FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2350, 446 aa
  1>>>pF1KE2350 446 - 446 aa - 446 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6567+/-0.000939; mu= 10.5010+/- 0.056
 mean_var=102.5184+/-21.779, 0's: 0 Z-trim(107.1): 100  B-trim: 0 in 0/52
 Lambda= 0.126670
 statistics sampled from 9264 (9368) to 9264 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.659), E-opt: 0.2 (0.288), width:  16
 Scan time:  3.080

The best scores are:                                      opt bits E(32554)
CCDS5551.1 TBL2 gene_id:26608|Hs108|chr7           ( 447) 2941 548.3 5.5e-156


>>CCDS5551.1 TBL2 gene_id:26608|Hs108|chr7                (447 aa)
 initn: 2941 init1: 2941 opt: 2941  Z-score: 2913.9  bits: 548.3 E(32554): 5.5e-156
Smith-Waterman score: 2941; 99.1% identity (99.3% similar) in 444 aa overlap (1-444:1-444)

               10        20        30        40        50        60
pF1KE2 MELSQMSELMGLSVLLGLLALMATAAVARGWLRAGEERSGRPACQKANGFPPDKSSGSKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MELSQMSELMGLSVLLGLLALMATAAVARGWLRAGEERSGRPACQKANGFPPDKSSGSKK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 QKQYQRIRKEKPQQHNFTHRLLAAALKSHSGNISCMDFSSNGKYLATCADDRTIRIWSTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QKQYQRIRKEKPQQHNFTHRLLAAALKSHSGNISCMDFSSNGKYLATCADDRTIRIWSTK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 DFLQREHRSMRANVELDHATLVRFSPDCRAFIVWLANGDTLRVFKMTKREDGGYTFTATP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DFLQREHRSMRANVELDHATLVRFSPDCRAFIVWLANGDTLRVFKMTKREDGGYTFTATP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 EDFPKKHKAPVIDIGIANTGKFIMTASSDTTVLIWSLKGQVLSTINTNQMNNTHAAVSPC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 EDFPKKHKAPVIDIGIANTGKFIMTASSDTTVLIWSLKGQVLSTINTNQMNNTHAAVSPC
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 GRFVASCGFTPDVKVWEVCFGKKGEFQEVVRAFELKGHSAAVHSFAFSNDSRRMASVSKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GRFVASCGFTPDVKVWEVCFGKKGEFQEVVRAFELKGHSAAVHSFAFSNDSRRMASVSKD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 GTWKLWDTDVEYKKKQDPYLLKTGRFEEAAGAAPCRLALSPNAQVLALASGSSIHLYNTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GTWKLWDTDVEYKKKQDPYLLKTGRFEEAAGAAPCRLALSPNAQVLALASGSSIHLYNTR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 RGEKEECFERVHGECIANLSFDITGRFLASCGDRAVRLFHNTPGHRAMVEEMQGHLKRAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RGEKEECFERVHGECIANLSFDITGRFLASCGDRAVRLFHNTPGHRAMVEEMQGHLKRAS
              370       380       390       400       410       420

              430       440       
pF1KE2 NESTRQRLQQQLTQAQVTLGGPGAED 
       :::::::::::::::: :: . ::   
CCDS55 NESTRQRLQQQLTQAQETLKSLGALKK
              430       440       




446 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 01:37:33 2016 done: Mon Nov  7 01:37:34 2016
 Total Scan time:  3.080 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]