FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4575, 758 aa 1>>>pF1KE4575 758 - 758 aa - 758 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.0985+/-0.000868; mu= 16.3534+/- 0.052 mean_var=77.6847+/-15.431, 0's: 0 Z-trim(107.8): 16 B-trim: 54 in 2/49 Lambda= 0.145515 statistics sampled from 9801 (9807) to 9801 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.669), E-opt: 0.2 (0.301), width: 16 Scan time: 3.040 The best scores are: opt bits E(32554) CCDS1978.1 GGCX gene_id:2677|Hs108|chr2 ( 758) 5169 1094.9 0 CCDS46353.1 GGCX gene_id:2677|Hs108|chr2 ( 701) 4707 997.9 0 >>CCDS1978.1 GGCX gene_id:2677|Hs108|chr2 (758 aa) initn: 5169 init1: 5169 opt: 5169 Z-score: 5859.5 bits: 1094.9 E(32554): 0 Smith-Waterman score: 5169; 100.0% identity (100.0% similar) in 758 aa overlap (1-758:1-758) 10 20 30 40 50 60 pF1KE4 MAVSAGSARTSPSSDKVQKDKAELISGPRQDSRIGKLLGFEWTDLSSWRRLVTLLNRPTD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS19 MAVSAGSARTSPSSDKVQKDKAELISGPRQDSRIGKLLGFEWTDLSSWRRLVTLLNRPTD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 PASLAVFRFLFGFLMVLDIPQERGLSSLDRKYLDGLDVCRFPLLDALRPLPLDWMYLVYT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS19 PASLAVFRFLFGFLMVLDIPQERGLSSLDRKYLDGLDVCRFPLLDALRPLPLDWMYLVYT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 IMFLGALGMMLGLCYRISCVLFLLPYWYVFLLDKTSWNNHSYLYGLLAFQLTFMDANHYW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS19 IMFLGALGMMLGLCYRISCVLFLLPYWYVFLLDKTSWNNHSYLYGLLAFQLTFMDANHYW 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 SVDGLLNAHRRNAHVPLWNYAVLRGQIFIVYFIAGVKKLDADWVEGYSMEYLSRHWLFSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS19 SVDGLLNAHRRNAHVPLWNYAVLRGQIFIVYFIAGVKKLDADWVEGYSMEYLSRHWLFSP 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 FKLLLSEELTSLLVVHWGGLLLDLSAGFLLFFDVSRSIGLFFVSYFHCMNSQLFSIGMFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS19 FKLLLSEELTSLLVVHWGGLLLDLSAGFLLFFDVSRSIGLFFVSYFHCMNSQLFSIGMFS 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE4 YVMLASSPLFCSPEWPRKLVSYCPRRLQQLLPLKAAPQPSVSCVYKRSRGKSGQKPGLRH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS19 YVMLASSPLFCSPEWPRKLVSYCPRRLQQLLPLKAAPQPSVSCVYKRSRGKSGQKPGLRH 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE4 QLGAAFTLLYLLEQLFLPYSHFLTQGYNNWTNGLYGYSWDMMVHSRSHQHVKITYRDGRT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS19 QLGAAFTLLYLLEQLFLPYSHFLTQGYNNWTNGLYGYSWDMMVHSRSHQHVKITYRDGRT 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE4 GELGYLNPGVFTQSRRWKDHADMLKQYATCLSRLLPKYNVTEPQIYFDIWVSINDRFQQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS19 GELGYLNPGVFTQSRRWKDHADMLKQYATCLSRLLPKYNVTEPQIYFDIWVSINDRFQQR 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE4 IFDPRVDIVQAAWSPFQRTSWVQPLLMDLSPWRAKLQEIKSSLDNHTEVVFIADFPGLHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS19 IFDPRVDIVQAAWSPFQRTSWVQPLLMDLSPWRAKLQEIKSSLDNHTEVVFIADFPGLHL 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE4 ENFVSEDLGNTSIQLLQGEVTVELVAEQKNQTLREGEKMQLPAGEYHKVYTTSPSPSCYM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS19 ENFVSEDLGNTSIQLLQGEVTVELVAEQKNQTLREGEKMQLPAGEYHKVYTTSPSPSCYM 550 560 570 580 590 600 610 620 630 640 650 660 pF1KE4 YVYVNTTELALEQDLAYLQELKEKVENGSETGPLPPELQPLLEGEVKGGPEPTPLVQTFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS19 YVYVNTTELALEQDLAYLQELKEKVENGSETGPLPPELQPLLEGEVKGGPEPTPLVQTFL 610 620 630 640 650 660 670 680 690 700 710 720 pF1KE4 RRQQRLQEIERRRNTPFHERFFRFLLRKLYVFRRSFLMTCISLRNLILGRPSLEQLAQEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS19 RRQQRLQEIERRRNTPFHERFFRFLLRKLYVFRRSFLMTCISLRNLILGRPSLEQLAQEV 670 680 690 700 710 720 730 740 750 pF1KE4 TYANLRPFEAVGELNPSNTDSSHSNPPESNPDPVHSEF :::::::::::::::::::::::::::::::::::::: CCDS19 TYANLRPFEAVGELNPSNTDSSHSNPPESNPDPVHSEF 730 740 750 >>CCDS46353.1 GGCX gene_id:2677|Hs108|chr2 (701 aa) initn: 4775 init1: 4707 opt: 4707 Z-score: 5335.9 bits: 997.9 E(32554): 0 Smith-Waterman score: 4707; 100.0% identity (100.0% similar) in 687 aa overlap (72-758:15-701) 50 60 70 80 90 100 pF1KE4 WTDLSSWRRLVTLLNRPTDPASLAVFRFLFGFLMVLDIPQERGLSSLDRKYLDGLDVCRF :::::::::::::::::::::::::::::: CCDS46 MAVSAGSARTSPSSGFLMVLDIPQERGLSSLDRKYLDGLDVCRF 10 20 30 40 110 120 130 140 150 160 pF1KE4 PLLDALRPLPLDWMYLVYTIMFLGALGMMLGLCYRISCVLFLLPYWYVFLLDKTSWNNHS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 PLLDALRPLPLDWMYLVYTIMFLGALGMMLGLCYRISCVLFLLPYWYVFLLDKTSWNNHS 50 60 70 80 90 100 170 180 190 200 210 220 pF1KE4 YLYGLLAFQLTFMDANHYWSVDGLLNAHRRNAHVPLWNYAVLRGQIFIVYFIAGVKKLDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 YLYGLLAFQLTFMDANHYWSVDGLLNAHRRNAHVPLWNYAVLRGQIFIVYFIAGVKKLDA 110 120 130 140 150 160 230 240 250 260 270 280 pF1KE4 DWVEGYSMEYLSRHWLFSPFKLLLSEELTSLLVVHWGGLLLDLSAGFLLFFDVSRSIGLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 DWVEGYSMEYLSRHWLFSPFKLLLSEELTSLLVVHWGGLLLDLSAGFLLFFDVSRSIGLF 170 180 190 200 210 220 290 300 310 320 330 340 pF1KE4 FVSYFHCMNSQLFSIGMFSYVMLASSPLFCSPEWPRKLVSYCPRRLQQLLPLKAAPQPSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 FVSYFHCMNSQLFSIGMFSYVMLASSPLFCSPEWPRKLVSYCPRRLQQLLPLKAAPQPSV 230 240 250 260 270 280 350 360 370 380 390 400 pF1KE4 SCVYKRSRGKSGQKPGLRHQLGAAFTLLYLLEQLFLPYSHFLTQGYNNWTNGLYGYSWDM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 SCVYKRSRGKSGQKPGLRHQLGAAFTLLYLLEQLFLPYSHFLTQGYNNWTNGLYGYSWDM 290 300 310 320 330 340 410 420 430 440 450 460 pF1KE4 MVHSRSHQHVKITYRDGRTGELGYLNPGVFTQSRRWKDHADMLKQYATCLSRLLPKYNVT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 MVHSRSHQHVKITYRDGRTGELGYLNPGVFTQSRRWKDHADMLKQYATCLSRLLPKYNVT 350 360 370 380 390 400 470 480 490 500 510 520 pF1KE4 EPQIYFDIWVSINDRFQQRIFDPRVDIVQAAWSPFQRTSWVQPLLMDLSPWRAKLQEIKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 EPQIYFDIWVSINDRFQQRIFDPRVDIVQAAWSPFQRTSWVQPLLMDLSPWRAKLQEIKS 410 420 430 440 450 460 530 540 550 560 570 580 pF1KE4 SLDNHTEVVFIADFPGLHLENFVSEDLGNTSIQLLQGEVTVELVAEQKNQTLREGEKMQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 SLDNHTEVVFIADFPGLHLENFVSEDLGNTSIQLLQGEVTVELVAEQKNQTLREGEKMQL 470 480 490 500 510 520 590 600 610 620 630 640 pF1KE4 PAGEYHKVYTTSPSPSCYMYVYVNTTELALEQDLAYLQELKEKVENGSETGPLPPELQPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 PAGEYHKVYTTSPSPSCYMYVYVNTTELALEQDLAYLQELKEKVENGSETGPLPPELQPL 530 540 550 560 570 580 650 660 670 680 690 700 pF1KE4 LEGEVKGGPEPTPLVQTFLRRQQRLQEIERRRNTPFHERFFRFLLRKLYVFRRSFLMTCI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 LEGEVKGGPEPTPLVQTFLRRQQRLQEIERRRNTPFHERFFRFLLRKLYVFRRSFLMTCI 590 600 610 620 630 640 710 720 730 740 750 pF1KE4 SLRNLILGRPSLEQLAQEVTYANLRPFEAVGELNPSNTDSSHSNPPESNPDPVHSEF ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 SLRNLILGRPSLEQLAQEVTYANLRPFEAVGELNPSNTDSSHSNPPESNPDPVHSEF 650 660 670 680 690 700 758 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 17:10:42 2016 done: Mon Nov 7 17:10:42 2016 Total Scan time: 3.040 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]