FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE0732, 420 aa 1>>>pF1KE0732 420 - 420 aa - 420 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.8664+/-0.000354; mu= 14.1823+/- 0.022 mean_var=235.8652+/-53.232, 0's: 0 Z-trim(121.1): 173 B-trim: 1851 in 1/52 Lambda= 0.083511 statistics sampled from 36926 (37138) to 36926 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.758), E-opt: 0.2 (0.435), width: 16 Scan time: 5.530 The best scores are: opt bits E(85289) NP_112740 (OMIM: 607137,609115) heterogeneous nucl ( 420) 2873 358.9 1.4e-98 NP_001193929 (OMIM: 607137,609115) heterogeneous n ( 363) 2305 290.4 5e-78 NP_112737 (OMIM: 601324) heterogeneous nuclear rib ( 336) 1263 164.8 3e-40 NP_112556 (OMIM: 602688) heterogeneous nuclear rib ( 332) 1205 157.8 3.8e-38 NP_112738 (OMIM: 601324) heterogeneous nuclear rib ( 355) 1205 157.8 3.9e-38 NP_001003810 (OMIM: 601324) heterogeneous nuclear ( 287) 1046 138.5 2e-32 NP_004490 (OMIM: 602688) heterogeneous nuclear rib ( 285) 1016 134.9 2.5e-31 NP_002129 (OMIM: 601324) heterogeneous nuclear rib ( 306) 988 131.6 2.7e-30 NP_001317179 (OMIM: 605372) heterogeneous nuclear ( 331) 669 93.2 1e-18 NP_001317180 (OMIM: 605372) heterogeneous nuclear ( 331) 669 93.2 1e-18 NP_112533 (OMIM: 600124,615422) heterogeneous nucl ( 353) 669 93.2 1.1e-18 XP_005249786 (OMIM: 600124,615422) PREDICTED: hete ( 353) 669 93.2 1.1e-18 XP_016867599 (OMIM: 600124,615422) PREDICTED: hete ( 341) 667 93.0 1.2e-18 XP_016867598 (OMIM: 600124,615422) PREDICTED: hete ( 341) 667 93.0 1.2e-18 NP_002128 (OMIM: 600124,615422) heterogeneous nucl ( 341) 667 93.0 1.2e-18 NP_919223 (OMIM: 605372) heterogeneous nuclear rib ( 378) 661 92.3 2.2e-18 NP_001317178 (OMIM: 605372) heterogeneous nuclear ( 378) 661 92.3 2.2e-18 NP_001317176 (OMIM: 605372) heterogeneous nuclear ( 356) 659 92.1 2.5e-18 NP_001317177 (OMIM: 605372) heterogeneous nuclear ( 356) 659 92.1 2.5e-18 NP_112420 (OMIM: 164017,615424,615426) heterogeneo ( 372) 659 92.1 2.6e-18 XP_005268883 (OMIM: 164017,615424,615426) PREDICTE ( 372) 659 92.1 2.6e-18 NP_002127 (OMIM: 164017,615424,615426) heterogeneo ( 320) 648 90.7 5.9e-18 XP_005257072 (OMIM: 607897) PREDICTED: RNA-binding ( 346) 639 89.6 1.3e-17 XP_005257071 (OMIM: 607897) PREDICTED: RNA-binding ( 346) 639 89.6 1.3e-17 NP_620412 (OMIM: 607897) RNA-binding protein Musas ( 328) 623 87.7 4.8e-17 XP_016879637 (OMIM: 607897) PREDICTED: RNA-binding ( 295) 622 87.5 4.9e-17 NP_001309180 (OMIM: 607897) RNA-binding protein Mu ( 255) 620 87.1 5.3e-17 XP_016874740 (OMIM: 164017,615424,615426) PREDICTE ( 295) 621 87.4 5.3e-17 NP_001309179 (OMIM: 607897) RNA-binding protein Mu ( 324) 594 84.2 5.4e-16 NP_006796 (OMIM: 609409) heterogeneous nuclear rib ( 305) 588 83.4 8.6e-16 NP_733839 (OMIM: 607897) RNA-binding protein Musas ( 251) 581 82.4 1.4e-15 XP_011536665 (OMIM: 603328) PREDICTED: RNA-binding ( 332) 550 78.9 2.1e-14 XP_011536664 (OMIM: 603328) PREDICTED: RNA-binding ( 343) 550 78.9 2.2e-14 XP_006719466 (OMIM: 603328) PREDICTED: RNA-binding ( 351) 550 78.9 2.2e-14 NP_002433 (OMIM: 603328) RNA-binding protein Musas ( 362) 550 78.9 2.3e-14 XP_011536663 (OMIM: 603328) PREDICTED: RNA-binding ( 362) 550 78.9 2.3e-14 XP_016856354 (OMIM: 605078,612069) PREDICTED: TAR ( 414) 410 62.1 2.9e-09 XP_016856355 (OMIM: 605078,612069) PREDICTED: TAR ( 414) 410 62.1 2.9e-09 XP_016856352 (OMIM: 605078,612069) PREDICTED: TAR ( 414) 410 62.1 2.9e-09 XP_016856353 (OMIM: 605078,612069) PREDICTED: TAR ( 414) 410 62.1 2.9e-09 XP_016856357 (OMIM: 605078,612069) PREDICTED: TAR ( 414) 410 62.1 2.9e-09 NP_031401 (OMIM: 605078,612069) TAR DNA-binding pr ( 414) 410 62.1 2.9e-09 XP_016856356 (OMIM: 605078,612069) PREDICTED: TAR ( 414) 410 62.1 2.9e-09 XP_016879636 (OMIM: 607897) PREDICTED: RNA-binding ( 315) 358 55.7 1.9e-07 XP_016879638 (OMIM: 607897) PREDICTED: RNA-binding ( 259) 307 49.4 1.2e-05 XP_011522588 (OMIM: 607897) PREDICTED: RNA-binding ( 242) 305 49.2 1.4e-05 XP_005259588 (OMIM: 607430) PREDICTED: DAZ-associa ( 406) 303 49.2 2.2e-05 NP_733829 (OMIM: 607430) DAZ-associated protein 1 ( 378) 301 49.0 2.5e-05 XP_016882070 (OMIM: 607430) PREDICTED: DAZ-associa ( 406) 301 49.0 2.6e-05 NP_061832 (OMIM: 607430) DAZ-associated protein 1 ( 407) 301 49.0 2.6e-05 >>NP_112740 (OMIM: 607137,609115) heterogeneous nuclear (420 aa) initn: 2873 init1: 2873 opt: 2873 Z-score: 1890.9 bits: 358.9 E(85289): 1.4e-98 Smith-Waterman score: 2873; 100.0% identity (100.0% similar) in 420 aa overlap (1-420:1-420) 10 20 30 40 50 60 pF1KE0 MEVPPRLSHVPPPLFPSAPATLASRSLSHWRPRPPRQLAPLLPSLAPSSARQGARRAQRH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_112 MEVPPRLSHVPPPLFPSAPATLASRSLSHWRPRPPRQLAPLLPSLAPSSARQGARRAQRH 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE0 VTAQQPSRLAGGAAIKGGRRRRPDLFRRHFKSSSIQRSAAAAAATRTARQHPPADSSVTM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_112 VTAQQPSRLAGGAAIKGGRRRRPDLFRRHFKSSSIQRSAAAAAATRTARQHPPADSSVTM 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE0 EDMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_112 EDMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE0 TDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_112 TDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE0 SPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_112 SPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGS 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE0 GKCEIKVAQPKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_112 GKCEIKVAQPKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGN 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE0 YNSAYGGDQNYSGYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRGGGNHQNNYQPY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_112 YNSAYGGDQNYSGYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRGGGNHQNNYQPY 370 380 390 400 410 420 >>NP_001193929 (OMIM: 607137,609115) heterogeneous nucle (363 aa) initn: 2627 init1: 2294 opt: 2305 Z-score: 1521.8 bits: 290.4 E(85289): 5e-78 Smith-Waterman score: 2319; 86.4% identity (86.4% similar) in 420 aa overlap (1-420:1-363) 10 20 30 40 50 60 pF1KE0 MEVPPRLSHVPPPLFPSAPATLASRSLSHWRPRPPRQLAPLLPSLAPSSARQGARRAQRH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MEVPPRLSHVPPPLFPSAPATLASRSLSHWRPRPPRQLAPLLPSLAPSSARQGARRAQRH 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE0 VTAQQPSRLAGGAAIKGGRRRRPDLFRRHFKSSSIQRSAAAAAATRTARQHPPADSSVTM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VTAQQPSRLAGGAAIKGGRRRRPDLFRRHFKSSSIQRSAAAAAATRTARQHPPADSSVTM 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE0 EDMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EDMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE0 TDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE0 SPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGS 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE0 GKCEIKVAQPKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGN :::::::::::::::::::::::::::::::::::::::::: NP_001 GKCEIKVAQPKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQ------------------ 310 320 330 340 370 380 390 400 410 420 pF1KE0 YNSAYGGDQNYSGYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRGGGNHQNNYQPY ::::::::::::::::::::: NP_001 ---------------------------------------QSTYGKASRGGGNHQNNYQPY 350 360 >>NP_112737 (OMIM: 601324) heterogeneous nuclear ribonuc (336 aa) initn: 1480 init1: 1022 opt: 1263 Z-score: 843.6 bits: 164.8 E(85289): 3e-40 Smith-Waterman score: 1360; 69.8% identity (88.9% similar) in 288 aa overlap (133-420:63-336) 110 120 130 140 150 160 pF1KE0 AATRTARQHPPADSSVTMEDMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKK .::.::.::::..:.::::::::::::.:: NP_112 ATQGAAAAAGSGAGTGGGTASGGTEGGSAESEGAKIDASKNEEDEGKMFIGGLSWDTTKK 40 50 60 70 80 90 170 180 190 200 210 220 pF1KE0 DLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKR :: .:.:.::::::::.: ::.:::::::::::::.. :::::.. :::::.::.::::: NP_112 DLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKR 100 110 120 130 140 150 230 240 250 260 270 280 pF1KE0 AKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYT :::.: ::: ::.::::::::: ::.:.::::.:::.:.::::::.:::.::::::::. NP_112 AKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK 160 170 180 190 200 210 290 300 310 320 330 340 pF1KE0 DEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQ .::::::..:..::..: .:::::::. :: : ::::: :.::. :: : .:::: : NP_112 EEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQY--QQQQQWGSRGGFAG-R--ARGRGGGP 220 230 240 250 260 350 360 370 380 390 400 pF1KE0 GQNWNQGFNNYYDQGYGNYNSAYGGDQNYSGYGGYDYTGYNYGNYGYGQGYADYSGQQST .::::::..::..:::::: .:.. :.:.::::::::::: . :::: :::.::: NP_112 SQNWNQGYSNYWNQGYGNY--GYNS-QGYGGYGGYDYTGYN-NYYGYG----DYSNQQSG 270 280 290 300 310 410 420 pF1KE0 YGKASRGGGNHQNNYQPY :::.:: :: :::.:.:: NP_112 YGKVSRRGG-HQNSYKPY 320 330 >>NP_112556 (OMIM: 602688) heterogeneous nuclear ribonuc (332 aa) initn: 1188 init1: 557 opt: 1205 Z-score: 805.9 bits: 157.8 E(85289): 3.8e-38 Smith-Waterman score: 1287; 66.2% identity (85.2% similar) in 290 aa overlap (133-420:55-332) 110 120 130 140 150 160 pF1KE0 AATRTARQHPPADSSVTMEDMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKK :::..::::::..: ::::.:::::::::: NP_112 EGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQINASKNEEDAGKMFVGGLSWDTSKK 30 40 50 60 70 80 170 180 190 200 210 220 pF1KE0 DLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKR :: .:...:::::::::: :: :::::::::.::::::::.:::. :::.:::..::::. NP_112 DLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKK 90 100 110 120 130 140 230 240 250 260 270 280 pF1KE0 AKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYT : :.: :.: ::.:::::.:...::.:.:::: ::::: :::::: : :.:::: :::. NP_112 AMAMK-KDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFK 150 160 170 180 190 200 290 300 310 320 330 340 pF1KE0 DEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGRGAAA-GGRG-GTRGRGR .::::::.::...: ....::::::::::::: :::: .:::: :.:: : : : NP_112 EEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVY-QQQQYGSGGRGNRNRGNRGSGGGGGGG 210 220 230 240 250 260 350 360 370 380 390 400 pF1KE0 GQGQNWNQGFNNYYDQGYGNYNSAYGGDQNYSGYGGYDYTGYNYGNYGYGQGYADYSGQQ ::.:.::::..::..:::: :...:: :::::::. :.: :::: :: ::: . NP_112 GQSQSWNQGYGNYWNQGYG-YQQGYG-----PGYGGYDYSPYGY--YGYGPGY-DYSQGS 270 280 290 300 310 410 420 pF1KE0 STYGKASRGGGNHQNNYQPY ..:::..: :: :::::.:: NP_112 TNYGKSQRRGG-HQNNYKPY 320 330 >>NP_112738 (OMIM: 601324) heterogeneous nuclear ribonuc (355 aa) initn: 1420 init1: 962 opt: 1205 Z-score: 805.6 bits: 157.8 E(85289): 3.9e-38 Smith-Waterman score: 1312; 65.5% identity (83.4% similar) in 307 aa overlap (133-420:63-355) 110 120 130 140 pF1KE0 AATRTARQHPPADSSVTMEDMNEYSNIEEFAEGSKINASKNQQDDG-------------- .::.::.::::..:.: NP_112 ATQGAAAAAGSGAGTGGGTASGGTEGGSAESEGAKIDASKNEEDEGHSNSSPRHSEAATA 40 50 60 70 80 90 150 160 170 180 190 200 pF1KE0 -----KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD :::::::::::.:::: .:.:.::::::::.: ::.:::::::::::::.. ::: NP_112 QREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVD 100 110 120 130 140 150 210 220 230 240 250 260 pF1KE0 KVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIE ::.. :::::.::.::::::::.: ::: ::.::::::::: ::.:.::::.:::.:.:: NP_112 KVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIE 160 170 180 190 200 210 270 280 290 300 310 320 pF1KE0 LPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQQKG ::::.:::.::::::::. .::::::..:..::..: .:::::::. :: : ::::: : NP_112 LPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQY--QQQQQWG 220 230 240 250 260 270 330 340 350 360 370 380 pF1KE0 GRGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQNYSGYGGYDYTGYN .::. :: : .:::: : .::::::..::..:::::: .:.. :.:.::::::::::: NP_112 SRGGFAG-R--ARGRGGGPSQNWNQGYSNYWNQGYGNY--GYNS-QGYGGYGGYDYTGYN 280 290 300 310 320 390 400 410 420 pF1KE0 YGNYGYGQGYADYSGQQSTYGKASRGGGNHQNNYQPY . :::: :::.::: :::.:: :: :::.:.:: NP_112 -NYYGYG----DYSNQQSGYGKVSRRGG-HQNSYKPY 330 340 350 >>NP_001003810 (OMIM: 601324) heterogeneous nuclear ribo (287 aa) initn: 1168 init1: 995 opt: 1046 Z-score: 703.0 bits: 138.5 E(85289): 2e-32 Smith-Waterman score: 1055; 65.8% identity (87.0% similar) in 231 aa overlap (133-363:63-283) 110 120 130 140 150 160 pF1KE0 AATRTARQHPPADSSVTMEDMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKK .::.::.::::..:.::::::::::::.:: NP_001 ATQGAAAAAGSGAGTGGGTASGGTEGGSAESEGAKIDASKNEEDEGKMFIGGLSWDTTKK 40 50 60 70 80 90 170 180 190 200 210 220 pF1KE0 DLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKR :: .:.:.::::::::.: ::.:::::::::::::.. :::::.. :::::.::.::::: NP_001 DLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKR 100 110 120 130 140 150 230 240 250 260 270 280 pF1KE0 AKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYT :::.: ::: ::.::::::::: ::.:.::::.:::.:.::::::.:::.::::::::. NP_001 AKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK 160 170 180 190 200 210 290 300 310 320 330 340 pF1KE0 DEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQ .::::::..:..::..: .:::::::. :: :.:::: :.::: ::.::. NP_001 EEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQW---------GSRGGFAGRARGR 220 230 240 250 260 350 360 370 380 390 400 pF1KE0 GQNWNQGFNNYYDQGYGNYNSAYGGDQNYSGYGGYDYTGYNYGNYGYGQGYADYSGQQST : . ..:... .: :. :: NP_001 GGDQQSGYGKVSRRG-GHQNSYKPY 270 280 >>NP_004490 (OMIM: 602688) heterogeneous nuclear ribonuc (285 aa) initn: 986 init1: 513 opt: 1016 Z-score: 683.5 bits: 134.9 E(85289): 2.5e-31 Smith-Waterman score: 1016; 65.0% identity (83.8% similar) in 234 aa overlap (133-365:55-282) 110 120 130 140 150 160 pF1KE0 AATRTARQHPPADSSVTMEDMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKK :::..::::::..: ::::.:::::::::: NP_004 EGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQINASKNEEDAGKMFVGGLSWDTSKK 30 40 50 60 70 80 170 180 190 200 210 220 pF1KE0 DLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKR :: .:...:::::::::: :: :::::::::.::::::::.:::. :::.:::..::::. NP_004 DLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKK 90 100 110 120 130 140 230 240 250 260 270 280 pF1KE0 AKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYT : :.: :.: ::.:::::.:...::.:.:::: ::::: :::::: : :.:::: :::. NP_004 AMAMK-KDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFK 150 160 170 180 190 200 290 300 310 320 330 340 pF1KE0 DEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQ .::::::.::...: ....::::::::::::: :::: .:::: : :. : : : NP_004 EEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVY-QQQQYGSGGRGNRNRGNRGSGGGGGGG 210 220 230 240 250 260 350 360 370 380 390 400 pF1KE0 GQNWNQGFNNY-YDQGYGNYNSAYGGDQNYSGYGGYDYTGYNYGNYGYGQGYADYSGQQS :: : .:: .: :.... : NP_004 GQ----GSTNYGKSQRRGGHQNNYKPY 270 280 >>NP_002129 (OMIM: 601324) heterogeneous nuclear ribonuc (306 aa) initn: 1107 init1: 934 opt: 988 Z-score: 665.0 bits: 131.6 E(85289): 2.7e-30 Smith-Waterman score: 1007; 60.8% identity (80.4% similar) in 250 aa overlap (133-363:63-302) 110 120 130 140 pF1KE0 AATRTARQHPPADSSVTMEDMNEYSNIEEFAEGSKINASKNQQDDG-------------- .::.::.::::..:.: NP_002 ATQGAAAAAGSGAGTGGGTASGGTEGGSAESEGAKIDASKNEEDEGHSNSSPRHSEAATA 40 50 60 70 80 90 150 160 170 180 190 200 pF1KE0 -----KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD :::::::::::.:::: .:.:.::::::::.: ::.:::::::::::::.. ::: NP_002 QREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVD 100 110 120 130 140 150 210 220 230 240 250 260 pF1KE0 KVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIE ::.. :::::.::.::::::::.: ::: ::.::::::::: ::.:.::::.:::.:.:: NP_002 KVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIE 160 170 180 190 200 210 270 280 290 300 310 320 pF1KE0 LPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQQKG ::::.:::.::::::::. .::::::..:..::..: .:::::::. :: :.:::: NP_002 LPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQW--- 220 230 240 250 260 330 340 350 360 370 380 pF1KE0 GRGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQNYSGYGGYDYTGYN :.::: ::.::.: . ..:... .: :. :: NP_002 ------GSRGGFAGRARGRGGDQQSGYGKVSRRG-GHQNSYKPY 270 280 290 300 390 400 410 420 pF1KE0 YGNYGYGQGYADYSGQQSTYGKASRGGGNHQNNYQPY >>NP_001317179 (OMIM: 605372) heterogeneous nuclear ribo (331 aa) initn: 563 init1: 320 opt: 669 Z-score: 456.9 bits: 93.2 E(85289): 1e-18 Smith-Waterman score: 669; 38.2% identity (67.8% similar) in 301 aa overlap (135-420:22-313) 110 120 130 140 150 160 pF1KE0 TRTARQHPPADSSVTMEDMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDL : . . :. .. :.::::::..:. .: NP_001 MEVKPPPGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSL 10 20 30 40 50 170 180 190 200 210 220 pF1KE0 TEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAK :.. ..: ..::.. :: : :::::::: .. . :: .. . ::.::....:::: NP_001 REHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAV 60 70 80 90 100 110 230 240 250 260 270 pF1KE0 ALKGKEPP------KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCF . . . : ::.::::.. :: : ....:: .:.::.::. : .....::: : NP_001 SREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAF 120 130 140 150 160 170 280 290 300 310 320 330 pF1KE0 ITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGRGAAAG---GRGGT .:. :.. : :.. ..:: :.. .::.: : :. ... .:. :::...: ::::. NP_001 VTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGSQR--GRGGGSGNFMGRGGN 180 190 200 210 220 340 350 360 370 380 390 pF1KE0 RGRGRGQ-GQNWNQGFNNYYDQGYGNYNSAYGG-DQNYSGYGGYDYTGYNYGNYGYGQGY : : :. :.. : : . : : :. ..::: : .:.:.:: : :::: : .: NP_001 FGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGGGDGGYNGFGG-D------GNYGGGGNY 230 240 250 260 270 280 400 410 420 pF1KE0 AD---YSGQQ-STYGKASRGGGNHQNNYQPY : ::::: :.:: . :. . ... .:: NP_001 NDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGSGGYGSRRF 290 300 310 320 330 >>NP_001317180 (OMIM: 605372) heterogeneous nuclear ribo (331 aa) initn: 563 init1: 320 opt: 669 Z-score: 456.9 bits: 93.2 E(85289): 1e-18 Smith-Waterman score: 669; 38.2% identity (67.8% similar) in 301 aa overlap (135-420:22-313) 110 120 130 140 150 160 pF1KE0 TRTARQHPPADSSVTMEDMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDL : . . :. .. :.::::::..:. .: NP_001 MEVKPPPGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSL 10 20 30 40 50 170 180 190 200 210 220 pF1KE0 TEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAK :.. ..: ..::.. :: : :::::::: .. . :: .. . ::.::....:::: NP_001 REHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAV 60 70 80 90 100 110 230 240 250 260 270 pF1KE0 ALKGKEPP------KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCF . . . : ::.::::.. :: : ....:: .:.::.::. : .....::: : NP_001 SREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAF 120 130 140 150 160 170 280 290 300 310 320 330 pF1KE0 ITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGRGAAAG---GRGGT .:. :.. : :.. ..:: :.. .::.: : :. ... .:. :::...: ::::. NP_001 VTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGSQR--GRGGGSGNFMGRGGN 180 190 200 210 220 340 350 360 370 380 390 pF1KE0 RGRGRGQ-GQNWNQGFNNYYDQGYGNYNSAYGG-DQNYSGYGGYDYTGYNYGNYGYGQGY : : :. :.. : : . : : :. ..::: : .:.:.:: : :::: : .: NP_001 FGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGGGDGGYNGFGG-D------GNYGGGGNY 230 240 250 260 270 280 400 410 420 pF1KE0 AD---YSGQQ-STYGKASRGGGNHQNNYQPY : ::::: :.:: . :. . ... .:: NP_001 NDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGSGGYGSRRF 290 300 310 320 330 420 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 01:25:05 2016 done: Tue Nov 8 01:25:06 2016 Total Scan time: 5.530 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]