FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1347, 379 aa 1>>>pF1KE1347 379 - 379 aa - 379 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.0142+/-0.000346; mu= 9.5507+/- 0.022 mean_var=110.4194+/-22.979, 0's: 0 Z-trim(118.0): 10 B-trim: 1577 in 2/55 Lambda= 0.122054 statistics sampled from 30449 (30459) to 30449 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.715), E-opt: 0.2 (0.357), width: 16 Scan time: 10.020 The best scores are: opt bits E(85289) NP_919410 (OMIM: 605392) FGFR1 oncogene partner is ( 379) 2381 429.7 5.5e-120 NP_008976 (OMIM: 605392) FGFR1 oncogene partner is ( 399) 1343 246.9 6e-65 NP_001265619 (OMIM: 605392) FGFR1 oncogene partner ( 351) 1170 216.4 7.9e-56 >>NP_919410 (OMIM: 605392) FGFR1 oncogene partner isofor (379 aa) initn: 2381 init1: 2381 opt: 2381 Z-score: 2275.2 bits: 429.7 E(85289): 5.5e-120 Smith-Waterman score: 2381; 99.5% identity (100.0% similar) in 379 aa overlap (1-379:1-379) 10 20 30 40 50 60 pF1KE1 MAATAAAVVAEEDTELRDLLVQTLENSGVLNRIKAELRAAVFLALEEQEKVENKTPLVNE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_919 MAATAAAVVAEEDTELRDLLVQTLENSGVLNRIKAELRAAVFLALEEQEKVENKTPLVNE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 SLRKFLNTKDGRLVASLVAEFLQFFNLDFTLAVFQPETSTLQGLEGRENLARDLGIIEAE ::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_919 SLKKFLNTKDGRLVASLVAEFLQFFNLDFTLAVFQPETSTLQGLEGRENLARDLGIIEAE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 GTVGGPLLLEVIRRCQQKEKGPTTGEGALDLSDVHSPPKSPEGKTSAQTTPSKKANDEAN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_919 GTVGGPLLLEVIRRCQQKEKGPTTGEGALDLSDVHSPPKSPEGKTSAQTTPSKKANDEAN 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 QSDTSVSLSEPKSKSSLHLLSHETKIGSFLSNRTLDGKDKAGLCPDEDDMEGDSFFDDPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_919 QSDTSVSLSEPKSKSSLHLLSHETKIGSFLSNRTLDGKDKAGLCPDEDDMEGDSFFDDPI 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 PKPEKTYGLRNEPRKQAGSLASLSDAPPLKSGLSSLAGAPSLKDSESKRGNTVLKDLKLI ::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::: NP_919 PKPEKTYGLRKEPRKQAGSLASLSDAPPLKSGLSSLAGAPSLKDSESKRGNTVLKDLKLI 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 SDKIGSLGLGTGEDDDYVDDFNSTSHRSEKSEISIGEEIEEDLSVEIDDINTSDKLDDLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_919 SDKIGSLGLGTGEDDDYVDDFNSTSHRSEKSEISIGEEIEEDLSVEIDDINTSDKLDDLT 310 320 330 340 350 360 370 pF1KE1 QDLTVSQLSDVADYLEDVA ::::::::::::::::::: NP_919 QDLTVSQLSDVADYLEDVA 370 >>NP_008976 (OMIM: 605392) FGFR1 oncogene partner isofor (399 aa) initn: 1335 init1: 1335 opt: 1343 Z-score: 1287.0 bits: 246.9 E(85289): 6e-65 Smith-Waterman score: 2331; 94.5% identity (95.0% similar) in 399 aa overlap (1-379:1-399) 10 20 30 40 50 60 pF1KE1 MAATAAAVVAEEDTELRDLLVQTLENSGVLNRIKAELRAAVFLALEEQEKVENKTPLVNE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_008 MAATAAAVVAEEDTELRDLLVQTLENSGVLNRIKAELRAAVFLALEEQEKVENKTPLVNE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 SLRKFLNTKDGRLVASLVAEFLQFFNLDFTLAVFQPETSTLQGLEGRENLARDLGIIEAE ::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_008 SLKKFLNTKDGRLVASLVAEFLQFFNLDFTLAVFQPETSTLQGLEGRENLARDLGIIEAE 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 GTVGGPLLLEVIRRCQQKEKGPTTGEGALDLSDVHSPPKSPEGKTSAQTTPSK------- ::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_008 GTVGGPLLLEVIRRCQQKEKGPTTGEGALDLSDVHSPPKSPEGKTSAQTTPSKIPRYKGQ 130 140 150 160 170 180 180 190 200 210 220 pF1KE1 -------------KANDEANQSDTSVSLSEPKSKSSLHLLSHETKIGSFLSNRTLDGKDK ::::::::::::::::::::::::::::::::::::::::::::::: NP_008 GKKKTSGQKAGDKKANDEANQSDTSVSLSEPKSKSSLHLLSHETKIGSFLSNRTLDGKDK 190 200 210 220 230 240 230 240 250 260 270 280 pF1KE1 AGLCPDEDDMEGDSFFDDPIPKPEKTYGLRNEPRKQAGSLASLSDAPPLKSGLSSLAGAP ::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::: NP_008 AGLCPDEDDMEGDSFFDDPIPKPEKTYGLRKEPRKQAGSLASLSDAPPLKSGLSSLAGAP 250 260 270 280 290 300 290 300 310 320 330 340 pF1KE1 SLKDSESKRGNTVLKDLKLISDKIGSLGLGTGEDDDYVDDFNSTSHRSEKSEISIGEEIE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_008 SLKDSESKRGNTVLKDLKLISDKIGSLGLGTGEDDDYVDDFNSTSHRSEKSEISIGEEIE 310 320 330 340 350 360 350 360 370 pF1KE1 EDLSVEIDDINTSDKLDDLTQDLTVSQLSDVADYLEDVA ::::::::::::::::::::::::::::::::::::::: NP_008 EDLSVEIDDINTSDKLDDLTQDLTVSQLSDVADYLEDVA 370 380 390 >>NP_001265619 (OMIM: 605392) FGFR1 oncogene partner iso (351 aa) initn: 1168 init1: 1168 opt: 1170 Z-score: 1123.2 bits: 216.4 E(85289): 7.9e-56 Smith-Waterman score: 1995; 88.0% identity (90.7% similar) in 376 aa overlap (1-373:1-349) 10 20 30 40 50 60 pF1KE1 MAATAAAVVAEEDTELRDLLVQTLENSGVLNRIKAELRAAVFLALEEQEKVENKTPLVNE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MAATAAAVVAEEDTELRDLLVQTLENSGVLNRIKAELRAAVFLALEEQEKVENKTPLVNE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 SLRKFLNTKDGRLVASLVAEFLQFFNLDFTLAVFQPETSTLQGLEGRENLARDLGIIEAE ::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SLKKFLNTKDGRLVASLVAEFLQFFNLDFTLAVFQPETSTLQGLEGRENLARDLGIIEAE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 GTVGGPLLLEVIRRCQQKEKGPTTGEGALDLSDVHSPPKSPEGKTSAQTTPSKKANDEAN :::::::::::::::::::::::::: ::::::: NP_001 GTVGGPLLLEVIRRCQQKEKGPTTGE---------------------------KANDEAN 130 140 150 190 200 210 220 230 240 pF1KE1 QSDTSVSLSEPKSKSSLHLLSHETKIGSFLSNRTLDGKDKAGLCPDEDDMEGDSFFDDPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QSDTSVSLSEPKSKSSLHLLSHETKIGSFLSNRTLDGKDKAGLCPDEDDMEGDSFFDDPI 160 170 180 190 200 210 250 260 270 280 290 300 pF1KE1 PKPEKTYGLRNEPRKQAGSLASLSDAPPLKSGLSSLAGAPSLKDSESKRGNTVLKDLKLI ::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PKPEKTYGLRKEPRKQAGSLASLSDAPPLKSGLSSLAGAPSLKDSESKRGNTVLKDLKLI 220 230 240 250 260 270 310 320 330 340 350 pF1KE1 SDKIGSLGLGTGEDDDYVDDFNSTSHRSEKSEISIGEEIEEDLSVEIDDINTSDK-LDDL ::::::::::::::::::::::::::::::::::::::::::::::::::::::: . .: NP_001 SDKIGSLGLGTGEDDDYVDDFNSTSHRSEKSEISIGEEIEEDLSVEIDDINTSDKTITQL 280 290 300 310 320 330 360 370 pF1KE1 TQDLTVSQL--SDVADYLEDVA :... : ...:: NP_001 ECLLSIGALHFKNTADIF 340 350 379 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 01:46:57 2016 done: Mon Nov 7 01:46:58 2016 Total Scan time: 10.020 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]