FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB3073, 132 aa 1>>>pF1KB3073 132 - 132 aa - 132 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.8403+/-0.000931; mu= 13.1811+/- 0.056 mean_var=56.8482+/-11.291, 0's: 0 Z-trim(103.5): 19 B-trim: 0 in 0/51 Lambda= 0.170105 statistics sampled from 7442 (7461) to 7442 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.617), E-opt: 0.2 (0.229), width: 16 Scan time: 1.530 The best scores are: opt bits E(32554) CCDS5127.1 FABP7 gene_id:2173|Hs108|chr6 ( 132) 860 219.1 6.4e-58 CCDS83121.1 FABP7 gene_id:2173|Hs108|chr6 ( 166) 759 194.3 2.3e-50 CCDS342.1 FABP3 gene_id:2170|Hs108|chr1 ( 133) 599 155.0 1.2e-38 CCDS6229.1 PMP2 gene_id:5375|Hs108|chr8 ( 132) 512 133.7 3.3e-32 CCDS6230.1 FABP4 gene_id:2167|Hs108|chr8 ( 132) 505 131.9 1.1e-31 CCDS47882.1 FABP12 gene_id:646486|Hs108|chr8 ( 140) 435 114.8 1.7e-26 CCDS6228.1 FABP5 gene_id:2171|Hs108|chr8 ( 135) 397 105.4 1.1e-23 CCDS1152.1 CRABP2 gene_id:1382|Hs108|chr1 ( 138) 335 90.2 4.1e-19 CCDS10301.1 CRABP1 gene_id:1381|Hs108|chr15 ( 137) 326 88.0 1.9e-18 CCDS3110.2 RBP1 gene_id:5947|Hs108|chr3 ( 197) 324 87.6 3.5e-18 CCDS109.1 RBP7 gene_id:116362|Hs108|chr1 ( 134) 307 83.4 4.7e-17 CCDS3109.1 RBP2 gene_id:5948|Hs108|chr3 ( 134) 301 81.9 1.3e-16 CCDS3712.1 FABP2 gene_id:2169|Hs108|chr4 ( 132) 285 78.0 1.9e-15 CCDS46925.1 RBP1 gene_id:5947|Hs108|chr3 ( 153) 263 72.6 9.2e-14 CCDS46926.1 RBP1 gene_id:5947|Hs108|chr3 ( 157) 260 71.9 1.6e-13 CCDS8574.1 RBP5 gene_id:83758|Hs108|chr12 ( 135) 238 66.4 5.9e-12 >>CCDS5127.1 FABP7 gene_id:2173|Hs108|chr6 (132 aa) initn: 860 init1: 860 opt: 860 Z-score: 1153.3 bits: 219.1 E(32554): 6.4e-58 Smith-Waterman score: 860; 100.0% identity (100.0% similar) in 132 aa overlap (1-132:1-132) 10 20 30 40 50 60 pF1KB3 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS51 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB3 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTLTF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS51 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTLTF 70 80 90 100 110 120 130 pF1KB3 GDVVAVRHYEKA :::::::::::: CCDS51 GDVVAVRHYEKA 130 >>CCDS83121.1 FABP7 gene_id:2173|Hs108|chr6 (166 aa) initn: 759 init1: 759 opt: 759 Z-score: 1017.8 bits: 194.3 E(32554): 2.3e-50 Smith-Waterman score: 759; 100.0% identity (100.0% similar) in 116 aa overlap (1-116:1-116) 10 20 30 40 50 60 pF1KB3 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS83 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB3 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTLTF :::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS83 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMVSND 70 80 90 100 110 120 130 pF1KB3 GDVVAVRHYEKA CCDS83 NSPFFLVFFSSPHTSHLLPSSSLLLPFFLLPSFFNNTSLARFFNYM 130 140 150 160 >>CCDS342.1 FABP3 gene_id:2170|Hs108|chr1 (133 aa) initn: 599 init1: 599 opt: 599 Z-score: 807.1 bits: 155.0 E(32554): 1.2e-38 Smith-Waterman score: 599; 67.2% identity (90.8% similar) in 131 aa overlap (1-131:1-131) 10 20 30 40 50 60 pF1KB3 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN ::.:: .::::..:.:::.:::.::::::::::...::::.:: ..:: ....: ::::: CCDS34 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB3 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTLTF :::::.:: ::::::::::. ::.:.::: ::::.:::::.::..:::. :::...::: CCDS34 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILTLTH 70 80 90 100 110 120 130 pF1KB3 GDVVAVRHYEKA : .: .: ::: CCDS34 GTAVCTRTYEKEA 130 >>CCDS6229.1 PMP2 gene_id:5375|Hs108|chr8 (132 aa) initn: 512 init1: 512 opt: 512 Z-score: 691.7 bits: 133.7 E(32554): 3.3e-32 Smith-Waterman score: 512; 59.5% identity (85.5% similar) in 131 aa overlap (1-131:1-131) 10 20 30 40 50 60 pF1KB3 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN : . : .::::..:.:::.::::::::.:::..::..:::::::..:: ..::: ::::: CCDS62 MSNKFLGTWKLVSSENFDDYMKALGVGLATRKLGNLAKPTVIISKKGDIITIRTESTFKN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB3 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTLTF :::::.::.::.:::::.:. ::.:.:. .: ..:.::::::.. :.. .:::: . CCDS62 TEISFKLGQEFEETTADNRKTKSIVTLQRGSLNQVQRWDGKETTIKRKLVNGKMVAECKM 70 80 90 100 110 120 130 pF1KB3 GDVVAVRHYEKA :: .: ::: CCDS62 KGVVCTRIYEKV 130 >>CCDS6230.1 FABP4 gene_id:2167|Hs108|chr8 (132 aa) initn: 515 init1: 497 opt: 505 Z-score: 682.4 bits: 131.9 E(32554): 1.1e-31 Smith-Waterman score: 505; 56.8% identity (85.6% similar) in 132 aa overlap (1-132:1-132) 10 20 30 40 50 60 pF1KB3 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN : .:: .::::..:.:::.::: .:::::::.:....::..::: .:: ..:.. ::::: CCDS62 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDVITIKSESTFKN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB3 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTLTF ::::: ::.::::.:::::. ::...::: :::.:::::: :.. :. .: :.:. .. CCDS62 TEISFILGQEFDEVTADDRKVKSTITLDGGVLVHVQKWDGKSTTIKRKREDDKLVVECVM 70 80 90 100 110 120 130 pF1KB3 GDVVAVRHYEKA :...: ::.: CCDS62 KGVTSTRVYERA 130 >>CCDS47882.1 FABP12 gene_id:646486|Hs108|chr8 (140 aa) initn: 435 init1: 435 opt: 435 Z-score: 589.2 bits: 114.8 E(32554): 1.7e-26 Smith-Waterman score: 435; 48.9% identity (78.6% similar) in 131 aa overlap (1-131:1-131) 10 20 30 40 50 60 pF1KB3 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN :.. . .::: . .: ..::: ::.: :.:..: ..:::: :: .:: ..:.: : ::: CCDS47 MIDQLQGTWKSISCENSEDYMKELGIGRASRKLGRLAKPTVTISTDGDVITIKTKSIFKN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB3 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTLTF .::::.:::::.: : .. :: :.:: ..:...: ::::::...:.. :::::. : CCDS47 NEISFKLGEEFEEITPGGHKTKSKVTLDKESLIQVQDWDGKETTITRKLVDGKMVVESTV 70 80 90 100 110 120 130 pF1KB3 GDVVAVRHYEKA ..:. .: ::: CCDS47 NSVICTRTYEKVSSNSVSNS 130 140 >>CCDS6228.1 FABP5 gene_id:2171|Hs108|chr8 (135 aa) initn: 397 init1: 397 opt: 397 Z-score: 539.1 bits: 105.4 E(32554): 1.1e-23 Smith-Waterman score: 397; 45.4% identity (80.8% similar) in 130 aa overlap (2-131:4-133) 10 20 30 40 50 pF1KB3 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTF :. . . :.:..:..:::::: ::::.: :..: ..:: ::. .: ...:.: ::. CCDS62 MATVQQLEGRWRLVDSKGFDEYMKELGVGIALRKMGAMAKPDCIITCDGKNLTIKTESTL 10 20 30 40 50 60 60 70 80 90 100 110 pF1KB3 KNTEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTL :.:..: :::.:.::::: :. ..: .. ::. :.:::::....:..::::.:. CCDS62 KTTQFSCTLGEKFEETTADGRKTQTVCNFTDGALVQHQEWDGKESTITRKLKDGKLVVEC 70 80 90 100 110 120 120 130 pF1KB3 TFGDVVAVRHYEKA ....:. .: ::: CCDS62 VMNNVTCTRIYEKVE 130 >>CCDS1152.1 CRABP2 gene_id:1382|Hs108|chr1 (138 aa) initn: 302 init1: 179 opt: 335 Z-score: 456.7 bits: 90.2 E(32554): 4.1e-19 Smith-Waterman score: 335; 43.2% identity (75.0% similar) in 132 aa overlap (5-129:4-135) 10 20 30 40 50 pF1KB3 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQ--VGNVTKPTVIISQEGDKVVIRTLSTF : ..::. :.::.: .:.:::. :. :. ..::.: :.:::: :.: .: CCDS11 MPNFSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTV 10 20 30 40 50 60 70 80 90 100 110 pF1KB3 KNTEISFQLGEEFDETTADDRNCKSVVSLDGD-KLVHIQKW---DGKETNFVREI-KDGK ..:::.:..::::.: :.: : :::.:. ... :.: :: .: .:...::. .::. CCDS11 RTTEINFKVGEEFEEQTVDGRPCKSLVKWESENKMVCEQKLLKGEGPKTSWTRELTNDGE 60 70 80 90 100 110 120 130 pF1KB3 MVMTLTFGDVVAVRHYEKA ...:.: ::: .: : CCDS11 LILTMTADDVVCTRVYVRE 120 130 >>CCDS10301.1 CRABP1 gene_id:1381|Hs108|chr15 (137 aa) initn: 349 init1: 173 opt: 326 Z-score: 444.8 bits: 88.0 E(32554): 1.9e-18 Smith-Waterman score: 326; 38.9% identity (72.5% similar) in 131 aa overlap (5-129:4-134) 10 20 30 40 50 pF1KB3 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVG--NVTKPTVIISQEGDKVVIRTLSTF : .:::. .:.:::: .:::::. :.:. ..:: : : :.::. :.: .: CCDS10 MPNFAGTWKMRSSENFDELLKALGVNAMLRKVAVAAASKPHVEIRQDGDQFYIKTSTTV 10 20 30 40 50 60 70 80 90 100 110 pF1KB3 KNTEISFQLGEEFDETTADDRNCKSVVSLDGDKLVH----IQKWDGKETNFVREIKDGKM ..:::.:..:: :.: :.: :.:.:... .... .: . . :: .: ..::. . .. CCDS10 RTTEINFKVGEGFEEETVDGRKCRSLATWENENKIHCTQTLLEGDGPKTYWTRELANDEL 60 70 80 90 100 110 120 130 pF1KB3 VMTLTFGDVVAVRHYEKA ..:. ::: .: : CCDS10 ILTFGADDVVCTRIYVRE 120 130 >>CCDS3110.2 RBP1 gene_id:5947|Hs108|chr3 (197 aa) initn: 271 init1: 231 opt: 324 Z-score: 439.8 bits: 87.6 E(32554): 3.5e-18 Smith-Waterman score: 324; 39.5% identity (70.5% similar) in 129 aa overlap (5-131:67-195) 10 20 30 pF1KB3 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVG : . ::. ..::.::..:: :. : :... CCDS31 STGSRCPGSLQPSRPLVANWLQSLPEMPVDFTGYWKMLVNENFEEYLRALDVNVALRKIA 40 50 60 70 80 90 40 50 60 70 80 90 pF1KB3 NVTKPTVIISQEGDKVVIRTLSTFKNTEISFQLGEEFDE--TTADDRNCKSVVSLDGDKL :. :: : :.::...:::::::.: ..::.:.::.: : :::.: ..:: ::::: CCDS31 NLLKPDKEIVQDGDHMIIRTLSTFRNYIMDFQVGKEFEEDLTGIDDRKCMTTVSWDGDKL 100 110 120 130 140 150 100 110 120 130 pF1KB3 VHIQKWDGKETNFVREIKDGKMVMTLTFGDVVAVRHYEKA .:: . . .... :. .. . . :: . ..: CCDS31 QCVQKGEKEGRGWTQWIEGDELHLEMRVEGVVCKQVFKKVQ 160 170 180 190 132 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 01:42:55 2016 done: Mon Nov 7 01:42:55 2016 Total Scan time: 1.530 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]