FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1503, 257 aa 1>>>pF1KE1503 257 - 257 aa - 257 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4679+/-0.000363; mu= 13.6442+/- 0.022 mean_var=66.5023+/-13.343, 0's: 0 Z-trim(113.8): 16 B-trim: 0 in 0/52 Lambda= 0.157274 statistics sampled from 23297 (23313) to 23297 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.66), E-opt: 0.2 (0.273), width: 16 Scan time: 6.720 The best scores are: opt bits E(85289) NP_001304711 (OMIM: 604177) 60S ribosomal protein ( 257) 1731 401.5 7.7e-112 NP_001304700 (OMIM: 604177) 60S ribosomal protein ( 257) 1731 401.5 7.7e-112 NP_150644 (OMIM: 604177) 60S ribosomal protein L8 ( 257) 1731 401.5 7.7e-112 NP_000964 (OMIM: 604177) 60S ribosomal protein L8 ( 257) 1731 401.5 7.7e-112 XP_016869212 (OMIM: 604177) PREDICTED: 60S ribosom ( 291) 1380 321.9 8.1e-88 XP_005249218 (OMIM: 611822) PREDICTED: 39S ribosom ( 273) 171 47.5 2.9e-05 NP_057034 (OMIM: 611822) 39S ribosomal protein L2, ( 305) 171 47.6 3.2e-05 NP_001287777 (OMIM: 611822) 39S ribosomal protein ( 225) 134 39.1 0.0083 >>NP_001304711 (OMIM: 604177) 60S ribosomal protein L8 [ (257 aa) initn: 1731 init1: 1731 opt: 1731 Z-score: 2128.8 bits: 401.5 E(85289): 7.7e-112 Smith-Waterman score: 1731; 99.6% identity (100.0% similar) in 257 aa overlap (1-257:1-257) 10 20 30 40 50 60 pF1KE1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNVGNVLPVGTMPEGTIVCCLEEKP :::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::: NP_001 VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 GDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPIL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 KAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAA 190 200 210 220 230 240 250 pF1KE1 RRTGRLRGTKTVQEKEN ::::::::::::::::: NP_001 RRTGRLRGTKTVQEKEN 250 >>NP_001304700 (OMIM: 604177) 60S ribosomal protein L8 [ (257 aa) initn: 1731 init1: 1731 opt: 1731 Z-score: 2128.8 bits: 401.5 E(85289): 7.7e-112 Smith-Waterman score: 1731; 99.6% identity (100.0% similar) in 257 aa overlap (1-257:1-257) 10 20 30 40 50 60 pF1KE1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNVGNVLPVGTMPEGTIVCCLEEKP :::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::: NP_001 VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 GDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPIL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 KAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAA 190 200 210 220 230 240 250 pF1KE1 RRTGRLRGTKTVQEKEN ::::::::::::::::: NP_001 RRTGRLRGTKTVQEKEN 250 >>NP_150644 (OMIM: 604177) 60S ribosomal protein L8 [Hom (257 aa) initn: 1731 init1: 1731 opt: 1731 Z-score: 2128.8 bits: 401.5 E(85289): 7.7e-112 Smith-Waterman score: 1731; 99.6% identity (100.0% similar) in 257 aa overlap (1-257:1-257) 10 20 30 40 50 60 pF1KE1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_150 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNVGNVLPVGTMPEGTIVCCLEEKP :::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::: NP_150 VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 GDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_150 GDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPIL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 KAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_150 KAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAA 190 200 210 220 230 240 250 pF1KE1 RRTGRLRGTKTVQEKEN ::::::::::::::::: NP_150 RRTGRLRGTKTVQEKEN 250 >>NP_000964 (OMIM: 604177) 60S ribosomal protein L8 [Hom (257 aa) initn: 1731 init1: 1731 opt: 1731 Z-score: 2128.8 bits: 401.5 E(85289): 7.7e-112 Smith-Waterman score: 1731; 99.6% identity (100.0% similar) in 257 aa overlap (1-257:1-257) 10 20 30 40 50 60 pF1KE1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNVGNVLPVGTMPEGTIVCCLEEKP :::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::: NP_000 VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 GDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 GDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPIL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 KAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 KAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAA 190 200 210 220 230 240 250 pF1KE1 RRTGRLRGTKTVQEKEN ::::::::::::::::: NP_000 RRTGRLRGTKTVQEKEN 250 >>XP_016869212 (OMIM: 604177) PREDICTED: 60S ribosomal p (291 aa) initn: 1377 init1: 1377 opt: 1380 Z-score: 1697.6 bits: 321.9 E(85289): 8.1e-88 Smith-Waterman score: 1380; 98.1% identity (99.0% similar) in 210 aa overlap (1-210:1-209) 10 20 30 40 50 60 pF1KE1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNVGNVLPVGTMPEGTIVCCLEEKP :::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::: XP_016 VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 GDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPIL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 KAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAA ::::::::::::::::::::::::: : .: XP_016 KAGRAYHKYKAKRNCWPRVRGVAMN-VSNPEMQGWVLKLQWPHCWVGKSHPQVSLQEGDL 190 200 210 220 230 >>XP_005249218 (OMIM: 611822) PREDICTED: 39S ribosomal p (273 aa) initn: 122 init1: 56 opt: 171 Z-score: 215.5 bits: 47.5 E(85289): 2.9e-05 Smith-Waterman score: 171; 26.2% identity (53.8% similar) in 210 aa overlap (7-203:51-250) 10 20 30 pF1KE1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAE : : .: . :.: : : .:: . XP_005 VLTSVALNANFVSWKSRTKYTITPVKMRKSGGRDHTGRI-RVHGIGGGHKQRYRMIDFLR 30 40 50 60 70 40 50 60 70 80 pF1KE1 ------RHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGI----HTGQ . : .. : .. .:: :.: .: :. . :. :: . :.. : : :. XP_005 FRPEETKSGPFEEKVIQVRYDPCRSADIALVAGGSRKRWIIATENMQAGDTILNSNHIGR 80 90 100 110 120 130 90 100 110 120 130 140 pF1KE1 FVYCGKKAQLNVGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKT .. ... :.. :.:..: ::.. .: .:: .. ::.:. .... . : . XP_005 MAVAARE-----GDAHPLGALPVGTLINNVESEPGRGAQYIRAAGTCGVLLRKVNGT--A 140 150 160 170 180 190 150 160 170 180 190 200 pF1KE1 RVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNC---WPRVRGVA ..::: . . . :.:: :.. . . : :::: ... .:: : : : : XP_005 IIQLPSKRQMQVLETCVATVGRVSNVDHNKRVIGKAGR--NRWLGKRPNSGRWHRKGGWA 200 210 220 230 240 250 210 220 230 240 250 pF1KE1 MNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRGTKTVQEKEN XP_005 GRKIRPLPPMKSYVKLPSASAQS 260 270 >>NP_057034 (OMIM: 611822) 39S ribosomal protein L2, mit (305 aa) initn: 122 init1: 56 opt: 171 Z-score: 214.7 bits: 47.6 E(85289): 3.2e-05 Smith-Waterman score: 171; 26.2% identity (53.8% similar) in 210 aa overlap (7-203:83-282) 10 20 30 pF1KE1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAE : : .: . :.: : : .:: . NP_057 VLTSVALNANFVSWKSRTKYTITPVKMRKSGGRDHTGRI-RVHGIGGGHKQRYRMIDFLR 60 70 80 90 100 110 40 50 60 70 80 pF1KE1 ------RHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGI----HTGQ . : .. : .. .:: :.: .: :. . :. :: . :.. : : :. NP_057 FRPEETKSGPFEEKVIQVRYDPCRSADIALVAGGSRKRWIIATENMQAGDTILNSNHIGR 120 130 140 150 160 170 90 100 110 120 130 140 pF1KE1 FVYCGKKAQLNVGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKT .. ... :.. :.:..: ::.. .: .:: .. ::.:. .... . : . NP_057 MAVAARE-----GDAHPLGALPVGTLINNVESEPGRGAQYIRAAGTCGVLLRKVNGT--A 180 190 200 210 220 150 160 170 180 190 200 pF1KE1 RVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNC---WPRVRGVA ..::: . . . :.:: :.. . . : :::: ... .:: : : : : NP_057 IIQLPSKRQMQVLETCVATVGRVSNVDHNKRVIGKAGR--NRWLGKRPNSGRWHRKGGWA 230 240 250 260 270 280 210 220 230 240 250 pF1KE1 MNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRGTKTVQEKEN NP_057 GRKIRPLPPMKSYVKLPSASAQS 290 300 >>NP_001287777 (OMIM: 611822) 39S ribosomal protein L2, (225 aa) initn: 82 init1: 56 opt: 134 Z-score: 171.4 bits: 39.1 E(85289): 0.0083 Smith-Waterman score: 134; 24.8% identity (52.3% similar) in 149 aa overlap (7-145:83-225) 10 20 30 pF1KE1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAE : : .: . :.: : : .:: . NP_001 VLTSVALNANFVSWKSRTKYTITPVKMRKSGGRDHTGRI-RVHGIGGGHKQRYRMIDFLR 60 70 80 90 100 110 40 50 60 70 80 pF1KE1 ------RHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGI----HTGQ . : .. : .. .:: :.: .: :. . :. :: . :.. : : :. NP_001 FRPEETKSGPFEEKVIQVRYDPCRSADIALVAGGSRKRWIIATENMQAGDTILNSNHIGR 120 130 140 150 160 170 90 100 110 120 130 140 pF1KE1 FVYCGKKAQLNVGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKT .. ... :.. :.:..: ::.. .: .:: .. ::.: . . : .. NP_001 MAVAARE-----GDAHPLGALPVGTLINNVESEPGRGAQYIRAAGAGNVRSNSRPSIQR 180 190 200 210 220 150 160 170 180 190 200 pF1KE1 RVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNP 257 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 01:36:31 2016 done: Mon Nov 7 01:36:32 2016 Total Scan time: 6.720 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]