FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3594, 174 aa 1>>>pF1KE3594 174 - 174 aa - 174 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.7614+/-0.000278; mu= 16.3824+/- 0.017 mean_var=69.0971+/-14.087, 0's: 0 Z-trim(119.9): 6 B-trim: 1398 in 1/52 Lambda= 0.154292 statistics sampled from 34398 (34404) to 34398 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.78), E-opt: 0.2 (0.403), width: 16 Scan time: 5.500 The best scores are: opt bits E(85289) NP_006672 (OMIM: 605103) neuromedin-U isoform 1 pr ( 174) 1189 272.6 2.3e-73 XP_011532670 (OMIM: 605103) PREDICTED: neuromedin- ( 140) 936 216.2 1.7e-56 NP_001278975 (OMIM: 605103) neuromedin-U isoform 3 ( 149) 823 191.1 6.8e-49 XP_011532669 (OMIM: 605103) PREDICTED: neuromedin- ( 157) 689 161.2 6.7e-40 NP_001278974 (OMIM: 605103) neuromedin-U isoform 2 ( 158) 684 160.1 1.5e-39 >>NP_006672 (OMIM: 605103) neuromedin-U isoform 1 prepro (174 aa) initn: 1189 init1: 1189 opt: 1189 Z-score: 1438.2 bits: 272.6 E(85289): 2.3e-73 Smith-Waterman score: 1189; 100.0% identity (100.0% similar) in 174 aa overlap (1-174:1-174) 10 20 30 40 50 60 pF1KE3 MLRTESCRPRSPAGQVAAASPLLLLLLLLAWCAGACRGAPILPQGLQPEQQLQLWNEIDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 MLRTESCRPRSPAGQVAAASPLLLLLLLLAWCAGACRGAPILPQGLQPEQQLQLWNEIDD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 TCSSFLSIDSQPQASNALEELCFMIMGMLPKPQEQDEKDNTKRFLFHYSKTQKLGKSNVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 TCSSFLSIDSQPQASNALEELCFMIMGMLPKPQEQDEKDNTKRFLFHYSKTQKLGKSNVV 70 80 90 100 110 120 130 140 150 160 170 pF1KE3 SSVVHPLLQLVPHLHERRMKRFRVDEEFQSPFASQSRGYFLFRPRNGRRSAGFI :::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 SSVVHPLLQLVPHLHERRMKRFRVDEEFQSPFASQSRGYFLFRPRNGRRSAGFI 130 140 150 160 170 >>XP_011532670 (OMIM: 605103) PREDICTED: neuromedin-U is (140 aa) initn: 936 init1: 936 opt: 936 Z-score: 1135.1 bits: 216.2 E(85289): 1.7e-56 Smith-Waterman score: 936; 100.0% identity (100.0% similar) in 137 aa overlap (38-174:4-140) 10 20 30 40 50 60 pF1KE3 RPRSPAGQVAAASPLLLLLLLLAWCAGACRGAPILPQGLQPEQQLQLWNEIDDTCSSFLS :::::::::::::::::::::::::::::: XP_011 METGAPILPQGLQPEQQLQLWNEIDDTCSSFLS 10 20 30 70 80 90 100 110 120 pF1KE3 IDSQPQASNALEELCFMIMGMLPKPQEQDEKDNTKRFLFHYSKTQKLGKSNVVSSVVHPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 IDSQPQASNALEELCFMIMGMLPKPQEQDEKDNTKRFLFHYSKTQKLGKSNVVSSVVHPL 40 50 60 70 80 90 130 140 150 160 170 pF1KE3 LQLVPHLHERRMKRFRVDEEFQSPFASQSRGYFLFRPRNGRRSAGFI ::::::::::::::::::::::::::::::::::::::::::::::: XP_011 LQLVPHLHERRMKRFRVDEEFQSPFASQSRGYFLFRPRNGRRSAGFI 100 110 120 130 140 >>NP_001278975 (OMIM: 605103) neuromedin-U isoform 3 pre (149 aa) initn: 819 init1: 819 opt: 823 Z-score: 998.8 bits: 191.1 E(85289): 6.8e-49 Smith-Waterman score: 959; 85.6% identity (85.6% similar) in 174 aa overlap (1-174:1-149) 10 20 30 40 50 60 pF1KE3 MLRTESCRPRSPAGQVAAASPLLLLLLLLAWCAGACRGAPILPQGLQPEQQLQLWNEIDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MLRTESCRPRSPAGQVAAASPLLLLLLLLAWCAGACRGAPILPQGLQPEQQLQLWNEIDD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 TCSSFLSIDSQPQASNALEELCFMIMGMLPKPQEQDEKDNTKRFLFHYSKTQKLGKSNVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TCSSFLSIDSQPQASNALEELCFMIMGMLPKPQEQDEKDNTKRFLFHYSKTQKLGKSNVV 70 80 90 100 110 120 130 140 150 160 170 pF1KE3 SSVVHPLLQLVPHLHERRMKRFRVDEEFQSPFASQSRGYFLFRPRNGRRSAGFI ::::::::::::::::::::::::::::: NP_001 -------------------------EEFQSPFASQSRGYFLFRPRNGRRSAGFI 130 140 >>XP_011532669 (OMIM: 605103) PREDICTED: neuromedin-U is (157 aa) initn: 689 init1: 689 opt: 689 Z-score: 837.3 bits: 161.2 E(85289): 6.7e-40 Smith-Waterman score: 689; 100.0% identity (100.0% similar) in 102 aa overlap (73-174:56-157) 50 60 70 80 90 100 pF1KE3 PQGLQPEQQLQLWNEIDDTCSSFLSIDSQPQASNALEELCFMIMGMLPKPQEQDEKDNTK :::::::::::::::::::::::::::::: XP_011 RKALLLQPSFCCERNQRIPTVLIIYRRILFQASNALEELCFMIMGMLPKPQEQDEKDNTK 30 40 50 60 70 80 110 120 130 140 150 160 pF1KE3 RFLFHYSKTQKLGKSNVVSSVVHPLLQLVPHLHERRMKRFRVDEEFQSPFASQSRGYFLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 RFLFHYSKTQKLGKSNVVSSVVHPLLQLVPHLHERRMKRFRVDEEFQSPFASQSRGYFLF 90 100 110 120 130 140 170 pF1KE3 RPRNGRRSAGFI :::::::::::: XP_011 RPRNGRRSAGFI 150 >>NP_001278974 (OMIM: 605103) neuromedin-U isoform 2 pre (158 aa) initn: 711 init1: 684 opt: 684 Z-score: 831.2 bits: 160.1 E(85289): 1.5e-39 Smith-Waterman score: 1038; 90.8% identity (90.8% similar) in 174 aa overlap (1-174:1-158) 10 20 30 40 50 60 pF1KE3 MLRTESCRPRSPAGQVAAASPLLLLLLLLAWCAGACRGAPILPQGLQPEQQLQLWNEIDD ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MLRTESCRPRSPAGQVAAASPLLLLLLLLAWCAGACRGAPILPQGLQPEQQLQLWNE--- 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 TCSSFLSIDSQPQASNALEELCFMIMGMLPKPQEQDEKDNTKRFLFHYSKTQKLGKSNVV ::::::::::::::::::::::::::::::::::::::::::::::: NP_001 -------------ASNALEELCFMIMGMLPKPQEQDEKDNTKRFLFHYSKTQKLGKSNVV 60 70 80 90 100 130 140 150 160 170 pF1KE3 SSVVHPLLQLVPHLHERRMKRFRVDEEFQSPFASQSRGYFLFRPRNGRRSAGFI :::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SSVVHPLLQLVPHLHERRMKRFRVDEEFQSPFASQSRGYFLFRPRNGRRSAGFI 110 120 130 140 150 174 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 01:38:09 2016 done: Mon Nov 7 01:38:10 2016 Total Scan time: 5.500 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]