FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5204, 208 aa 1>>>pF1KE5204 208 - 208 aa - 208 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 9.9811+/-0.000332; mu= -5.9616+/- 0.021 mean_var=297.4661+/-58.682, 0's: 0 Z-trim(124.9): 16 B-trim: 2 in 1/61 Lambda= 0.074363 statistics sampled from 47351 (47369) to 47351 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.839), E-opt: 0.2 (0.555), width: 16 Scan time: 7.680 The best scores are: opt bits E(85289) NP_001263236 (OMIM: 605235,614937) nucleolar prote ( 208) 1460 168.6 6.3e-42 NP_001263238 (OMIM: 605235,614937) nucleolar prote ( 208) 1460 168.6 6.3e-42 NP_003937 (OMIM: 605235,614937) nucleolar protein ( 208) 1460 168.6 6.3e-42 NP_001263241 (OMIM: 605235,614937) nucleolar prote ( 208) 1460 168.6 6.3e-42 XP_016879332 (OMIM: 605235,614937) PREDICTED: nucl ( 270) 1460 168.7 7.7e-42 NP_001263248 (OMIM: 605235,614937) nucleolar prote ( 270) 1460 168.7 7.7e-42 NP_001171986 (OMIM: 605235,614937) nucleolar prote ( 219) 651 81.9 8.8e-16 XP_005256274 (OMIM: 605235,614937) PREDICTED: nucl ( 281) 651 82.0 1.1e-15 XP_011521726 (OMIM: 605235,614937) PREDICTED: nucl ( 295) 651 82.0 1.1e-15 NP_001263240 (OMIM: 605235,614937) nucleolar prote ( 181) 360 50.6 1.9e-06 XP_005256276 (OMIM: 605235,614937) PREDICTED: nucl ( 243) 360 50.7 2.4e-06 >>NP_001263236 (OMIM: 605235,614937) nucleolar protein 3 (208 aa) initn: 1460 init1: 1460 opt: 1460 Z-score: 873.7 bits: 168.6 E(85289): 6.3e-42 Smith-Waterman score: 1460; 100.0% identity (100.0% similar) in 208 aa overlap (1-208:1-208) 10 20 30 40 50 60 pF1KE5 MGNAQERPSETIDRERKRLVETLQADSGLLLDALLARGVLTGPEYEALDALPDAERRVRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MGNAQERPSETIDRERKRLVETLQADSGLLLDALLARGVLTGPEYEALDALPDAERRVRR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 LLLLVQGKGEAACQELLRCAQRTAGAPDPAWDWQHVGPGYRDRSYDPPCPGHWTPEAPGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LLLLVQGKGEAACQELLRCAQRTAGAPDPAWDWQHVGPGYRDRSYDPPCPGHWTPEAPGS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 GTTCPGLPRASDPDEAGGPEGSEAVQSGTPEEPEPELEAEASKEAEPEPEPEPELEPEAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GTTCPGLPRASDPDEAGGPEGSEAVQSGTPEEPEPELEAEASKEAEPEPEPEPELEPEAE 130 140 150 160 170 180 190 200 pF1KE5 AEPEPELEPEPDPEPEPDFEERDESEDS :::::::::::::::::::::::::::: NP_001 AEPEPELEPEPDPEPEPDFEERDESEDS 190 200 >>NP_001263238 (OMIM: 605235,614937) nucleolar protein 3 (208 aa) initn: 1460 init1: 1460 opt: 1460 Z-score: 873.7 bits: 168.6 E(85289): 6.3e-42 Smith-Waterman score: 1460; 100.0% identity (100.0% similar) in 208 aa overlap (1-208:1-208) 10 20 30 40 50 60 pF1KE5 MGNAQERPSETIDRERKRLVETLQADSGLLLDALLARGVLTGPEYEALDALPDAERRVRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MGNAQERPSETIDRERKRLVETLQADSGLLLDALLARGVLTGPEYEALDALPDAERRVRR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 LLLLVQGKGEAACQELLRCAQRTAGAPDPAWDWQHVGPGYRDRSYDPPCPGHWTPEAPGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LLLLVQGKGEAACQELLRCAQRTAGAPDPAWDWQHVGPGYRDRSYDPPCPGHWTPEAPGS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 GTTCPGLPRASDPDEAGGPEGSEAVQSGTPEEPEPELEAEASKEAEPEPEPEPELEPEAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GTTCPGLPRASDPDEAGGPEGSEAVQSGTPEEPEPELEAEASKEAEPEPEPEPELEPEAE 130 140 150 160 170 180 190 200 pF1KE5 AEPEPELEPEPDPEPEPDFEERDESEDS :::::::::::::::::::::::::::: NP_001 AEPEPELEPEPDPEPEPDFEERDESEDS 190 200 >>NP_003937 (OMIM: 605235,614937) nucleolar protein 3 is (208 aa) initn: 1460 init1: 1460 opt: 1460 Z-score: 873.7 bits: 168.6 E(85289): 6.3e-42 Smith-Waterman score: 1460; 100.0% identity (100.0% similar) in 208 aa overlap (1-208:1-208) 10 20 30 40 50 60 pF1KE5 MGNAQERPSETIDRERKRLVETLQADSGLLLDALLARGVLTGPEYEALDALPDAERRVRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 MGNAQERPSETIDRERKRLVETLQADSGLLLDALLARGVLTGPEYEALDALPDAERRVRR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 LLLLVQGKGEAACQELLRCAQRTAGAPDPAWDWQHVGPGYRDRSYDPPCPGHWTPEAPGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 LLLLVQGKGEAACQELLRCAQRTAGAPDPAWDWQHVGPGYRDRSYDPPCPGHWTPEAPGS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 GTTCPGLPRASDPDEAGGPEGSEAVQSGTPEEPEPELEAEASKEAEPEPEPEPELEPEAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 GTTCPGLPRASDPDEAGGPEGSEAVQSGTPEEPEPELEAEASKEAEPEPEPEPELEPEAE 130 140 150 160 170 180 190 200 pF1KE5 AEPEPELEPEPDPEPEPDFEERDESEDS :::::::::::::::::::::::::::: NP_003 AEPEPELEPEPDPEPEPDFEERDESEDS 190 200 >>NP_001263241 (OMIM: 605235,614937) nucleolar protein 3 (208 aa) initn: 1460 init1: 1460 opt: 1460 Z-score: 873.7 bits: 168.6 E(85289): 6.3e-42 Smith-Waterman score: 1460; 100.0% identity (100.0% similar) in 208 aa overlap (1-208:1-208) 10 20 30 40 50 60 pF1KE5 MGNAQERPSETIDRERKRLVETLQADSGLLLDALLARGVLTGPEYEALDALPDAERRVRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MGNAQERPSETIDRERKRLVETLQADSGLLLDALLARGVLTGPEYEALDALPDAERRVRR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 LLLLVQGKGEAACQELLRCAQRTAGAPDPAWDWQHVGPGYRDRSYDPPCPGHWTPEAPGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LLLLVQGKGEAACQELLRCAQRTAGAPDPAWDWQHVGPGYRDRSYDPPCPGHWTPEAPGS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 GTTCPGLPRASDPDEAGGPEGSEAVQSGTPEEPEPELEAEASKEAEPEPEPEPELEPEAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GTTCPGLPRASDPDEAGGPEGSEAVQSGTPEEPEPELEAEASKEAEPEPEPEPELEPEAE 130 140 150 160 170 180 190 200 pF1KE5 AEPEPELEPEPDPEPEPDFEERDESEDS :::::::::::::::::::::::::::: NP_001 AEPEPELEPEPDPEPEPDFEERDESEDS 190 200 >>XP_016879332 (OMIM: 605235,614937) PREDICTED: nucleola (270 aa) initn: 1460 init1: 1460 opt: 1460 Z-score: 872.2 bits: 168.7 E(85289): 7.7e-42 Smith-Waterman score: 1460; 100.0% identity (100.0% similar) in 208 aa overlap (1-208:63-270) 10 20 30 pF1KE5 MGNAQERPSETIDRERKRLVETLQADSGLL :::::::::::::::::::::::::::::: XP_016 WRGRRTPSSPCWPPGPVLAEPSGGWDRAPTMGNAQERPSETIDRERKRLVETLQADSGLL 40 50 60 70 80 90 40 50 60 70 80 90 pF1KE5 LDALLARGVLTGPEYEALDALPDAERRVRRLLLLVQGKGEAACQELLRCAQRTAGAPDPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LDALLARGVLTGPEYEALDALPDAERRVRRLLLLVQGKGEAACQELLRCAQRTAGAPDPA 100 110 120 130 140 150 100 110 120 130 140 150 pF1KE5 WDWQHVGPGYRDRSYDPPCPGHWTPEAPGSGTTCPGLPRASDPDEAGGPEGSEAVQSGTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 WDWQHVGPGYRDRSYDPPCPGHWTPEAPGSGTTCPGLPRASDPDEAGGPEGSEAVQSGTP 160 170 180 190 200 210 160 170 180 190 200 pF1KE5 EEPEPELEAEASKEAEPEPEPEPELEPEAEAEPEPELEPEPDPEPEPDFEERDESEDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 EEPEPELEAEASKEAEPEPEPEPELEPEAEAEPEPELEPEPDPEPEPDFEERDESEDS 220 230 240 250 260 270 >>NP_001263248 (OMIM: 605235,614937) nucleolar protein 3 (270 aa) initn: 1460 init1: 1460 opt: 1460 Z-score: 872.2 bits: 168.7 E(85289): 7.7e-42 Smith-Waterman score: 1460; 100.0% identity (100.0% similar) in 208 aa overlap (1-208:63-270) 10 20 30 pF1KE5 MGNAQERPSETIDRERKRLVETLQADSGLL :::::::::::::::::::::::::::::: NP_001 WRGRRTPSSPCWPPGPVLAEPSGGWDRAPTMGNAQERPSETIDRERKRLVETLQADSGLL 40 50 60 70 80 90 40 50 60 70 80 90 pF1KE5 LDALLARGVLTGPEYEALDALPDAERRVRRLLLLVQGKGEAACQELLRCAQRTAGAPDPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LDALLARGVLTGPEYEALDALPDAERRVRRLLLLVQGKGEAACQELLRCAQRTAGAPDPA 100 110 120 130 140 150 100 110 120 130 140 150 pF1KE5 WDWQHVGPGYRDRSYDPPCPGHWTPEAPGSGTTCPGLPRASDPDEAGGPEGSEAVQSGTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 WDWQHVGPGYRDRSYDPPCPGHWTPEAPGSGTTCPGLPRASDPDEAGGPEGSEAVQSGTP 160 170 180 190 200 210 160 170 180 190 200 pF1KE5 EEPEPELEAEASKEAEPEPEPEPELEPEAEAEPEPELEPEPDPEPEPDFEERDESEDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EEPEPELEAEASKEAEPEPEPEPELEPEAEAEPEPELEPEPDPEPEPDFEERDESEDS 220 230 240 250 260 270 >>NP_001171986 (OMIM: 605235,614937) nucleolar protein 3 (219 aa) initn: 661 init1: 635 opt: 651 Z-score: 404.3 bits: 81.9 E(85289): 8.8e-16 Smith-Waterman score: 651; 73.6% identity (77.8% similar) in 144 aa overlap (1-139:1-139) 10 20 30 40 50 60 pF1KE5 MGNAQERPSETIDRERKRLVETLQADSGLLLDALLARGVLTGPEYEALDALPDAERRVRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MGNAQERPSETIDRERKRLVETLQADSGLLLDALLARGVLTGPEYEALDALPDAERRVRR 10 20 30 40 50 60 70 80 90 100 110 pF1KE5 LLLLVQGKGEAACQELLRCAQRTAGAPDPAWDWQHVGPGYRDRSYDPPCPGHWT-----P :::::::::::::::::::::::::::::::::::. : . :. : NP_001 LLLLVQGKGEAACQELLRCAQRTAGAPDPAWDWQHA-TGTAAMTLHAQATGRRRHPARGP 70 80 90 100 110 120 130 140 150 160 170 pF1KE5 EAPGSGTTCPGLPRASDPDEAGGPEGSEAVQSGTPEEPEPELEAEASKEAEPEPEPEPEL .::: :: : . : .: NP_001 HAPG----CPELQTLTRPGALRAPRRCNPGPRRSQSQSWKLRPLKRLNRSRSQSQSWNPR 120 130 140 150 160 170 >>XP_005256274 (OMIM: 605235,614937) PREDICTED: nucleola (281 aa) initn: 661 init1: 635 opt: 651 Z-score: 402.9 bits: 82.0 E(85289): 1.1e-15 Smith-Waterman score: 651; 73.6% identity (77.8% similar) in 144 aa overlap (1-139:63-201) 10 20 30 pF1KE5 MGNAQERPSETIDRERKRLVETLQADSGLL :::::::::::::::::::::::::::::: XP_005 WRGRRTPSSPCWPPGPVLAEPSGGWDRAPTMGNAQERPSETIDRERKRLVETLQADSGLL 40 50 60 70 80 90 40 50 60 70 80 90 pF1KE5 LDALLARGVLTGPEYEALDALPDAERRVRRLLLLVQGKGEAACQELLRCAQRTAGAPDPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 LDALLARGVLTGPEYEALDALPDAERRVRRLLLLVQGKGEAACQELLRCAQRTAGAPDPA 100 110 120 130 140 150 100 110 120 130 140 pF1KE5 WDWQHVGPGYRDRSYDPPCPGHWT-----PEAPGSGTTCPGLPRASDPDEAGGPEGSEAV :::::. : . :. :.::: :: : . : .: XP_005 WDWQHA-TGTAAMTLHAQATGRRRHPARGPHAPG----CPELQTLTRPGALRAPRRCNPG 160 170 180 190 200 150 160 170 180 190 200 pF1KE5 QSGTPEEPEPELEAEASKEAEPEPEPEPELEPEAEAEPEPELEPEPDPEPEPDFEERDES XP_005 PRRSQSQSWKLRPLKRLNRSRSQSQSWNPRLKQNQSRNWSQNRTQSPSPTSRKGTSPKIP 210 220 230 240 250 260 >>XP_011521726 (OMIM: 605235,614937) PREDICTED: nucleola (295 aa) initn: 654 init1: 635 opt: 651 Z-score: 402.6 bits: 82.0 E(85289): 1.1e-15 Smith-Waterman score: 651; 73.6% identity (77.8% similar) in 144 aa overlap (1-139:1-139) 10 20 30 40 50 60 pF1KE5 MGNAQERPSETIDRERKRLVETLQADSGLLLDALLARGVLTGPEYEALDALPDAERRVRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MGNAQERPSETIDRERKRLVETLQADSGLLLDALLARGVLTGPEYEALDALPDAERRVRR 10 20 30 40 50 60 70 80 90 100 110 pF1KE5 LLLLVQGKGEAACQELLRCAQRTAGAPDPAWDWQHVGPGYRDRSYDPPCPGHWT-----P :::::::::::::::::::::::::::::::::::. : . :. : XP_011 LLLLVQGKGEAACQELLRCAQRTAGAPDPAWDWQHA-TGTAAMTLHAQATGRRRHPARGP 70 80 90 100 110 120 130 140 150 160 170 pF1KE5 EAPGSGTTCPGLPRASDPDEAGGPEGSEAVQSGTPEEPEPELEAEASKEAEPEPEPEPEL .::: :: : . : .: XP_011 HAPG----CPELQTLTRPGALRAPRRCNPGPRRSQSQSWKLRPLKRLNRSRSQSQSWNPR 120 130 140 150 160 170 >>NP_001263240 (OMIM: 605235,614937) nucleolar protein 3 (181 aa) initn: 386 init1: 360 opt: 360 Z-score: 236.7 bits: 50.6 E(85289): 1.9e-06 Smith-Waterman score: 371; 54.9% identity (61.8% similar) in 144 aa overlap (1-144:1-113) 10 20 30 40 50 60 pF1KE5 MGNAQERPSETIDRERKRLVETLQADSGLLLDALLARGVLTGPEYEALDALPDAERRVRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::. NP_001 MGNAQERPSETIDRERKRLVETLQADSGLLLDALLARGVLTGPEYEALDALPDAERRAT- 10 20 30 40 50 70 80 90 100 110 120 pF1KE5 LLLLVQGKGEAACQELLRCAQRTAGAPDPAWDWQHVGPGYRDRSYDPPCPGHWTPEAPGS : :: . :: :. :: :: . : :: : ::. NP_001 --------GTAA---MTLHAQATGRRRHPAR-----GP------HAPGCPELQTLTRPGA 60 70 80 90 130 140 150 160 170 180 pF1KE5 GTTCPGLPRASDPDEAGGPEGSEAVQSGTPEEPEPELEAEASKEAEPEPEPEPELEPEAE . :: .: ::. :.. NP_001 LRA----PRRCNP----GPRRSQSQSWKLRPLKRLNRSRSQSQSWNPRLKQNQSRNWSQN 100 110 120 130 140 208 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 22:29:36 2016 done: Mon Nov 7 22:29:37 2016 Total Scan time: 7.680 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]