FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1700, 246 aa 1>>>pF1KE1700 246 - 246 aa - 246 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1995+/-0.000336; mu= 15.6114+/- 0.021 mean_var=69.7009+/-13.906, 0's: 0 Z-trim(116.1): 13 B-trim: 674 in 1/51 Lambda= 0.153623 statistics sampled from 27022 (27035) to 27022 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.707), E-opt: 0.2 (0.317), width: 16 Scan time: 6.140 The best scores are: opt bits E(85289) NP_071430 (OMIM: 609350) receptor-transporting pro ( 246) 1700 385.3 5.2e-107 NP_113628 (OMIM: 607181) receptor-transporting pro ( 232) 579 136.9 3e-32 XP_016861791 (OMIM: 609138) PREDICTED: receptor-tr ( 225) 319 79.2 6.6e-15 NP_001004312 (OMIM: 609138) receptor-transporting ( 225) 319 79.2 6.6e-15 XP_016861790 (OMIM: 609138) PREDICTED: receptor-tr ( 225) 319 79.2 6.6e-15 NP_714919 (OMIM: 609137) receptor-transporting pro ( 263) 315 78.4 1.4e-14 >>NP_071430 (OMIM: 609350) receptor-transporting protein (246 aa) initn: 1700 init1: 1700 opt: 1700 Z-score: 2042.2 bits: 385.3 E(85289): 5.2e-107 Smith-Waterman score: 1700; 98.8% identity (98.8% similar) in 246 aa overlap (1-246:1-246) 10 20 30 40 50 60 pF1KE1 MVVDFWTWEQTFQELIQEAKPRATWTLKLDGNLQLDCLAQGWKQYQQRAFGWFRCSSCQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_071 MVVDFWTWEQTFQELIQEAKPRATWTLKLDGNLQLDCLAQGWKQYQQRAFGWFRCSSCQR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 SWASAQVQILCHTYWEHWTSQGQVRMRLFGQRCQKCSWSQYEMPEFSSDSTMRILSNLVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_071 SWASAQVQILCHTYWEHWTSQGQVRMRLFGQRCQKCSWSQYEMPEFSSDSTMRILSNLVQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 HILKKYYGNGMRKSPEMPVILEVSLEGSHDTANCEACTLGICGQGLKSYMTKPSKSLLPH :::::::::: ::::::::::::::::::::::::::::::::::::: ::::::::::: NP_071 HILKKYYGNGTRKSPEMPVILEVSLEGSHDTANCEACTLGICGQGLKSCMTKPSKSLLPH 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 LKTGNSSPGIGAVYLANQAKNQSDEAKEAKGSGYEKLGPSRDPDPLNICVFILLLVFIVV ::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::: NP_071 LKTGNSSPGIGAVYLANQAKNQSAEAKEAKGSGYEKLGPSRDPDPLNICVFILLLVFIVV 190 200 210 220 230 240 pF1KE1 KCFTSE :::::: NP_071 KCFTSE >>NP_113628 (OMIM: 607181) receptor-transporting protein (232 aa) initn: 604 init1: 551 opt: 579 Z-score: 699.9 bits: 136.9 E(85289): 3e-32 Smith-Waterman score: 584; 39.4% identity (64.3% similar) in 241 aa overlap (1-241:1-229) 10 20 30 40 50 60 pF1KE1 MVVDFWTWEQTFQELIQEAKPRATWTLKLDGNLQLDCLAQGWKQYQQRAFGWFRCSSCQR :. : .:.: ::::..:.:: :::. : .: . : :: :::: .:. :.::::.: NP_113 MAGDTEVWKQMFQELMREVKPWHRWTLRPDKGLLPNVLKPGWMQYQQWTFARFQCSSCSR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 SWASAQVQILCHTYWEHWTSQGQVRMRLFGQRCQKCSWSQYEMPEFSSDSTMRILSNLVQ .:::::: .: : : . :.:::.::.: :::.:: .: :::.... :::.::: NP_113 NWASAQVLVLFHMNWSEEKSRGQVKMRVFTQRCKKCPQPLFEDPEFTQENISRILKNLVF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 HILKKYYGNGMRKSPEMPVILEVSLEGSHDTANCEACTLGICGQGLKSYMTKPSKSLLPH .:::: : . .. :.:.: ..:::: :.. ::::: :.:. .. ::.. NP_113 RILKKCYRGRFQLIEEVPMIKDISLEGPHNSDNCEACLQGFCAGPIQVTSLPPSQT---- 130 140 150 160 170 190 200 210 220 230 240 pF1KE1 LKTGNSSPGIGAVYLANQAKNQSDEAKEAKGSGYEKLGPSRDPDPLNICVFILLLVFIVV : . ..: .... . . : : . :. . . ::.....: ::: NP_113 -------PRVHSIYKVEEVV-KPWASGENVYSYACQNHICRNLSIFCCCVILIVIVVIVV 180 190 200 210 220 pF1KE1 KCFTSE : NP_113 KTAI 230 >>XP_016861791 (OMIM: 609138) PREDICTED: receptor-transp (225 aa) initn: 329 init1: 154 opt: 319 Z-score: 388.6 bits: 79.2 E(85289): 6.6e-15 Smith-Waterman score: 330; 31.2% identity (53.2% similar) in 237 aa overlap (8-240:10-213) 10 20 30 40 50 pF1KE1 MVVDFWTWEQTFQELIQEAKPRATWTLKLDGNLQLDCLAQGWKQY-QQRAFGWFRCSS :...: : .. ::: .: : .: ::. . :: ::::: .:.: : :.:: XP_016 MCTSLTTCEWKKVFYEKMEVAKPADSWELIIDPNLKPSELAPGWKQYLEQHASGRFHCSW 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE1 CQRSWASAQVQILCHTYWEHWTSQGQVRMRLFGQRCQKCSWSQYEMPEFSSDSTMRILSN : ..: ::.: :: : . .. :.::::.: : : .:. .. . . .. ...: XP_016 CWHTWQSAHVVILFHMFLDRAQRAGSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDN 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 LVQHILKKYY---GNGMRKSPEMPVILEVSLEGSHDTANCEACTLGICGQGLKSYMTKPS :. . .. : :. .: . : : . :::: :: ::: XP_016 LITSLREQCYEEDGGQYRIH-----VASRPDSGPHRAEFCEACQEGIVHW-------KPS 130 140 150 160 180 190 200 210 220 230 pF1KE1 KSLLPHLKTGNSSPGIGAVYLANQAKNQSDEAKEAKGSGYEKLGPSRDPDPLNICVFILL ..:: . : .: :.. . :. ::::. :. : :.: XP_016 EKLLEEEVTTYTSE-------ASKPRAQA-------GSGYNFLS-------LRWCLFWAS 170 180 190 200 240 pF1KE1 LVFIVVKCFTSE : ..:: XP_016 LCLLVVYLQFSFLSPAFF 210 220 >>NP_001004312 (OMIM: 609138) receptor-transporting prot (225 aa) initn: 329 init1: 154 opt: 319 Z-score: 388.6 bits: 79.2 E(85289): 6.6e-15 Smith-Waterman score: 330; 31.2% identity (53.2% similar) in 237 aa overlap (8-240:10-213) 10 20 30 40 50 pF1KE1 MVVDFWTWEQTFQELIQEAKPRATWTLKLDGNLQLDCLAQGWKQY-QQRAFGWFRCSS :...: : .. ::: .: : .: ::. . :: ::::: .:.: : :.:: NP_001 MCTSLTTCEWKKVFYEKMEVAKPADSWELIIDPNLKPSELAPGWKQYLEQHASGRFHCSW 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE1 CQRSWASAQVQILCHTYWEHWTSQGQVRMRLFGQRCQKCSWSQYEMPEFSSDSTMRILSN : ..: ::.: :: : . .. :.::::.: : : .:. .. . . .. ...: NP_001 CWHTWQSAHVVILFHMFLDRAQRAGSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDN 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 LVQHILKKYY---GNGMRKSPEMPVILEVSLEGSHDTANCEACTLGICGQGLKSYMTKPS :. . .. : :. .: . : : . :::: :: ::: NP_001 LITSLREQCYEEDGGQYRIH-----VASRPDSGPHRAEFCEACQEGIVHW-------KPS 130 140 150 160 180 190 200 210 220 230 pF1KE1 KSLLPHLKTGNSSPGIGAVYLANQAKNQSDEAKEAKGSGYEKLGPSRDPDPLNICVFILL ..:: . : .: :.. . :. ::::. :. : :.: NP_001 EKLLEEEVTTYTSE-------ASKPRAQA-------GSGYNFLS-------LRWCLFWAS 170 180 190 200 240 pF1KE1 LVFIVVKCFTSE : ..:: NP_001 LCLLVVYLQFSFLSPAFF 210 220 >>XP_016861790 (OMIM: 609138) PREDICTED: receptor-transp (225 aa) initn: 329 init1: 154 opt: 319 Z-score: 388.6 bits: 79.2 E(85289): 6.6e-15 Smith-Waterman score: 330; 31.2% identity (53.2% similar) in 237 aa overlap (8-240:10-213) 10 20 30 40 50 pF1KE1 MVVDFWTWEQTFQELIQEAKPRATWTLKLDGNLQLDCLAQGWKQY-QQRAFGWFRCSS :...: : .. ::: .: : .: ::. . :: ::::: .:.: : :.:: XP_016 MCTSLTTCEWKKVFYEKMEVAKPADSWELIIDPNLKPSELAPGWKQYLEQHASGRFHCSW 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE1 CQRSWASAQVQILCHTYWEHWTSQGQVRMRLFGQRCQKCSWSQYEMPEFSSDSTMRILSN : ..: ::.: :: : . .. :.::::.: : : .:. .. . . .. ...: XP_016 CWHTWQSAHVVILFHMFLDRAQRAGSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDN 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 LVQHILKKYY---GNGMRKSPEMPVILEVSLEGSHDTANCEACTLGICGQGLKSYMTKPS :. . .. : :. .: . : : . :::: :: ::: XP_016 LITSLREQCYEEDGGQYRIH-----VASRPDSGPHRAEFCEACQEGIVHW-------KPS 130 140 150 160 180 190 200 210 220 230 pF1KE1 KSLLPHLKTGNSSPGIGAVYLANQAKNQSDEAKEAKGSGYEKLGPSRDPDPLNICVFILL ..:: . : .: :.. . :. ::::. :. : :.: XP_016 EKLLEEEVTTYTSE-------ASKPRAQA-------GSGYNFLS-------LRWCLFWAS 170 180 190 200 240 pF1KE1 LVFIVVKCFTSE : ..:: XP_016 LCLLVVYLQFSFLSPAFF 210 220 >>NP_714919 (OMIM: 609137) receptor-transporting protein (263 aa) initn: 347 init1: 169 opt: 315 Z-score: 382.9 bits: 78.4 E(85289): 1.4e-14 Smith-Waterman score: 319; 32.6% identity (57.0% similar) in 172 aa overlap (8-178:46-208) 10 20 30 pF1KE1 MVVDFWTWEQTFQELIQEAKPRATWTLKLDGNLQLDC :...: : ..:::: .: : .: ::. . NP_714 LPSLSVFSLRWKLPSLTTDETMCKSVTTDEWKKVFYEKMEEAKPADSWDLIIDPNLKHNV 20 30 40 50 60 70 40 50 60 70 80 90 pF1KE1 LAQGWKQYQQ-RAFGWFRCSSCQRSWASAQVQILCHTYWEHWTSQGQVRMRLFGQRCQKC :. ::::: . .: : :.:: : ..: : : :: : . .. :.::::.: : : .: NP_714 LSPGWKQYLELHASGRFHCSWCWHTWQSPYVVILFHMFLDRAQRAGSVRMRVFKQLCYEC 80 90 100 110 120 130 100 110 120 130 140 150 pF1KE1 SWSQYEMPEFSSDSTMRILSNLVQHILKKYYGNGMRKSPEMPVILEVSLEGSHDTANCEA . .. . . .. ...::. . .. ::. : . . . . : ::: NP_714 GTARLDESSMLEENIEGLVDNLITSLREQCYGE--RGGQYRIHVASRQDNRRHRGEFCEA 140 150 160 170 180 190 160 170 180 190 200 210 pF1KE1 CTLGICGQGLKSYMTKPSKSLLPHLKTGNSSPGIGAVYLANQAKNQSDEAKEAKGSGYEK : :: :::..:: NP_714 CQEGIVHW-------KPSEKLLEEEATTYTFSRAPSPTKSQDQTGSGWNFCSIPWCLFWA 200 210 220 230 240 246 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 01:35:20 2016 done: Mon Nov 7 01:35:21 2016 Total Scan time: 6.140 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]