FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1430, 282 aa 1>>>pF1KE1430 282 - 282 aa - 282 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.5225+/-0.000311; mu= 15.3588+/- 0.019 mean_var=80.9122+/-16.099, 0's: 0 Z-trim(118.5): 9 B-trim: 470 in 1/50 Lambda= 0.142583 statistics sampled from 31506 (31515) to 31506 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.737), E-opt: 0.2 (0.37), width: 16 Scan time: 6.980 The best scores are: opt bits E(85289) NP_001203 (OMIM: 601269) complement component 1 Q ( 282) 1896 399.0 5.3e-111 >>NP_001203 (OMIM: 601269) complement component 1 Q subc (282 aa) initn: 1896 init1: 1896 opt: 1896 Z-score: 2113.9 bits: 399.0 E(85289): 5.3e-111 Smith-Waterman score: 1896; 100.0% identity (100.0% similar) in 282 aa overlap (1-282:1-282) 10 20 30 40 50 60 pF1KE1 MLPLLRCVPRVLGSSVAGLRAAAPASPFRQLLQPAPRLCTRPFGLLSVRAGSERRPGLLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MLPLLRCVPRVLGSSVAGLRAAAPASPFRQLLQPAPRLCTRPFGLLSVRAGSERRPGLLR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 PRGPCACGCGCGSLHTDGDKAFVDFLSDEIKEERKIQKHKTLPKMSGGWELELNGTEAKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PRGPCACGCGCGSLHTDGDKAFVDFLSDEIKEERKIQKHKTLPKMSGGWELELNGTEAKL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 VRKVAGEKITVTFNINNSIPPTFDGEEEPSQGQKVEEQEPELTSTPNFVVEVIKNDDGKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VRKVAGEKITVTFNINNSIPPTFDGEEEPSQGQKVEEQEPELTSTPNFVVEVIKNDDGKK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 ALVLDCHYPEDEVGQEDEAESDIFSIREVSFQSTGESEWKDTNYTLNTDSLDWALYDHLM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ALVLDCHYPEDEVGQEDEAESDIFSIREVSFQSTGESEWKDTNYTLNTDSLDWALYDHLM 190 200 210 220 230 240 250 260 270 280 pF1KE1 DFLADRGVDNTFADELVELSTALEHQEYITFLEDLKSFVKSQ :::::::::::::::::::::::::::::::::::::::::: NP_001 DFLADRGVDNTFADELVELSTALEHQEYITFLEDLKSFVKSQ 250 260 270 280 282 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 01:30:16 2016 done: Mon Nov 7 01:30:17 2016 Total Scan time: 6.980 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]