FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB9452, 519 aa 1>>>pF1KB9452 519 - 519 aa - 519 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.0818+/-0.000908; mu= 10.3057+/- 0.055 mean_var=123.4468+/-24.128, 0's: 0 Z-trim(110.6): 10 B-trim: 455 in 1/50 Lambda= 0.115434 statistics sampled from 11754 (11758) to 11754 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.712), E-opt: 0.2 (0.361), width: 16 Scan time: 3.400 The best scores are: opt bits E(32554) CCDS6958.1 GTF3C5 gene_id:9328|Hs108|chr9 ( 519) 3506 595.1 6.2e-170 CCDS48050.1 GTF3C5 gene_id:9328|Hs108|chr9 ( 526) 3482 591.1 1e-168 CCDS75927.1 GTF3C5 gene_id:9328|Hs108|chr9 ( 345) 2221 381.0 1.2e-105 >>CCDS6958.1 GTF3C5 gene_id:9328|Hs108|chr9 (519 aa) initn: 3506 init1: 3506 opt: 3506 Z-score: 3164.3 bits: 595.1 E(32554): 6.2e-170 Smith-Waterman score: 3506; 100.0% identity (100.0% similar) in 519 aa overlap (1-519:1-519) 10 20 30 40 50 60 pF1KB9 MAAEAADLGLGAAVPVELRRERRMVCVEYPGVVRDVAKMLPTLGGEEGVSRIYADPTKRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 MAAEAADLGLGAAVPVELRRERRMVCVEYPGVVRDVAKMLPTLGGEEGVSRIYADPTKRL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 ELYFRPKDPYCHPVCANRFSTSSLLLRIRKRTRRQKGVLGTEAHSEVTFDMEILGIISTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 ELYFRPKDPYCHPVCANRFSTSSLLLRIRKRTRRQKGVLGTEAHSEVTFDMEILGIISTI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB9 YKFQGMSDFQYLAVHTEAGGKHTSMYDKVLMLRPEKEAFFHQELPLYIPPPIFSRLDAPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 YKFQGMSDFQYLAVHTEAGGKHTSMYDKVLMLRPEKEAFFHQELPLYIPPPIFSRLDAPV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB9 DYFYRPETQHREGYNNPPISGENLIGLSRARRPHNAIFVNFEDEEVPKQPLEAAAQTWRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 DYFYRPETQHREGYNNPPISGENLIGLSRARRPHNAIFVNFEDEEVPKQPLEAAAQTWRR 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB9 VCTNPVDRKVEEELRKLFDIRPIWSRNAVKANISVHPDKLKVLLPFIAYYMITGPWRSLW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 VCTNPVDRKVEEELRKLFDIRPIWSRNAVKANISVHPDKLKVLLPFIAYYMITGPWRSLW 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB9 IRFGYDPRKNPDAKIYQVLDFRIRCGMKHGYAPSDLPVKAKRSTYNYSLPITVKKTSSQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 IRFGYDPRKNPDAKIYQVLDFRIRCGMKHGYAPSDLPVKAKRSTYNYSLPITVKKTSSQL 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB9 VTMHDLKQGLGPSGTSGARKPASSKYKLKDSVYIFREGALPPYRQMFYQLCDLNVEELQK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 VTMHDLKQGLGPSGTSGARKPASSKYKLKDSVYIFREGALPPYRQMFYQLCDLNVEELQK 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB9 IIHRNDGAENSCTERDGWCLPKTSDELRDTMSLMIRQTIRSKRPALFSSSAKADGGKEQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 IIHRNDGAENSCTERDGWCLPKTSDELRDTMSLMIRQTIRSKRPALFSSSAKADGGKEQL 430 440 450 460 470 480 490 500 510 pF1KB9 TYESGEDEEDEEEEEEEEEDFKPSDGSENEMETEILDYV ::::::::::::::::::::::::::::::::::::::: CCDS69 TYESGEDEEDEEEEEEEEEDFKPSDGSENEMETEILDYV 490 500 510 >>CCDS48050.1 GTF3C5 gene_id:9328|Hs108|chr9 (526 aa) initn: 2796 init1: 2646 opt: 3482 Z-score: 3142.7 bits: 591.1 E(32554): 1e-168 Smith-Waterman score: 3482; 98.7% identity (98.7% similar) in 526 aa overlap (1-519:1-526) 10 20 30 40 50 60 pF1KB9 MAAEAADLGLGAAVPVELRRERRMVCVEYPGVVRDVAKMLPTLGGEEGVSRIYADPTKRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS48 MAAEAADLGLGAAVPVELRRERRMVCVEYPGVVRDVAKMLPTLGGEEGVSRIYADPTKRL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 ELYFRPKDPYCHPVCANRFSTSSLLLRIRKRTRRQKGVLGTEAHSEVTFDMEILGIISTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS48 ELYFRPKDPYCHPVCANRFSTSSLLLRIRKRTRRQKGVLGTEAHSEVTFDMEILGIISTI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB9 YKFQGMSDFQYLAVHTEAGGKHTSMYDKVLMLRPEKEAFFHQELPLYIPPPIFSRLDAPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS48 YKFQGMSDFQYLAVHTEAGGKHTSMYDKVLMLRPEKEAFFHQELPLYIPPPIFSRLDAPV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB9 DYFYRPETQHREGYNNPPISGENLIGLSRARRPHNAIFVNFEDEEVPKQPLEAAAQTWRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS48 DYFYRPETQHREGYNNPPISGENLIGLSRARRPHNAIFVNFEDEEVPKQPLEAAAQTWRR 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB9 VCTNPVDRKVEEELRKLFDIRPIWSRNAVKANISVHPDKLKVLLPFIAYYMITGPWRSLW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS48 VCTNPVDRKVEEELRKLFDIRPIWSRNAVKANISVHPDKLKVLLPFIAYYMITGPWRSLW 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB9 IRFGYDPRKNPDAKIYQVLDFRIRCGMKHGYAPSDLPVKAKRSTYNYSLPITVKKTSSQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS48 IRFGYDPRKNPDAKIYQVLDFRIRCGMKHGYAPSDLPVKAKRSTYNYSLPITVKKTSSQL 310 320 330 340 350 360 370 380 390 400 410 pF1KB9 VTMHDLKQGLGPSGTSGARKPASSKYKLK-------DSVYIFREGALPPYRQMFYQLCDL ::::::::::::::::::::::::::::: :::::::::::::::::::::::: CCDS48 VTMHDLKQGLGPSGTSGARKPASSKYKLKVSLQTLRDSVYIFREGALPPYRQMFYQLCDL 370 380 390 400 410 420 420 430 440 450 460 470 pF1KB9 NVEELQKIIHRNDGAENSCTERDGWCLPKTSDELRDTMSLMIRQTIRSKRPALFSSSAKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS48 NVEELQKIIHRNDGAENSCTERDGWCLPKTSDELRDTMSLMIRQTIRSKRPALFSSSAKA 430 440 450 460 470 480 480 490 500 510 pF1KB9 DGGKEQLTYESGEDEEDEEEEEEEEEDFKPSDGSENEMETEILDYV :::::::::::::::::::::::::::::::::::::::::::::: CCDS48 DGGKEQLTYESGEDEEDEEEEEEEEEDFKPSDGSENEMETEILDYV 490 500 510 520 >>CCDS75927.1 GTF3C5 gene_id:9328|Hs108|chr9 (345 aa) initn: 2221 init1: 2221 opt: 2221 Z-score: 2010.4 bits: 381.0 E(32554): 1.2e-105 Smith-Waterman score: 2221; 100.0% identity (100.0% similar) in 328 aa overlap (192-519:18-345) 170 180 190 200 210 220 pF1KB9 QELPLYIPPPIFSRLDAPVDYFYRPETQHREGYNNPPISGENLIGLSRARRPHNAIFVNF :::::::::::::::::::::::::::::: CCDS75 MWLRCCRLWAARKASPGEGYNNPPISGENLIGLSRARRPHNAIFVNF 10 20 30 40 230 240 250 260 270 280 pF1KB9 EDEEVPKQPLEAAAQTWRRVCTNPVDRKVEEELRKLFDIRPIWSRNAVKANISVHPDKLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 EDEEVPKQPLEAAAQTWRRVCTNPVDRKVEEELRKLFDIRPIWSRNAVKANISVHPDKLK 50 60 70 80 90 100 290 300 310 320 330 340 pF1KB9 VLLPFIAYYMITGPWRSLWIRFGYDPRKNPDAKIYQVLDFRIRCGMKHGYAPSDLPVKAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 VLLPFIAYYMITGPWRSLWIRFGYDPRKNPDAKIYQVLDFRIRCGMKHGYAPSDLPVKAK 110 120 130 140 150 160 350 360 370 380 390 400 pF1KB9 RSTYNYSLPITVKKTSSQLVTMHDLKQGLGPSGTSGARKPASSKYKLKDSVYIFREGALP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 RSTYNYSLPITVKKTSSQLVTMHDLKQGLGPSGTSGARKPASSKYKLKDSVYIFREGALP 170 180 190 200 210 220 410 420 430 440 450 460 pF1KB9 PYRQMFYQLCDLNVEELQKIIHRNDGAENSCTERDGWCLPKTSDELRDTMSLMIRQTIRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 PYRQMFYQLCDLNVEELQKIIHRNDGAENSCTERDGWCLPKTSDELRDTMSLMIRQTIRS 230 240 250 260 270 280 470 480 490 500 510 pF1KB9 KRPALFSSSAKADGGKEQLTYESGEDEEDEEEEEEEEEDFKPSDGSENEMETEILDYV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 KRPALFSSSAKADGGKEQLTYESGEDEEDEEEEEEEEEDFKPSDGSENEMETEILDYV 290 300 310 320 330 340 519 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 01:54:38 2016 done: Sun Nov 6 01:54:39 2016 Total Scan time: 3.400 Total Display time: 0.020 Function used was FASTA [36.3.4 Apr, 2011]