FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5507, 414 aa
  1>>>pF1KE5507 414 - 414 aa - 414 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0257+/-0.000384; mu= 18.8003+/- 0.024
 mean_var=65.1778+/-13.087, 0's: 0 Z-trim(112.5): 21  B-trim: 22 in 1/53
 Lambda= 0.158864
 statistics sampled from 21463 (21472) to 21463 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.621), E-opt: 0.2 (0.252), width:  16
 Scan time:  8.200

The best scores are:                                      opt bits E(85289)
NP_060277 (OMIM: 610107) probable tRNA N6-adenosin ( 335)  279 72.8 1.4e-12


>>NP_060277 (OMIM: 610107) probable tRNA N6-adenosine th  (335 aa)
 initn: 304 init1: 114 opt: 279  Z-score: 346.9  bits: 72.8 E(85289): 1.4e-12
Smith-Waterman score: 416; 30.0% identity (57.9% similar) in 337 aa overlap (39-374:4-310)

       10        20        30        40        50        60        
pF1KE5 GVFFKPSKRKVYEFLRSFNFHPGTLFLHKIVLGIETSCDDTAAAVVDETGNVLGEAIHSQ
                                     :::.: : .  ...:: . :.::  :   .
NP_060                            MPAVLGFEGSANKIGVGVVRD-GKVL--ANPRR
                                          10        20           30

       70        80        90       100       110       120        
pF1KE5 TEVHLKTGGIVPPAAQQLHRENIQRIVQEALSASGVSPSDLSAIATTIKPGLALSLGVGL
       : :     :..:  . . ::  :  ..::::. ::.. .:.. :: :  ::..  : :..
NP_060 TYVTPPGTGFLPGDTARHHRAVILDLLQEALTESGLTSQDIDCIAYTKGPGMGAPL-VSV
               40        50        60        70        80          

      130        140       150       160       170       180       
pF1KE5 SFSLQLVGQL-KKPFIPIHHMEAHALTIRLTNKVEFPFLVLLISGGHCLLALVQGVSDFL
       .   . :.:: .::.. ..:  .:    :: . .  :  :: .:::.  . .. .   . 
NP_060 AVVARTVAQLWNKPLVGVNHCIGHIEMGRLITGATSP-TVLYVSGGNTQV-IAYSEHRYR
      90       100       110       120        130        140       

       190       200       210       220       230       240       
pF1KE5 LLGKSLDIAPGDMLDKVARRLSLIKHPECSTMSGGKAIEHLAKQGNRFHFDIKPPLHHAK
       ..:...::: :. ::. :: :.. . :     : :  ::..::.:...   .. : . .:
NP_060 IFGETIDIAVGNCLDRFARVLKISNDP-----SPGYNIEQMAKRGKKL---VELP-YTVK
       150       160       170            180       190            

       250       260       270       280       290       300       
pF1KE5 NCDFSFTGLQHVTDKIIMKKEKEEGIEKGQILSSAADIAATVQHTMACHLVKRTHRAILF
       . : ::.:.    . .  .      .  :.   .  :.  ..:.:.   ::. :.::.  
NP_060 GMDVSFSGILSFIEDVAHRM-----LATGE--CTPEDLCFSLQETVFAMLVEITERAMAH
      200       210            220         230       240       250 

       310       320       330       340       350       360       
pF1KE5 CKQRDLLPQNNAVLVASGGVASNFYIRRALEILTNATQCTLLCPPPRLCTDNGIMIAWNG
       : ...      :..:  :::. :  ... .  . .     :.    :.: ::: :::  :
NP_060 CGSQE------ALIV--GGVGCNVRLQEMMATMCQERGARLFATDERFCIDNGAMIAQAG
                   260         270       280       290       300   

       370       380       390       400       410    
pF1KE5 IERLRAGLGILHDIEGIRYEPKCPLGVDISKEVGEASIKVPQLKMEI
        : .:::                                        
NP_060 WEMFRAGHRTPLSDSGVTQRYRTDEVEVTWRD               
           310       320       330                    




414 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 01:19:27 2016 done: Tue Nov  8 01:19:28 2016
 Total Scan time:  8.200 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]