FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3917, 278 aa 1>>>pF1KE3917 278 - 278 aa - 278 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4173+/-0.000672; mu= 14.3692+/- 0.040 mean_var=67.0744+/-13.561, 0's: 0 Z-trim(110.2): 39 B-trim: 129 in 1/53 Lambda= 0.156601 statistics sampled from 11426 (11457) to 11426 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.729), E-opt: 0.2 (0.352), width: 16 Scan time: 2.510 The best scores are: opt bits E(32554) CCDS12526.1 FBXO17 gene_id:115290|Hs108|chr19 ( 278) 1960 451.3 3.6e-127 CCDS12527.1 FBXO27 gene_id:126433|Hs108|chr19 ( 283) 1157 269.8 1.5e-72 CCDS130.1 FBXO2 gene_id:26232|Hs108|chr1 ( 296) 501 121.6 6.4e-28 CCDS133.1 FBXO6 gene_id:26270|Hs108|chr1 ( 293) 492 119.6 2.6e-27 CCDS132.1 FBXO44 gene_id:93611|Hs108|chr1 ( 255) 450 110.1 1.7e-24 CCDS12529.1 NCCRP1 gene_id:342897|Hs108|chr19 ( 275) 254 65.8 3.8e-11 >>CCDS12526.1 FBXO17 gene_id:115290|Hs108|chr19 (278 aa) initn: 1960 init1: 1960 opt: 1960 Z-score: 2396.6 bits: 451.3 E(32554): 3.6e-127 Smith-Waterman score: 1960; 100.0% identity (100.0% similar) in 278 aa overlap (1-278:1-278) 10 20 30 40 50 60 pF1KE3 MGARLSRRRLPADPSLALDALPPELLVQVLSHVPPRSLVTRCRPVCRAWRDIVDGPTVWL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 MGARLSRRRLPADPSLALDALPPELLVQVLSHVPPRSLVTRCRPVCRAWRDIVDGPTVWL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 LQLARDRSAEGRALYAVAQRCLPSNEDKEEFPLCALARYCLRAPFGRNLIFNSCGEQGFR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 LQLARDRSAEGRALYAVAQRCLPSNEDKEEFPLCALARYCLRAPFGRNLIFNSCGEQGFR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 GWEVEHGGNGWAIEKNLTPVPGAPSQTCFVTSFEWCSKRQLVDLVMEGVWQELLDSAQIE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 GWEVEHGGNGWAIEKNLTPVPGAPSQTCFVTSFEWCSKRQLVDLVMEGVWQELLDSAQIE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 ICVADWWGARENCGCVYQLRVRLLDVYEKEVVKFSASPDPVLQWTERGCRQVSHVFTNFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 ICVADWWGARENCGCVYQLRVRLLDVYEKEVVKFSASPDPVLQWTERGCRQVSHVFTNFG 190 200 210 220 230 240 250 260 270 pF1KE3 KGIRYVSFEQYGRDVSSWVGHYGALVTHSSVRVRIRLS :::::::::::::::::::::::::::::::::::::: CCDS12 KGIRYVSFEQYGRDVSSWVGHYGALVTHSSVRVRIRLS 250 260 270 >>CCDS12527.1 FBXO27 gene_id:126433|Hs108|chr19 (283 aa) initn: 899 init1: 856 opt: 1157 Z-score: 1416.0 bits: 269.8 E(32554): 1.5e-72 Smith-Waterman score: 1157; 57.7% identity (79.0% similar) in 286 aa overlap (1-278:1-283) 10 20 30 40 50 pF1KE3 MGARLSR---RRLPA---DPSLALD--ALPPELLVQVLSHVPPRSLVTRCRPVCRAWRDI ::: .:: :.:: .: ::: ::::::. ::::::::.:. ::: :::.:: . CCDS12 MGASVSRGRAARVPAPEPEPEEALDLSQLPPELLLVVLSHVPPRTLLGRCRQVCRGWRAL 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE3 VDGPTVWLLQLARDRSAEGRALYAVAQRCLPSNEDKEEFPLCALARYCLRAPFGRNLIFN ::: ..::: ::::..: :::: .:. : .. .. : : :.:.: : :.::::: : CCDS12 VDGQALWLLILARDHGATGRALLHLARSC--QSPARNARP-CPLGRFCARRPIGRNLIRN 70 80 90 100 110 120 130 140 150 160 170 pF1KE3 SCGEQGFRGWEVEHGGNGWAIEKNLTPVPGAPSQTCFVTSFEWCSKRQLVDLVMEGVWQE ::..:.: : :.:::.::..:.: : :::::::::::::: :: :.:..:: ::.: : CCDS12 PCGQEGLRKWMVQHGGDGWVVEENRTTVPGAPSQTCFVTSFSWCCKKQVLDLEEEGLWPE 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE3 LLDSAQIEICVADWWGARENCGCVYQLRVRLLDVYEKEVVKFSASPDPVLQWTERGCRQV ::::..:::::.::::::.. ::.:.: :.:::. . . :::: :::. ::.. .: .: CCDS12 LLDSGRIEICVSDWWGARHDSGCMYRLLVQLLDANQTVLDKFSAVPDPIPQWNNNACLHV 180 190 200 210 220 230 240 250 260 270 pF1KE3 SHVFTNFGKGIRYVSFEQYGRDVSSWVGHYGALVTHSSVRVRIRLS .:::.:. :.:.::::. :.:.. :.::::: ::.::: ::.::: CCDS12 THVFSNIKMGVRFVSFEHRGQDTQFWAGHYGARVTNSSVIVRVRLS 240 250 260 270 280 >>CCDS130.1 FBXO2 gene_id:26232|Hs108|chr1 (296 aa) initn: 662 init1: 242 opt: 501 Z-score: 614.7 bits: 121.6 E(32554): 6.4e-28 Smith-Waterman score: 614; 39.2% identity (63.4% similar) in 268 aa overlap (18-273:47-294) 10 20 30 40 pF1KE3 MGARLSRRRLPADPSLALDALPPELLVQVLSHVPPRSLVTRCRPVCR :: :: ::..::. .: :: :: :: CCDS13 SPEEQPEEASAEEERPEDQQEEEAAAAAAYLDELPEPLLLRVLAALPAAELVQACRLVCL 20 30 40 50 60 70 50 60 70 80 90 100 pF1KE3 AWRDIVDGPTVWLLQLARDRSAEGRALYAVAQRCLPSNEDK-EEFPLCALARYCLRAPFG :...::: .:::. . :: : . . ..:. ..: . . : CCDS13 RWKELVDGAPLWLLKCQQ----EG----LVPEGGVEEERDHWQQFYFLSKRR-------- 80 90 100 110 120 110 120 130 140 150 pF1KE3 RNLIFNSCGEQGFRGW-EVEHGGNGWAIEKNLTPVPGAPS---------QTCFVTSFEWC :::. : :::. ..:: .:::::.:: .:. .:: . . :..::::: CCDS13 RNLLRNPCGEEDLEGWCDVEHGGDGWRVEE----LPGDSGVEFTHDESVKKYFASSFEWC 130 140 150 160 170 160 170 180 190 200 210 pF1KE3 SKRQLVDLVMEGVWQELLDSAQIEICVADWWGARENCGCVYQLRVRLLDVYEKEVVKFSA : :..:: :: :.::::..: : : ::...: . ::.:.: :.::. .:. ...::. CCDS13 RKAQVIDLQAEGYWEELLDTTQPAIVVKDWYSGRSDAGCLYELTVKLLSEHENVLAEFSS 180 190 200 210 220 230 220 230 240 250 260 270 pF1KE3 SPDPVLQWTERGC-RQVSHVFTNFGKGIRYVSFEQYGRDVSSWVGHYGALVTHSSVRVRI . : : .. : ..::.::..: :.:.: ::. :.: : : .:: ::.::: : CCDS13 GQVAVPQDSDGGGWMEISHTFTDYGPGVRFVRFEHGGQDSVYWKGWFGARVTNSSVWVEP 240 250 260 270 280 290 pF1KE3 RLS >>CCDS133.1 FBXO6 gene_id:26270|Hs108|chr1 (293 aa) initn: 571 init1: 409 opt: 492 Z-score: 603.8 bits: 119.6 E(32554): 2.6e-27 Smith-Waterman score: 601; 36.3% identity (64.0% similar) in 267 aa overlap (17-278:12-262) 10 20 30 40 50 60 pF1KE3 MGARLSRRRLPADPSLALDALPPELLVQVLSHVPPRSLVTRCRPVCRAWRDIVDGPTVWL ... :: ..:.....::: :.:. :: :: :::..: :.: CCDS13 MDAPHSKAALDSINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLMTLWK 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 LQLARDRSAEGRALYAVAQRCLPSNEDKEEFPLCALARYCLRAPFGRNLIFNSCGEQGFR . : :: . . . : : . : : ::. . :::. : :.:. . CCDS13 RKCLR----EG---FITKDWDQPVA-DWKIF-------YFLRS-LHRNLLRNPCAEEDMF 60 70 80 90 130 140 150 160 170 pF1KE3 GWEVE-HGGNGWAIEK----NLTPVPGAPSQTCFVTSFEWCSKRQLVDLVMEGVWQELLD .:... .::. : .:. . : : . ::::.: : : :::::: :: :.:::: CCDS13 AWQIDFNGGDRWKVESLPGAHGTDFPDPKVKKYFVTSYEMCLKSQLVDLVAEGYWEELLD 100 110 120 130 140 150 180 190 200 210 220 230 pF1KE3 SAQIEICVADWWGARENCGCVYQLRVRLLDVYEKEVVKFSASPDPVLQWTERGCRQVSHV . . .: : ::..:: .:::.:::.:.: .. ...: : . ::.. .::.. CCDS13 TFRPDIVVKDWFAARADCGCTYQLKVQLASADYFVLASFEPPPVTIQQWNNATWTEVSYT 160 170 180 190 200 210 240 250 260 270 pF1KE3 FTNFGKGIRYVSFEQYGRDVSSWVGHYGALVTHSSVRVRIRLS :... .:.::. :.. :::.. :.: :: ::.::. : ... CCDS13 FSDYPRGVRYILFQHGGRDTQYWAGWYGPRVTNSSIVVSPKMTRNQASSEAQPGQKHGQE 220 230 240 250 260 270 CCDS13 EAAQSPYRAVVQIF 280 290 >>CCDS132.1 FBXO44 gene_id:93611|Hs108|chr1 (255 aa) initn: 570 init1: 362 opt: 450 Z-score: 553.4 bits: 110.1 E(32554): 1.7e-24 Smith-Waterman score: 558; 36.3% identity (61.8% similar) in 262 aa overlap (18-273:6-250) 10 20 30 40 50 60 pF1KE3 MGARLSRRRLPADPSLALDALPPELLVQVLSHVPPRSLVTRCRPVCRAWRDIVDGPTVWL .. :: ..:.....::: :.:. :: :: :::..: :.: CCDS13 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWK 10 20 30 40 70 80 90 100 110 120 pF1KE3 LQLARDRSAEGRALYAVAQRCLPSNEDKEEFPLCALARYCLRAPFGRNLIFNSCGEQGFR . : :: . . . : : . : : ::. . :::. : :.:.::. CCDS13 RKCLR----EG---FITEDWDQPVA-DWKIF-------YFLRS-LHRNLLHNPCAEEGFE 50 60 70 80 90 130 140 150 160 170 pF1KE3 GWEVE-HGGNGWAIEKNLT-----PVPGAPSQTCFVTSFEWCSKRQLVDLVMEGVWQELL : .. .::. : .: .:. :. . ::::. : : :.::: :: :.::. CCDS13 FWSLDVNGGDEWKVE-DLSRDQRKEFPNDQVKKYFVTSYYTCLKSQVVDLKAEGYWEELM 100 110 120 130 140 150 180 190 200 210 220 230 pF1KE3 DSAQIEICVADWWGARENCGCVYQLRVRLLDVYEKEVVKFSASPDPVLQWTERGCRQVSH :... .: : ::..:: .:: ::: :.::. . . :. .: . : .. :.::: CCDS13 DTTRPDIEVKDWFAARPDCGSKYQLCVQLLSSAHAPLGTFQPDPATIQQKSDAKWREVSH 160 170 180 190 200 210 240 250 260 270 pF1KE3 VFTNFGKGIRYVSFEQYGRDVSSWVGHYGALVTHSSVRVRIRLS .:.:. :.::. :.. : :. :.: :: ::.::. . CCDS13 TFSNYPPGVRYIWFQHGGVDTHYWAGWYGPRVTNSSITIGPPLP 220 230 240 250 >>CCDS12529.1 NCCRP1 gene_id:342897|Hs108|chr19 (275 aa) initn: 309 init1: 163 opt: 254 Z-score: 313.6 bits: 65.8 E(32554): 3.8e-11 Smith-Waterman score: 256; 32.1% identity (54.2% similar) in 190 aa overlap (96-276:101-274) 70 80 90 100 110 120 pF1KE3 DRSAEGRALYAVAQRCLPSNEDKEEFPLCALARYCLRAPFGRNL-IFNSCGEQGFRGWEV : : ::.: ... :.. : . CCDS12 QLLLEEWGPLSGGLELPQRLTWKLLLLRRPLYRNLLRSPNPEGINIYEPAPPTGPTQRPL 80 90 100 110 120 130 130 140 150 160 170 180 pF1KE3 EHGGN--GWAIEKNLTPVPGAPSQTCFVTSFEWCSKRQLVDLVMEGVWQELLDSAQIEIC : :: :: :. . .:. : :.: :::. ::.:.::::. : : CCDS12 ETLGNFRGWYIRTEKLQ----QNQS-------WTVKQQCVDLLAEGLWEELLDDEQPAIT 140 150 160 170 190 200 210 220 230 pF1KE3 VADWWGARENCGCVYQLRVRLLDVYEKEVV-KFSASP-----DPVLQWTERGCRQVSHVF : ::. . .:::.:.: :: . .. :. . ..: : .:. :::::: CCDS12 VMDWFEDSRLDACVYELHVWLLAADRRTVIAQHHVAPRTSGRGPPGRWV-----QVSHVF 180 190 200 210 220 230 240 250 260 270 pF1KE3 TNFGKGIRYVSFEQYGRDVSSWVGHYGALVTHSSVRVRIRLS ..: :.:.. : . ... : . :: ::: :..: CCDS12 RHYGPGVRFIHFLHKAKNRMEPGGLRRTRVTDSSVSVQLRE 240 250 260 270 278 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 08:58:49 2016 done: Sun Nov 6 08:58:49 2016 Total Scan time: 2.510 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]