FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4392, 415 aa 1>>>pF1KE4392 415 - 415 aa - 415 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2663+/-0.000343; mu= 17.1144+/- 0.021 mean_var=63.2208+/-12.572, 0's: 0 Z-trim(114.3): 16 B-trim: 0 in 0/53 Lambda= 0.161304 statistics sampled from 24062 (24076) to 24062 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.653), E-opt: 0.2 (0.282), width: 16 Scan time: 7.410 The best scores are: opt bits E(85289) NP_000425 (OMIM: 256550,608272) sialidase-1 precur ( 415) 2857 673.5 2.6e-193 >>NP_000425 (OMIM: 256550,608272) sialidase-1 precursor (415 aa) initn: 2857 init1: 2857 opt: 2857 Z-score: 3591.6 bits: 673.5 E(85289): 2.6e-193 Smith-Waterman score: 2857; 100.0% identity (100.0% similar) in 415 aa overlap (1-415:1-415) 10 20 30 40 50 60 pF1KE4 MTGERPSTALPDRRWGPRILGFWGGCRVWVFAAIFLLLSLAASWSKAENDFGLVQPLVTM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 MTGERPSTALPDRRWGPRILGFWGGCRVWVFAAIFLLLSLAASWSKAENDFGLVQPLVTM 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 EQLLWVSGRQIGSVDTFRIPLITATPRGTLLAFAEARKMSSSDEGAKFIALRRSMDQGST :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 EQLLWVSGRQIGSVDTFRIPLITATPRGTLLAFAEARKMSSSDEGAKFIALRRSMDQGST 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 WSPTAFIVNDGDVPDGLNLGAVVSDVETGVVFLFYSLCAHKAGCQVASTMLVWSKDDGVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 WSPTAFIVNDGDVPDGLNLGAVVSDVETGVVFLFYSLCAHKAGCQVASTMLVWSKDDGVS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 WSTPRNLSLDIGTEVFAPGPGSGIQKQREPRKGRLIVCGHGTLERDGVFCLLSDDHGASW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 WSTPRNLSLDIGTEVFAPGPGSGIQKQREPRKGRLIVCGHGTLERDGVFCLLSDDHGASW 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 RYGSGVSGIPYGQPKQENDFNPDECQPYELPDGSVVINARNQNNYHCHCRIVLRSYDACD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 RYGSGVSGIPYGQPKQENDFNPDECQPYELPDGSVVINARNQNNYHCHCRIVLRSYDACD 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE4 TLRPRDVTFDPELVDPVVAAGAVVTSSGIVFFSNPAHPEFRVNLTLRWSFSNGTSWRKET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 TLRPRDVTFDPELVDPVVAAGAVVTSSGIVFFSNPAHPEFRVNLTLRWSFSNGTSWRKET 310 320 330 340 350 360 370 380 390 400 410 pF1KE4 VQLWPGPSGYSSLATLEGSMDGEEQAPQLYVLYEKGRNHYTESISVAKISVYGTL ::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 VQLWPGPSGYSSLATLEGSMDGEEQAPQLYVLYEKGRNHYTESISVAKISVYGTL 370 380 390 400 410 415 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 01:17:44 2016 done: Tue Nov 8 01:17:45 2016 Total Scan time: 7.410 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]