FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3594, 174 aa 1>>>pF1KE3594 174 - 174 aa - 174 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9866+/-0.000568; mu= 14.9518+/- 0.034 mean_var=67.8261+/-13.561, 0's: 0 Z-trim(113.4): 8 B-trim: 748 in 1/51 Lambda= 0.155731 statistics sampled from 14013 (14018) to 14013 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.793), E-opt: 0.2 (0.431), width: 16 Scan time: 2.110 The best scores are: opt bits E(32554) CCDS3501.1 NMU gene_id:10874|Hs108|chr4 ( 174) 1189 274.9 1.7e-74 CCDS77914.1 NMU gene_id:10874|Hs108|chr4 ( 149) 823 192.7 8.6e-50 CCDS75125.1 NMU gene_id:10874|Hs108|chr4 ( 158) 684 161.4 2.3e-40 >>CCDS3501.1 NMU gene_id:10874|Hs108|chr4 (174 aa) initn: 1189 init1: 1189 opt: 1189 Z-score: 1450.9 bits: 274.9 E(32554): 1.7e-74 Smith-Waterman score: 1189; 100.0% identity (100.0% similar) in 174 aa overlap (1-174:1-174) 10 20 30 40 50 60 pF1KE3 MLRTESCRPRSPAGQVAAASPLLLLLLLLAWCAGACRGAPILPQGLQPEQQLQLWNEIDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS35 MLRTESCRPRSPAGQVAAASPLLLLLLLLAWCAGACRGAPILPQGLQPEQQLQLWNEIDD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 TCSSFLSIDSQPQASNALEELCFMIMGMLPKPQEQDEKDNTKRFLFHYSKTQKLGKSNVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS35 TCSSFLSIDSQPQASNALEELCFMIMGMLPKPQEQDEKDNTKRFLFHYSKTQKLGKSNVV 70 80 90 100 110 120 130 140 150 160 170 pF1KE3 SSVVHPLLQLVPHLHERRMKRFRVDEEFQSPFASQSRGYFLFRPRNGRRSAGFI :::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS35 SSVVHPLLQLVPHLHERRMKRFRVDEEFQSPFASQSRGYFLFRPRNGRRSAGFI 130 140 150 160 170 >>CCDS77914.1 NMU gene_id:10874|Hs108|chr4 (149 aa) initn: 819 init1: 819 opt: 823 Z-score: 1007.4 bits: 192.7 E(32554): 8.6e-50 Smith-Waterman score: 959; 85.6% identity (85.6% similar) in 174 aa overlap (1-174:1-149) 10 20 30 40 50 60 pF1KE3 MLRTESCRPRSPAGQVAAASPLLLLLLLLAWCAGACRGAPILPQGLQPEQQLQLWNEIDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 MLRTESCRPRSPAGQVAAASPLLLLLLLLAWCAGACRGAPILPQGLQPEQQLQLWNEIDD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 TCSSFLSIDSQPQASNALEELCFMIMGMLPKPQEQDEKDNTKRFLFHYSKTQKLGKSNVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 TCSSFLSIDSQPQASNALEELCFMIMGMLPKPQEQDEKDNTKRFLFHYSKTQKLGKSNVV 70 80 90 100 110 120 130 140 150 160 170 pF1KE3 SSVVHPLLQLVPHLHERRMKRFRVDEEFQSPFASQSRGYFLFRPRNGRRSAGFI ::::::::::::::::::::::::::::: CCDS77 -------------------------EEFQSPFASQSRGYFLFRPRNGRRSAGFI 130 140 >>CCDS75125.1 NMU gene_id:10874|Hs108|chr4 (158 aa) initn: 711 init1: 684 opt: 684 Z-score: 838.3 bits: 161.4 E(32554): 2.3e-40 Smith-Waterman score: 1038; 90.8% identity (90.8% similar) in 174 aa overlap (1-174:1-158) 10 20 30 40 50 60 pF1KE3 MLRTESCRPRSPAGQVAAASPLLLLLLLLAWCAGACRGAPILPQGLQPEQQLQLWNEIDD ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 MLRTESCRPRSPAGQVAAASPLLLLLLLLAWCAGACRGAPILPQGLQPEQQLQLWNE--- 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 TCSSFLSIDSQPQASNALEELCFMIMGMLPKPQEQDEKDNTKRFLFHYSKTQKLGKSNVV ::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 -------------ASNALEELCFMIMGMLPKPQEQDEKDNTKRFLFHYSKTQKLGKSNVV 60 70 80 90 100 130 140 150 160 170 pF1KE3 SSVVHPLLQLVPHLHERRMKRFRVDEEFQSPFASQSRGYFLFRPRNGRRSAGFI :::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 SSVVHPLLQLVPHLHERRMKRFRVDEEFQSPFASQSRGYFLFRPRNGRRSAGFI 110 120 130 140 150 174 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 01:38:08 2016 done: Mon Nov 7 01:38:09 2016 Total Scan time: 2.110 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]