FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3932, 192 aa 1>>>pF1KE3932 192 - 192 aa - 192 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.1675+/-0.000605; mu= 11.0516+/- 0.037 mean_var=108.7305+/-22.790, 0's: 0 Z-trim(115.9): 65 B-trim: 942 in 1/50 Lambda= 0.122998 statistics sampled from 16406 (16480) to 16406 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.826), E-opt: 0.2 (0.506), width: 16 Scan time: 2.360 The best scores are: opt bits E(32554) CCDS43866.1 RNF183 gene_id:138065|Hs108|chr9 ( 192) 1352 249.2 1.2e-66 >>CCDS43866.1 RNF183 gene_id:138065|Hs108|chr9 (192 aa) initn: 1352 init1: 1352 opt: 1352 Z-score: 1310.2 bits: 249.2 E(32554): 1.2e-66 Smith-Waterman score: 1352; 99.0% identity (100.0% similar) in 192 aa overlap (1-192:1-192) 10 20 30 40 50 60 pF1KE3 MAEQQGRELEAECPVCWNPFNNTFHTPKMLDCCHSFCVECLAHLSLVTPARRRLLCPLCR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 MAEQQGRELEAECPVCWNPFNNTFHTPKMLDCCHSFCVECLAHLSLVTPARRRLLCPLCR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 QPTVLASGQPVTDLPTDTAMLTLLRLEPHHVILEGHQLCLKDQPKSRYFLRQPRVYTLDL :::::::::::::::::::::.:::::::::::::::::::::::::::::::.:::::: CCDS43 QPTVLASGQPVTDLPTDTAMLALLRLEPHHVILEGHQLCLKDQPKSRYFLRQPQVYTLDL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 GPQPGGQTGPPPDTASATVSTPILIPSHHSLRECFRNPQFRIFAYLMAVILSVTLLLIFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 GPQPGGQTGPPPDTASATVSTPILIPSHHSLRECFRNPQFRIFAYLMAVILSVTLLLIFS 130 140 150 160 170 180 190 pF1KE3 IFWTKQFLWGVG :::::::::::: CCDS43 IFWTKQFLWGVG 190 192 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 08:49:50 2016 done: Sun Nov 6 08:49:51 2016 Total Scan time: 2.360 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]