVLFPLGLGHAAEYVRPRVALIGDAAHRVHPLAGQGVNMGFG
     300       310       320       330       340       350         

          390       400       410       420       430       440    
pF1KE6 DISSLAHHLSTAAFNGKDLGSVSHLTGYETERQRHNTALLAATDLLKRLYSTSASPLVLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 DISSLAHHLSTAAFNGKDLGSVSHLTGYETERQRHNTALLAATDLLKRLYSTSASPLVLL
     360       370       380       390       400       410         

          450       460        
pF1KE6 RTWGLQATNAVSPLKEQIMAFASK
       ::::::::::::::::::::::::
CCDS98 RTWGLQATNAVSPLKEQIMAFASK
     420       430       440   




468 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 13:00:31 2016 done: Tue Nov  8 13:00:31 2016
 Total Scan time:  3.050 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]