(Circular) (Six-base) MAPSORT of: pFN21AB7953.seq Check: 243 from: 1 to: 5473 pFN21AB7953 5473 bp With 182 enzymes: SgfI * April 15, 2010 09:29 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3283 278 Size: 53 83 186 936 1747 2468 Fragments arranged by size: 2468 1747 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2816 1937 Size: 879 4594 Acc65I G'GTAC_C Cuts at: 2794 2794 Size: 5473 AclI AA'CG_TT Cuts at: 1563 3600 3973 1563 Size: 2037 373 3063 Fragments arranged by size: 3063 2037 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 3536 4920 5188 1632 Size: 1904 1384 268 1917 Fragments arranged by size: 1917 1904 1384 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5276 AflIII A'CryG_T Cuts at: 1203 4372 5349 1203 Size: 3169 977 1327 Fragments arranged by size: 3169 1327 977 AgeI A'CCGG_T Cuts at: 4304 4304 Size: 5473 AhdI GACnn_n'nnGTC Cuts at: 4202 4202 Size: 5473 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5473 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5473 AlwNI CAG_nnn'CTG Cuts at: 3216 4788 3216 Size: 1572 3901 ApaLI G'TGCA_C Cuts at: 3530 4686 3530 Size: 1156 4317 ApoI r'AATT_y Cuts at: 1493 2782 3008 3160 5269 1493 Size: 1289 226 152 2109 1697 Fragments arranged by size: 2109 1697 1289 226 152 AseI AT'TA_AT Cuts at: 160 1032 4027 160 Size: 872 2995 1606 Fragments arranged by size: 2995 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5473 AvaI C'yCGr_G Cuts at: 1870 1943 2060 2798 1870 Size: 73 117 738 4545 Fragments arranged by size: 4545 738 117 73 BamHI G'GATC_C Cuts at: 2154 2803 3170 2154 Size: 649 367 4457 Fragments arranged by size: 4457 649 367 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2794 4249 618 Size: 325 217 627 1007 1455 1842 Fragments arranged by size: 1842 1455 1007 627 325 217 BanII G_rGCy'C Cuts at: 1391 2183 2747 2792 1391 Size: 792 564 45 4072 Fragments arranged by size: 4072 792 564 45 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2343 928 Size: 971 444 4058 Fragments arranged by size: 4058 971 444 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 1987 2021 3664 3698 1903 Size: 34 50 34 1643 34 3678 Fragments arranged by size: 3678 1643 50 34 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3365 4575 3365 Size: 1210 4263 BclI T'GATC_A Cuts at: 1548 1548 Size: 5473 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 2236 4084 136 Size: 107 122 71 631 605 564 1848 1525 Fragments arranged by size: 1848 1525 631 605 564 122 107 71 BglII A'GATC_T Cuts at: 5468 5468 Size: 5473 BlpI GC'TnA_GC Cuts at: 2114 2890 2114 Size: 776 4697 Bme1580I G_kGCm'C Cuts at: 1790 2067 2489 3534 4690 1790 Size: 277 422 1045 1156 2573 Fragments arranged by size: 2573 1156 1045 422 277 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5473 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 3204 4162 442 Size: 416 53 83 399 24 1787 958 1753 Fragments arranged by size: 1787 1753 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5473 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2225 2732 4133 1239 Size: 986 507 1401 2579 Fragments arranged by size: 2579 1401 986 507 Bpu10I CC'TnA_GC Cuts at: 2016 2016 Size: 5473 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 2489 3598 4463 4761 2489 Size: 1109 865 298 3201 Fragments arranged by size: 3201 1109 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 4136 882 Size: 617 2637 2219 Fragments arranged by size: 2637 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 2647 3264 493 Size: 711 1443 617 2702 Fragments arranged by size: 2702 1443 711 617 BsaBI GATnn'nnATC Cuts at: 5467 5467 Size: 5473 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2033 3280 3662 4297 Size: 53 83 186 936 500 1247 382 635 Cuts at: 4297 275 Size: 1451 Fragments arranged by size: 1451 1247 936 635 500 382 186 83 53 BsaWI w'CCGG_w Cuts at: 2673 3906 4304 4578 4725 5136 2673 Size: 1233 398 274 147 411 3010 Fragments arranged by size: 3010 1233 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 2270 2300 1178 Size: 30 165 30 867 30 4351 Fragments arranged by size: 4351 867 165 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2573 1186 Size: 1387 4086 BseYI C'CCAG_C Cuts at: 4676 5172 4676 Size: 496 4977 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 4900 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2923 3684 4712 1540 Size: 275 186 922 761 1028 2301 Fragments arranged by size: 2301 1028 922 761 275 186 BsiHKAI G_wGCw'C Cuts at: 2646 2747 3534 3619 4690 2646 Size: 101 787 85 1071 3429 Fragments arranged by size: 3429 1071 787 101 85 BsmI GAATG_Cn' Cuts at: 2984 3077 2984 Size: 93 5380 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2067 2183 2489 2646 2747 2792 3534 Size: 399 277 116 306 157 101 45 742 Cuts at: 3534 3619 4690 1391 Size: 85 1071 2174 Fragments arranged by size: 2174 1071 742 399 306 277 157 116 101 85 45 BspEI T'CCGG_A Cuts at: 5136 5136 Size: 5473 BspHI T'CATG_A Cuts at: 2574 2739 3362 5092 2574 Size: 165 623 1730 2955 Fragments arranged by size: 2955 1730 623 165 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2828 844 Size: 1984 3489 BsrBI CCG'CTC Cuts at: 1394 1823 3360 1394 Size: 429 1537 3507 Fragments arranged by size: 3507 1537 429 BsrDI GCAATG_nn' Cuts at: 65 1248 3968 4142 65 Size: 1183 2720 174 1396 Fragments arranged by size: 2720 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 2011 2635 4117 4304 1700 Size: 110 201 624 1482 187 2869 Fragments arranged by size: 2869 1482 624 201 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5473 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5473 BssSI C'ACGA_G Cuts at: 2495 3533 4545 2495 Size: 1038 1012 3423 Fragments arranged by size: 3423 1038 1012 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5473 BstBI TT'CG_AA Cuts at: 4277 4277 Size: 5473 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5473 BstXI CCAn_nnnn'nTGG Cuts at: 2326 2326 Size: 5473 BstYI r'GATC_y Cuts at: 1972 2154 2803 3170 3555 3572 5024 5110 5122 Size: 182 649 367 385 17 1452 86 12 Cuts at: 5122 5468 1972 Size: 346 1977 Fragments arranged by size: 1977 1452 649 385 367 346 182 86 17 12 Bsu36I CC'TnA_GG Cuts at: 2373 2373 Size: 5473 BtgI C'CryG_G Cuts at: 513 1065 2214 2319 513 Size: 552 1149 105 3667 Fragments arranged by size: 3667 1149 552 105 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4734 Fragments arranged by size: 4734 683 56 BtsI GCAGTG_nn' Cuts at: 2989 3783 3803 2989 Size: 794 20 4659 Fragments arranged by size: 4659 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5473 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5438 DraI TTT'AAA Cuts at: 2777 2777 Size: 5473 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 2032 4480 809 Size: 507 716 2448 1802 Fragments arranged by size: 2448 1802 716 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2568 2920 3809 Size: 54 1425 50 275 18 738 352 889 Cuts at: 3809 5438 8 Size: 1629 43 Fragments arranged by size: 1629 1425 889 738 352 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2920 1537 Size: 275 1108 4090 Fragments arranged by size: 4090 1108 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2411 2697 3403 1353 Size: 1058 286 706 3423 Fragments arranged by size: 3423 1058 706 286 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 2654 4060 4434 4580 387 Size: 1064 138 1065 1406 374 146 1280 Fragments arranged by size: 1406 1280 1065 1064 374 146 138 EcoICRI GAG'CTC Cuts at: 2745 2745 Size: 5473 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2225 2732 3536 4133 4920 5188 1239 Size: 393 593 507 804 597 787 268 1524 Fragments arranged by size: 1524 804 787 597 593 507 393 268 EcoNI CCTnn'n_nnAGG Cuts at: 2624 2624 Size: 5473 EcoO109I rG'GnC_Cy Cuts at: 2056 2056 Size: 5473 EcoRI G'AATT_C Cuts at: 2782 3160 2782 Size: 378 5095 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 2530 2530 Size: 5473 FspI TGC'GCA Cuts at: 3979 3979 Size: 5473 HaeII r_GCGC'y Cuts at: 1678 4620 1678 Size: 2942 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2270 2302 4114 4146 4188 Size: 32 135 32 698 32 1812 32 42 Cuts at: 4188 4220 1373 Size: 32 2626 Fragments arranged by size: 2626 1812 698 135 42 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2817 3063 669 Size: 988 281 879 246 3079 Fragments arranged by size: 3079 988 879 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5473 HpaI GTT'AAC Cuts at: 3063 3063 Size: 5473 KpnI G_GTAC'C Cuts at: 2798 2798 Size: 5473 MfeI C'AATT_G Cuts at: 3072 3072 Size: 5473 MluI A'CGCG_T Cuts at: 5349 5349 Size: 5473 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2016 4587 4771 1305 Size: 711 2571 184 2007 Fragments arranged by size: 2571 2007 711 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2570 10 Size: 54 1425 343 738 2913 Fragments arranged by size: 2913 1425 738 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 3431 3790 3949 518 Size: 648 2265 359 159 2042 Fragments arranged by size: 2265 2042 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2248 2755 2889 3566 4714 4959 1606 Size: 642 507 134 677 1148 245 2120 Fragments arranged by size: 2120 1148 677 642 507 245 134 NaeI GCC'GGC Cuts at: 2013 2637 2013 Size: 624 4849 NcoI C'CATG_G Cuts at: 513 1065 513 Size: 552 4921 NdeI CA'TA_TG Cuts at: 387 387 Size: 5473 NgoMIV G'CCGG_C Cuts at: 2011 2635 2011 Size: 624 4849 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5473 NotI GC'GGCC_GC Cuts at: 2920 2920 Size: 5473 NspI r_CATG'y Cuts at: 1132 1229 2831 4376 1132 Size: 97 1602 1545 2229 Fragments arranged by size: 2229 1602 1545 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5473 PciI A'CATG_T Cuts at: 4372 4372 Size: 5473 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5473 PfoI T'CCnGG_A Cuts at: 2709 2709 Size: 5473 PmeI GTTT'AAAC Cuts at: 2777 2777 Size: 5473 PmlI CAC'GTG Cuts at: 2647 2647 Size: 5473 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3542 3574 5055 5087 3542 Size: 32 1481 32 3928 Fragments arranged by size: 3928 1481 32 32 PpuMI rG'GwC_Cy Cuts at: 2056 2056 Size: 5473 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5473 PsiI TTA'TAA Cuts at: 3043 3043 Size: 5473 PstI C_TGCA'G Cuts at: 830 2253 2286 2825 830 Size: 1423 33 539 3478 Fragments arranged by size: 3478 1423 539 33 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5473 PvuII CAG'CTG Cuts at: 2248 2755 2248 Size: 507 4966 SacI G_AGCT'C Cuts at: 2747 2747 Size: 5473 SalI G'TCGA_C Cuts at: 1936 2815 1936 Size: 879 4594 SbfI CC_TGCA'GG Cuts at: 2825 2825 Size: 5473 ScaI AGT'ACT Cuts at: 3721 5433 3721 Size: 1712 3761 SfcI C'TryA_G Cuts at: 826 1045 2249 2282 2293 2821 3956 4637 4828 Size: 219 1204 33 11 528 1135 681 191 Cuts at: 4828 826 Size: 1471 Fragments arranged by size: 1471 1204 1135 681 528 219 191 33 11 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5473 SgrAI Cr'CCGG_yG Cuts at: 1700 2635 1700 Size: 935 4538 SmaI CCC'GGG Cuts at: 1872 2800 1872 Size: 928 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 2504 3577 4478 4740 820 Size: 197 926 561 1073 901 262 1553 Fragments arranged by size: 1553 1073 926 901 561 262 197 SnaBI TAC'GTA Cuts at: 493 3264 493 Size: 2771 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5473 SphI G_CATG'C Cuts at: 1132 2831 1132 Size: 1699 3774 SspI AAT'ATT Cuts at: 5 52 3397 5 Size: 47 3345 2081 Fragments arranged by size: 3345 2081 47 StuI AGG'CCT Cuts at: 1517 2717 1517 Size: 1200 4273 StyI C'CwwG_G Cuts at: 513 1065 2912 513 Size: 552 1847 3074 Fragments arranged by size: 3074 1847 552 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3500 3517 3670 3855 4300 325 Size: 1255 1920 17 153 185 445 1498 Fragments arranged by size: 1920 1498 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3719 5431 96 Size: 274 80 33 51 1443 1742 1712 138 Fragments arranged by size: 1742 1712 1443 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5433 5465 5433 Size: 32 5441 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5473 XbaI T'CTAG_A Cuts at: 2809 2809 Size: 5473 XcmI CCAnnnn_n'nnnnTGG Cuts at: 2326 2326 Size: 5473 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5473 XmaI C'CCGG_G Cuts at: 1870 2798 1870 Size: 928 4545 XmnI GAAnn'nnTTC Cuts at: 3602 3602 Size: 5473 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3281 276 Size: 53 83 186 936 1747 2468 Fragments arranged by size: 2468 1747 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI Bsu36I BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoNI EcoO109I EcoRI FalI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NaeI NcoI NdeI NgoMIV NheI NotI NspI PasI PciI PflMI PfoI PmeI PmlI PpiI PpuMI PshAI PsiI PstI PvuI PvuII SacI SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI ApaI AscI AvrII BaeI BbeI BbvCI BfrBI BplI BsiWI BsmBI BstZ17I DraIII EcoRV FseI FspAI KasI NarI NruI NsiI PacI PspOMI PspXI PsrI RsrII SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI