FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB3073, 132 aa 1>>>pF1KB3073 132 - 132 aa - 132 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.6508+/-0.000415; mu= 14.4819+/- 0.026 mean_var=61.8773+/-12.114, 0's: 0 Z-trim(110.6): 27 B-trim: 0 in 0/50 Lambda= 0.163045 statistics sampled from 18962 (18989) to 18962 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.604), E-opt: 0.2 (0.223), width: 16 Scan time: 4.370 The best scores are: opt bits E(85289) NP_001437 (OMIM: 602965) fatty acid-binding protei ( 132) 860 210.6 5.8e-55 NP_001305968 (OMIM: 602965) fatty acid-binding pro ( 166) 759 187.0 9.8e-48 NP_001305971 (OMIM: 602965) fatty acid-binding pro ( 128) 696 172.0 2.3e-43 NP_004093 (OMIM: 134651) fatty acid-binding protei ( 133) 599 149.2 1.8e-36 XP_011539309 (OMIM: 134651) PREDICTED: fatty acid- ( 126) 549 137.5 5.9e-33 NP_001305970 (OMIM: 602965) fatty acid-binding pro ( 97) 533 133.6 6.6e-32 NP_002668 (OMIM: 170715) myelin P2 protein [Homo s ( 132) 512 128.8 2.6e-30 NP_001433 (OMIM: 600434) fatty acid-binding protei ( 132) 505 127.1 8e-30 NP_001307925 (OMIM: 134651) fatty acid-binding pro ( 144) 482 121.7 3.6e-28 NP_001435 (OMIM: 605168) fatty acid-binding protei ( 135) 397 101.7 3.6e-22 NP_001869 (OMIM: 180231) cellular retinoic acid-bi ( 138) 335 87.2 9e-18 XP_016855832 (OMIM: 180231) PREDICTED: cellular re ( 138) 335 87.2 9e-18 NP_001186652 (OMIM: 180231) cellular retinoic acid ( 138) 335 87.2 9e-18 NP_004369 (OMIM: 180230) cellular retinoic acid-bi ( 137) 326 85.0 3.9e-17 NP_002890 (OMIM: 180260) retinol-binding protein 1 ( 197) 324 84.7 7.1e-17 NP_443192 (OMIM: 608604) retinoid-binding protein ( 134) 307 80.6 8.5e-16 NP_004155 (OMIM: 180280) retinol-binding protein 2 ( 134) 301 79.1 2.3e-15 NP_000125 (OMIM: 134640) fatty acid-binding protei ( 132) 285 75.4 3e-14 NP_001124465 (OMIM: 180260) retinol-binding protei ( 153) 263 70.3 1.2e-12 NP_001124464 (OMIM: 180260) retinol-binding protei ( 157) 260 69.6 2e-12 NP_113679 (OMIM: 611866) retinol-binding protein 5 ( 135) 238 64.3 6.5e-11 XP_016875491 (OMIM: 611866) PREDICTED: retinol-bin ( 126) 195 54.2 6.9e-08 NP_001434 (OMIM: 134650) fatty acid-binding protei ( 127) 161 46.2 1.8e-05 NP_001316383 (OMIM: 611866) retinol-binding protei ( 86) 151 43.7 6.7e-05 NP_001436 (OMIM: 600422) gastrotropin isoform 2 [H ( 128) 125 37.7 0.0063 NP_001124430 (OMIM: 600422) gastrotropin isoform 1 ( 177) 125 37.8 0.0081 NP_001035532 (OMIM: 600422) gastrotropin isoform 1 ( 177) 125 37.8 0.0081 >>NP_001437 (OMIM: 602965) fatty acid-binding protein, b (132 aa) initn: 860 init1: 860 opt: 860 Z-score: 1107.7 bits: 210.6 E(85289): 5.8e-55 Smith-Waterman score: 860; 100.0% identity (100.0% similar) in 132 aa overlap (1-132:1-132) 10 20 30 40 50 60 pF1KB3 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB3 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTLTF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTLTF 70 80 90 100 110 120 130 pF1KB3 GDVVAVRHYEKA :::::::::::: NP_001 GDVVAVRHYEKA 130 >>NP_001305968 (OMIM: 602965) fatty acid-binding protein (166 aa) initn: 759 init1: 759 opt: 759 Z-score: 978.0 bits: 187.0 E(85289): 9.8e-48 Smith-Waterman score: 759; 100.0% identity (100.0% similar) in 116 aa overlap (1-116:1-116) 10 20 30 40 50 60 pF1KB3 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB3 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTLTF :::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMVSND 70 80 90 100 110 120 130 pF1KB3 GDVVAVRHYEKA NP_001 NSPFFLVFFSSPHTSHLLPSSSLLLPFFLLPSFFNNTSLARFFNYM 130 140 150 160 >>NP_001305971 (OMIM: 602965) fatty acid-binding protein (128 aa) initn: 696 init1: 696 opt: 696 Z-score: 899.4 bits: 172.0 E(85289): 2.3e-43 Smith-Waterman score: 696; 100.0% identity (100.0% similar) in 108 aa overlap (25-132:21-128) 10 20 30 40 50 60 pF1KB3 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN :::::::::::::::::::::::::::::::::::: NP_001 MQLKEKDWRSALIKTANQQKGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN 10 20 30 40 50 70 80 90 100 110 120 pF1KB3 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTLTF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTLTF 60 70 80 90 100 110 130 pF1KB3 GDVVAVRHYEKA :::::::::::: NP_001 GDVVAVRHYEKA 120 >>NP_004093 (OMIM: 134651) fatty acid-binding protein, h (133 aa) initn: 599 init1: 599 opt: 599 Z-score: 775.9 bits: 149.2 E(85289): 1.8e-36 Smith-Waterman score: 599; 67.2% identity (90.8% similar) in 131 aa overlap (1-131:1-131) 10 20 30 40 50 60 pF1KB3 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN ::.:: .::::..:.:::.:::.::::::::::...::::.:: ..:: ....: ::::: NP_004 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB3 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTLTF :::::.:: ::::::::::. ::.:.::: ::::.:::::.::..:::. :::...::: NP_004 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILTLTH 70 80 90 100 110 120 130 pF1KB3 GDVVAVRHYEKA : .: .: ::: NP_004 GTAVCTRTYEKEA 130 >>XP_011539309 (OMIM: 134651) PREDICTED: fatty acid-bind (126 aa) initn: 549 init1: 549 opt: 549 Z-score: 712.6 bits: 137.5 E(85289): 5.9e-33 Smith-Waterman score: 549; 68.1% identity (93.1% similar) in 116 aa overlap (1-116:1-116) 10 20 30 40 50 60 pF1KB3 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN ::.:: .::::..:.:::.:::.::::::::::...::::.:: ..:: ....: ::::: XP_011 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB3 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTLTF :::::.:: ::::::::::. ::.:.::: ::::.:::::.::..:::. :::... XP_011 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILMEKL 70 80 90 100 110 120 130 pF1KB3 GDVVAVRHYEKA XP_011 QLRNVK >>NP_001305970 (OMIM: 602965) fatty acid-binding protein (97 aa) initn: 533 init1: 533 opt: 533 Z-score: 693.8 bits: 133.6 E(85289): 6.6e-32 Smith-Waterman score: 533; 100.0% identity (100.0% similar) in 82 aa overlap (1-82:1-82) 10 20 30 40 50 60 pF1KB3 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB3 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTLTF :::::::::::::::::::::: NP_001 TEISFQLGEEFDETTADDRNCKVRNCFFFRVGMGRGE 70 80 90 >>NP_002668 (OMIM: 170715) myelin P2 protein [Homo sapie (132 aa) initn: 512 init1: 512 opt: 512 Z-score: 665.3 bits: 128.8 E(85289): 2.6e-30 Smith-Waterman score: 512; 59.5% identity (85.5% similar) in 131 aa overlap (1-131:1-131) 10 20 30 40 50 60 pF1KB3 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN : . : .::::..:.:::.::::::::.:::..::..:::::::..:: ..::: ::::: NP_002 MSNKFLGTWKLVSSENFDDYMKALGVGLATRKLGNLAKPTVIISKKGDIITIRTESTFKN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB3 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTLTF :::::.::.::.:::::.:. ::.:.:. .: ..:.::::::.. :.. .:::: . NP_002 TEISFKLGQEFEETTADNRKTKSIVTLQRGSLNQVQRWDGKETTIKRKLVNGKMVAECKM 70 80 90 100 110 120 130 pF1KB3 GDVVAVRHYEKA :: .: ::: NP_002 KGVVCTRIYEKV 130 >>NP_001433 (OMIM: 600434) fatty acid-binding protein, a (132 aa) initn: 515 init1: 497 opt: 505 Z-score: 656.4 bits: 127.1 E(85289): 8e-30 Smith-Waterman score: 505; 56.8% identity (85.6% similar) in 132 aa overlap (1-132:1-132) 10 20 30 40 50 60 pF1KB3 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN : .:: .::::..:.:::.::: .:::::::.:....::..::: .:: ..:.. ::::: NP_001 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDVITIKSESTFKN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB3 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTLTF ::::: ::.::::.:::::. ::...::: :::.:::::: :.. :. .: :.:. .. NP_001 TEISFILGQEFDEVTADDRKVKSTITLDGGVLVHVQKWDGKSTTIKRKREDDKLVVECVM 70 80 90 100 110 120 130 pF1KB3 GDVVAVRHYEKA :...: ::.: NP_001 KGVTSTRVYERA 130 >>NP_001307925 (OMIM: 134651) fatty acid-binding protein (144 aa) initn: 585 init1: 482 opt: 482 Z-score: 626.7 bits: 121.7 E(85289): 3.6e-28 Smith-Waterman score: 567; 62.0% identity (83.8% similar) in 142 aa overlap (1-131:1-142) 10 20 30 40 pF1KB3 MVEAFCATWKLTNSQNFDEYMKAL-----------GVGFATRQVGNVTKPTVIISQEGDK ::.:: .::::..:.:::.:::.: :::::::::...::::.:: ..:: NP_001 MVDAFLGTWKLVDSKNFDDYMKSLAHILITFPLPSGVGFATRQVASMTKPTTIIEKNGDI 10 20 30 40 50 60 50 60 70 80 90 100 pF1KB3 VVIRTLSTFKNTEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREI ....: ::::::::::.:: ::::::::::. ::.:.::: ::::.:::::.::..:::. NP_001 LTLKTHSTFKNTEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVREL 70 80 90 100 110 120 110 120 130 pF1KB3 KDGKMVMTLTFGDVVAVRHYEKA :::...::: : .: .: ::: NP_001 IDGKLILTLTHGTAVCTRTYEKEA 130 140 >>NP_001435 (OMIM: 605168) fatty acid-binding protein, e (135 aa) initn: 397 init1: 397 opt: 397 Z-score: 519.0 bits: 101.7 E(85289): 3.6e-22 Smith-Waterman score: 397; 45.4% identity (80.8% similar) in 130 aa overlap (2-131:4-133) 10 20 30 40 50 pF1KB3 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTF :. . . :.:..:..:::::: ::::.: :..: ..:: ::. .: ...:.: ::. NP_001 MATVQQLEGRWRLVDSKGFDEYMKELGVGIALRKMGAMAKPDCIITCDGKNLTIKTESTL 10 20 30 40 50 60 60 70 80 90 100 110 pF1KB3 KNTEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTL :.:..: :::.:.::::: :. ..: .. ::. :.:::::....:..::::.:. NP_001 KTTQFSCTLGEKFEETTADGRKTQTVCNFTDGALVQHQEWDGKESTITRKLKDGKLVVEC 70 80 90 100 110 120 120 130 pF1KB3 TFGDVVAVRHYEKA ....:. .: ::: NP_001 VMNNVTCTRIYEKVE 130 132 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 01:42:55 2016 done: Mon Nov 7 01:42:56 2016 Total Scan time: 4.370 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]