FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5306, 312 aa 1>>>pF1KE5306 312 - 312 aa - 312 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.9624+/-0.000796; mu= 1.6212+/- 0.048 mean_var=218.2302+/-43.545, 0's: 0 Z-trim(116.4): 3 B-trim: 65 in 1/54 Lambda= 0.086819 statistics sampled from 16976 (16979) to 16976 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.816), E-opt: 0.2 (0.522), width: 16 Scan time: 2.850 The best scores are: opt bits E(32554) CCDS10426.1 RPUSD1 gene_id:113000|Hs108|chr16 ( 312) 2195 286.6 1.7e-77 CCDS81923.1 RPUSD1 gene_id:113000|Hs108|chr16 ( 183) 1327 177.7 5.8e-45 CCDS81924.1 RPUSD1 gene_id:113000|Hs108|chr16 ( 131) 705 99.7 1.3e-21 >>CCDS10426.1 RPUSD1 gene_id:113000|Hs108|chr16 (312 aa) initn: 2195 init1: 2195 opt: 2195 Z-score: 1505.0 bits: 286.6 E(32554): 1.7e-77 Smith-Waterman score: 2195; 100.0% identity (100.0% similar) in 312 aa overlap (1-312:1-312) 10 20 30 40 50 60 pF1KE5 MEPGSVENLSIVYRSRDFLVVNKHWDVRIDSKAWRETLTLQKQLRYRFPELADPDTCYGF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 MEPGSVENLSIVYRSRDFLVVNKHWDVRIDSKAWRETLTLQKQLRYRFPELADPDTCYGF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 RFCHQLDFSTSGALCVALNKAAAGSAYRCFKERRVTKAYLALLRGHIQESRVTISHAIGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 RFCHQLDFSTSGALCVALNKAAAGSAYRCFKERRVTKAYLALLRGHIQESRVTISHAIGR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 NSTEGRAHTMCIEGSQGCENPKPSLTDLVVLEHGLYAGDPVSKVLLKPLTGRTHQLRVHC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 NSTEGRAHTMCIEGSQGCENPKPSLTDLVVLEHGLYAGDPVSKVLLKPLTGRTHQLRVHC 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 SALGHPVVGDLTYGEVSGREDRPFRMMLHAFYLRIPTDTECVEVCTPDPFLPSLDACWSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 SALGHPVVGDLTYGEVSGREDRPFRMMLHAFYLRIPTDTECVEVCTPDPFLPSLDACWSP 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 HTLLQSLDQLVQALRATPDPDPEDRGPRPGSPSALLPGPGRPPPPPTKPPETEAQRGPCL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 HTLLQSLDQLVQALRATPDPDPEDRGPRPGSPSALLPGPGRPPPPPTKPPETEAQRGPCL 250 260 270 280 290 300 310 pF1KE5 QWLSEWTLEPDS :::::::::::: CCDS10 QWLSEWTLEPDS 310 >>CCDS81923.1 RPUSD1 gene_id:113000|Hs108|chr16 (183 aa) initn: 1327 init1: 1327 opt: 1327 Z-score: 920.7 bits: 177.7 E(32554): 5.8e-45 Smith-Waterman score: 1327; 100.0% identity (100.0% similar) in 183 aa overlap (130-312:1-183) 100 110 120 130 140 150 pF1KE5 LALLRGHIQESRVTISHAIGRNSTEGRAHTMCIEGSQGCENPKPSLTDLVVLEHGLYAGD :::::::::::::::::::::::::::::: CCDS81 MCIEGSQGCENPKPSLTDLVVLEHGLYAGD 10 20 30 160 170 180 190 200 210 pF1KE5 PVSKVLLKPLTGRTHQLRVHCSALGHPVVGDLTYGEVSGREDRPFRMMLHAFYLRIPTDT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 PVSKVLLKPLTGRTHQLRVHCSALGHPVVGDLTYGEVSGREDRPFRMMLHAFYLRIPTDT 40 50 60 70 80 90 220 230 240 250 260 270 pF1KE5 ECVEVCTPDPFLPSLDACWSPHTLLQSLDQLVQALRATPDPDPEDRGPRPGSPSALLPGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 ECVEVCTPDPFLPSLDACWSPHTLLQSLDQLVQALRATPDPDPEDRGPRPGSPSALLPGP 100 110 120 130 140 150 280 290 300 310 pF1KE5 GRPPPPPTKPPETEAQRGPCLQWLSEWTLEPDS ::::::::::::::::::::::::::::::::: CCDS81 GRPPPPPTKPPETEAQRGPCLQWLSEWTLEPDS 160 170 180 >>CCDS81924.1 RPUSD1 gene_id:113000|Hs108|chr16 (131 aa) initn: 696 init1: 696 opt: 705 Z-score: 501.6 bits: 99.7 E(32554): 1.3e-21 Smith-Waterman score: 705; 92.1% identity (96.5% similar) in 114 aa overlap (1-113:1-114) 10 20 30 40 50 60 pF1KE5 MEPGSVENLSIVYRSRDFLVVNKHWDVRIDSKAWRETLTLQKQLRYRFPELADPDTCYGF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 MEPGSVENLSIVYRSRDFLVVNKHWDVRIDSKAWRETLTLQKQLRYRFPELADPDTCYGF 10 20 30 40 50 60 70 80 90 100 110 pF1KE5 RFCHQLDFSTSGALCVALNKAAAGSAYRCFKERRVTKAYLALL-RGHIQESRVTISHAIG ::::::::::::::::::::::::::::::::::::::::::. : . : :... CCDS81 RFCHQLDFSTSGALCVALNKAAAGSAYRCFKERRVTKAYLALVVRTQSQASQISWFWNTG 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE5 RNSTEGRAHTMCIEGSQGCENPKPSLTDLVVLEHGLYAGDPVSKVLLKPLTGRTHQLRVH CCDS81 CTQAILSPKCC 130 312 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 23:40:36 2016 done: Mon Nov 7 23:40:36 2016 Total Scan time: 2.850 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]