FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3933, 221 aa 1>>>pF1KE3933 221 - 221 aa - 221 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4876+/-0.000656; mu= 16.7751+/- 0.040 mean_var=142.0528+/-29.076, 0's: 0 Z-trim(116.7): 92 B-trim: 0 in 0/51 Lambda= 0.107609 statistics sampled from 17255 (17358) to 17255 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.837), E-opt: 0.2 (0.533), width: 16 Scan time: 2.280 The best scores are: opt bits E(32554) CCDS4464.1 TRIM7 gene_id:81786|Hs108|chr5 ( 221) 1525 246.9 7.7e-66 CCDS4462.1 TRIM7 gene_id:81786|Hs108|chr5 ( 511) 1418 230.7 1.3e-60 >>CCDS4464.1 TRIM7 gene_id:81786|Hs108|chr5 (221 aa) initn: 1525 init1: 1525 opt: 1525 Z-score: 1295.5 bits: 246.9 E(32554): 7.7e-66 Smith-Waterman score: 1525; 99.5% identity (100.0% similar) in 221 aa overlap (1-221:1-221) 10 20 30 40 50 60 pF1KE3 MAAVGPRTGPGTGAEALALAAELQGEATCSICLELFREPVSVECGHSFCRACIGRCWERP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 MAAVGPRTGPGTGAEALALAAELQGEATCSICLELFREPVSVECGHSFCRACIGRCWERP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 GAGSVGAATRAPPFPLPCPQCREPARPSQLRPNRELAAVATLLRRFSLPAAAPGEHGSQA ::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::: CCDS44 GAGSVGAATRAPPFPLPCPQCREPARPSQLRPNRQLAAVATLLRRFSLPAAAPGEHGSQA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 AAARAAAARCGQHGEPFKLYCQDDGRAICVVCDRAREHREHAVLPLDEAVQEAKELLESR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 AAARAAAARCGQHGEPFKLYCQDDGRAICVVCDRAREHREHAVLPLDEAVQEAKELLESR 130 140 150 160 170 180 190 200 210 220 pF1KE3 LRVLKKELEDCEVFRSTEKKESKELLVSQAPAGPPWDITEA ::::::::::::::::::::::::::::::::::::::::: CCDS44 LRVLKKELEDCEVFRSTEKKESKELLVSQAPAGPPWDITEA 190 200 210 220 >>CCDS4462.1 TRIM7 gene_id:81786|Hs108|chr5 (511 aa) initn: 1438 init1: 1418 opt: 1418 Z-score: 1201.9 bits: 230.7 E(32554): 1.3e-60 Smith-Waterman score: 1418; 98.1% identity (99.5% similar) in 210 aa overlap (1-210:1-210) 10 20 30 40 50 60 pF1KE3 MAAVGPRTGPGTGAEALALAAELQGEATCSICLELFREPVSVECGHSFCRACIGRCWERP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 MAAVGPRTGPGTGAEALALAAELQGEATCSICLELFREPVSVECGHSFCRACIGRCWERP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 GAGSVGAATRAPPFPLPCPQCREPARPSQLRPNRELAAVATLLRRFSLPAAAPGEHGSQA ::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::: CCDS44 GAGSVGAATRAPPFPLPCPQCREPARPSQLRPNRQLAAVATLLRRFSLPAAAPGEHGSQA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 AAARAAAARCGQHGEPFKLYCQDDGRAICVVCDRAREHREHAVLPLDEAVQEAKELLESR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 AAARAAAARCGQHGEPFKLYCQDDGRAICVVCDRAREHREHAVLPLDEAVQEAKELLESR 130 140 150 160 170 180 190 200 210 220 pF1KE3 LRVLKKELEDCEVFRSTEKKESKELLVSQAPAGPPWDITEA :::::::::::::::::::::::::: ..: CCDS44 LRVLKKELEDCEVFRSTEKKESKELLKQMAAEQEKVGAEFQALRAFLVEQEGRLLGRLEE 190 200 210 220 230 240 221 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 08:49:17 2016 done: Sun Nov 6 08:49:17 2016 Total Scan time: 2.280 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]