FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE9531, 295 aa 1>>>pF1KE9531 295 - 295 aa - 295 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.7113+/-0.000422; mu= 18.4253+/- 0.026 mean_var=81.1102+/-20.575, 0's: 0 Z-trim(110.7): 304 B-trim: 2303 in 2/52 Lambda= 0.142409 statistics sampled from 18598 (19064) to 18598 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.578), E-opt: 0.2 (0.224), width: 16 Scan time: 7.180 The best scores are: opt bits E(85289) NP_002912 (OMIM: 600342,613769) RPE-retinal G prot ( 295) 1973 415.5 6.3e-116 NP_001012738 (OMIM: 600342,613769) RPE-retinal G p ( 291) 1928 406.2 3.8e-113 NP_001012740 (OMIM: 600342,613769) RPE-retinal G p ( 253) 1397 297.1 2.4e-80 NP_006574 (OMIM: 605224) visual pigment-like recep ( 337) 358 83.7 5.3e-16 NP_150598 (OMIM: 606665) melanopsin isoform 1 [Hom ( 478) 325 77.1 7.4e-14 XP_016872445 (OMIM: 606665) PREDICTED: melanopsin ( 528) 325 77.2 7.9e-14 NP_055137 (OMIM: 606695) opsin-3 [Homo sapiens] ( 402) 301 72.1 2e-12 NP_859528 (OMIM: 609042) opsin-5 [Homo sapiens] ( 354) 295 70.8 4.3e-12 XP_016865905 (OMIM: 609042) PREDICTED: opsin-5 iso ( 408) 295 70.9 4.7e-12 XP_016865900 (OMIM: 609042) PREDICTED: opsin-5 iso ( 298) 288 69.3 1e-11 NP_000530 (OMIM: 136880,180380,610445,613731) rhod ( 348) 269 65.5 1.7e-10 XP_016872446 (OMIM: 606665) PREDICTED: melanopsin ( 405) 258 63.3 9.2e-10 NP_001025186 (OMIM: 606665) melanopsin isoform 2 [ ( 489) 258 63.4 1e-09 XP_016872444 (OMIM: 606665) PREDICTED: melanopsin ( 539) 258 63.4 1.1e-09 NP_005949 (OMIM: 600665) melatonin receptor type 1 ( 350) 218 55.0 2.5e-07 XP_011515565 (OMIM: 188545) PREDICTED: thyrotropin ( 398) 209 53.2 9.7e-07 NP_003292 (OMIM: 188545) thyrotropin-releasing hor ( 398) 209 53.2 9.7e-07 NP_004215 (OMIM: 300207) melatonin-related recepto ( 617) 202 52.0 3.5e-06 XP_011541141 (OMIM: 125853,600804) PREDICTED: mela ( 362) 197 50.7 5e-06 NP_005950 (OMIM: 125853,600804) melatonin receptor ( 362) 197 50.7 5e-06 NP_001137391 (OMIM: 601531) leukotriene B4 recepto ( 352) 195 50.3 6.6e-06 NP_858043 (OMIM: 601531) leukotriene B4 receptor 1 ( 352) 195 50.3 6.6e-06 NP_062874 (OMIM: 182137) 5-hydroxytryptamine recep ( 432) 195 50.4 7.5e-06 NP_000863 (OMIM: 182137) 5-hydroxytryptamine recep ( 445) 195 50.4 7.7e-06 NP_062873 (OMIM: 182137) 5-hydroxytryptamine recep ( 479) 195 50.4 8.1e-06 NP_005279 (OMIM: 600752) G-protein coupled recepto ( 334) 189 49.0 1.5e-05 NP_001050 (OMIM: 162332,614840) neuromedin-K recep ( 465) 190 49.4 1.6e-05 XP_016865901 (OMIM: 609042) PREDICTED: opsin-5 iso ( 285) 185 48.1 2.4e-05 XP_016865902 (OMIM: 609042) PREDICTED: opsin-5 iso ( 285) 185 48.1 2.4e-05 NP_000904 (OMIM: 602548) nociceptin receptor isofo ( 370) 186 48.4 2.4e-05 NP_001186948 (OMIM: 602548) nociceptin receptor is ( 370) 186 48.4 2.4e-05 XP_016883343 (OMIM: 602548) PREDICTED: nociceptin ( 370) 186 48.4 2.4e-05 NP_872588 (OMIM: 602548) nociceptin receptor isofo ( 370) 186 48.4 2.4e-05 XP_016883341 (OMIM: 602548) PREDICTED: nociceptin ( 388) 186 48.5 2.5e-05 XP_011527130 (OMIM: 602548) PREDICTED: nociceptin ( 388) 186 48.5 2.5e-05 XP_016883342 (OMIM: 602548) PREDICTED: nociceptin ( 388) 186 48.5 2.5e-05 NP_001305782 (OMIM: 602548) nociceptin receptor is ( 399) 186 48.5 2.6e-05 NP_004113 (OMIM: 601898) growth hormone secretagog ( 289) 183 47.7 3.2e-05 NP_940799 (OMIM: 601898) growth hormone secretagog ( 366) 183 47.8 3.7e-05 XP_016865899 (OMIM: 609042) PREDICTED: opsin-5 iso ( 299) 182 47.5 3.7e-05 NP_001699 (OMIM: 190900,613522) short-wave-sensiti ( 348) 180 47.2 5.5e-05 NP_000675 (OMIM: 109630,607276) beta-1 adrenergic ( 477) 180 47.3 6.8e-05 NP_000903 (OMIM: 165196) kappa-type opioid recepto ( 380) 178 46.8 7.8e-05 NP_065103 (OMIM: 606383) G-protein coupled recepto ( 396) 178 46.8 8e-05 XP_011536797 (OMIM: 606383) PREDICTED: G-protein c ( 396) 178 46.8 8e-05 NP_001305426 (OMIM: 165196) kappa-type opioid rece ( 409) 178 46.8 8.2e-05 NP_000015 (OMIM: 109690,600807,601665) beta-2 adre ( 413) 178 46.8 8.2e-05 NP_871001 (OMIM: 609043) relaxin-3 receptor 2 [Hom ( 374) 177 46.6 8.9e-05 NP_000016 (OMIM: 109691,601665) beta-3 adrenergic ( 408) 176 46.4 0.00011 NP_005272 (OMIM: 600241) G-protein coupled recepto ( 330) 170 45.1 0.00022 >>NP_002912 (OMIM: 600342,613769) RPE-retinal G protein- (295 aa) initn: 1973 init1: 1973 opt: 1973 Z-score: 2202.2 bits: 415.5 E(85289): 6.3e-116 Smith-Waterman score: 1973; 100.0% identity (100.0% similar) in 295 aa overlap (1-295:1-295) 10 20 30 40 50 60 pF1KE9 MAETSALPTGFGELEVLAVGMVLLVEALSGLSLNTLTIFSFCKTPELRTPCHLLVLSLAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 MAETSALPTGFGELEVLAVGMVLLVEALSGLSLNTLTIFSFCKTPELRTPCHLLVLSLAL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 ADSGISLNALVAATSSLLRVSHRRWPYGSDGCQAHGFQGFVTALASICSSAAIAWGRYHH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 ADSGISLNALVAATSSLLRVSHRRWPYGSDGCQAHGFQGFVTALASICSSAAIAWGRYHH 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 YCTRSQLAWNSAVSLVLFVWLSSAFWAALPLLGWGHYDYEPLGTCCTLDYSKGDRNFTSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 YCTRSQLAWNSAVSLVLFVWLSSAFWAALPLLGWGHYDYEPLGTCCTLDYSKGDRNFTSF 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE9 LFTMSFFNFAMPLFITITSYSLMEQKLGKSGHLQVNTTLPARTLLLGWGPYAILYLYAVI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 LFTMSFFNFAMPLFITITSYSLMEQKLGKSGHLQVNTTLPARTLLLGWGPYAILYLYAVI 190 200 210 220 230 240 250 260 270 280 290 pF1KE9 ADVTSISPKLQMVPALIAKMVPTINAINYALGNEMVCRGIWQCLSPQKREKDRTK ::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 ADVTSISPKLQMVPALIAKMVPTINAINYALGNEMVCRGIWQCLSPQKREKDRTK 250 260 270 280 290 >>NP_001012738 (OMIM: 600342,613769) RPE-retinal G prote (291 aa) initn: 1477 init1: 1477 opt: 1928 Z-score: 2152.3 bits: 406.2 E(85289): 3.8e-113 Smith-Waterman score: 1928; 98.6% identity (98.6% similar) in 295 aa overlap (1-295:1-291) 10 20 30 40 50 60 pF1KE9 MAETSALPTGFGELEVLAVGMVLLVEALSGLSLNTLTIFSFCKTPELRTPCHLLVLSLAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MAETSALPTGFGELEVLAVGMVLLVEALSGLSLNTLTIFSFCKTPELRTPCHLLVLSLAL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 ADSGISLNALVAATSSLLRVSHRRWPYGSDGCQAHGFQGFVTALASICSSAAIAWGRYHH :::::::::::::::::: :::::::::::::::::::::::::::::::::::::: NP_001 ADSGISLNALVAATSSLL----RRWPYGSDGCQAHGFQGFVTALASICSSAAIAWGRYHH 70 80 90 100 110 130 140 150 160 170 180 pF1KE9 YCTRSQLAWNSAVSLVLFVWLSSAFWAALPLLGWGHYDYEPLGTCCTLDYSKGDRNFTSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 YCTRSQLAWNSAVSLVLFVWLSSAFWAALPLLGWGHYDYEPLGTCCTLDYSKGDRNFTSF 120 130 140 150 160 170 190 200 210 220 230 240 pF1KE9 LFTMSFFNFAMPLFITITSYSLMEQKLGKSGHLQVNTTLPARTLLLGWGPYAILYLYAVI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LFTMSFFNFAMPLFITITSYSLMEQKLGKSGHLQVNTTLPARTLLLGWGPYAILYLYAVI 180 190 200 210 220 230 250 260 270 280 290 pF1KE9 ADVTSISPKLQMVPALIAKMVPTINAINYALGNEMVCRGIWQCLSPQKREKDRTK ::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ADVTSISPKLQMVPALIAKMVPTINAINYALGNEMVCRGIWQCLSPQKREKDRTK 240 250 260 270 280 290 >>NP_001012740 (OMIM: 600342,613769) RPE-retinal G prote (253 aa) initn: 946 init1: 946 opt: 1397 Z-score: 1563.4 bits: 297.1 E(85289): 2.4e-80 Smith-Waterman score: 1600; 85.8% identity (85.8% similar) in 295 aa overlap (1-295:1-253) 10 20 30 40 50 60 pF1KE9 MAETSALPTGFGELEVLAVGMVLLVEALSGLSLNTLTIFSFCKTPELRTPCHLLVLSLAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MAETSALPTGFGELEVLAVGMVLLVEALSGLSLNTLTIFSFCKTPELRTPCHLLVLSLAL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 ADSGISLNALVAATSSLLRVSHRRWPYGSDGCQAHGFQGFVTALASICSSAAIAWGRYHH :::::::::::::::::: :::::::::::::::::::::::::::::::::::::: NP_001 ADSGISLNALVAATSSLL----RRWPYGSDGCQAHGFQGFVTALASICSSAAIAWGRYHH 70 80 90 100 110 130 140 150 160 170 180 pF1KE9 YCTRSQLAWNSAVSLVLFVWLSSAFWAALPLLGWGHYDYEPLGTCCTLDYSKGDRNFTSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 YCTRSQLAWNSAVSLVLFVWLSSAFWAALPLLGWGHYDYEPLGTCCTLDYSKGDRNFTSF 120 130 140 150 160 170 190 200 210 220 230 240 pF1KE9 LFTMSFFNFAMPLFITITSYSLMEQKLGKSGHLQVNTTLPARTLLLGWGPYAILYLYAVI ::::::::::::::::::::::::::::::::::: NP_001 LFTMSFFNFAMPLFITITSYSLMEQKLGKSGHLQV------------------------- 180 190 200 210 250 260 270 280 290 pF1KE9 ADVTSISPKLQMVPALIAKMVPTINAINYALGNEMVCRGIWQCLSPQKREKDRTK :::::::::::::::::::::::::::::::::::::::::: NP_001 -------------PALIAKMVPTINAINYALGNEMVCRGIWQCLSPQKREKDRTK 220 230 240 250 >>NP_006574 (OMIM: 605224) visual pigment-like receptor (337 aa) initn: 307 init1: 183 opt: 358 Z-score: 408.3 bits: 83.7 E(85289): 5.3e-16 Smith-Waterman score: 427; 27.1% identity (59.9% similar) in 299 aa overlap (11-287:20-315) 10 20 30 40 50 pF1KE9 MAETSALPTGFGELEVLAVGMVLLVEALSGLSLNTLTIFSFCKTPELRTPC :.. : :. :.. .. .. : ... : : ::::: NP_006 MLRNNLGNSSDSKNEDGSVFSQTEHNIVATYLIMAGMISIISNIIVLGIFIKYKELRTPT 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE9 HLLVLSLALADSGISLNALVAATSSLLRVSHRRWPYGSDGCQAHGFQGFVTALASICSSA . ....::..: :.: . ...: : : : .: :::... .. ..::: . NP_006 NAIIINLAVTDIGVSSIGYPMSAASDLYGS---WKFGYAGCQVYAGLNIFFGMASIGLLT 70 80 90 100 110 120 130 140 150 160 pF1KE9 AIAWGRYHHYCTRS---QLAWNSAVSLVLFVWLSSAFWAALPLLGWGHYDYEPLGTCCTL ..: :: : . ... :. ..:.: .:... ::: .:..::. : .: :. ::. NP_006 VVAVDRYLTICLPDVGRRMTTNTYIGLILGAWINGLFWALMPIIGWASYAPDPTGATCTI 120 130 140 150 160 170 170 180 190 200 210 pF1KE9 DYSKGDRNFTSFLFTMSFFNFAMPLFITITSY------------SLMEQKLGKSGHLQVN .. :.::.:.:. .:. .:: .:: . . : : ..:... :.. NP_006 NWRKNDRSFVSYTMTVIAINFIVPLTVMFYCYYHVTLSIKHHTTSDCTESLNRDWSDQID 180 190 200 210 220 230 220 230 240 250 260 270 pF1KE9 TTLPARTL----LLGWGPYAILYLYAVIADVTSISPKLQMVPALIAKMVPTINAINYALG .: . . :..:.::.:. :.: ..: .: : . .. :.:: : :... NP_006 VTKMSVIMICMFLVAWSPYSIVCLWASFGDPKKIPPPMAIIAPLFAKSSTFYNPCIYVVA 240 250 260 270 280 290 280 290 pF1KE9 NEMVCRGI---WQCLSPQKREKDRTK :. :.. ..: . : NP_006 NKKFRRAMLAMFKCQTHQTMPVTSILPMDVSQNPLASGRI 300 310 320 330 >>NP_150598 (OMIM: 606665) melanopsin isoform 1 [Homo sa (478 aa) initn: 369 init1: 141 opt: 325 Z-score: 369.8 bits: 77.1 E(85289): 7.4e-14 Smith-Waterman score: 368; 29.1% identity (56.1% similar) in 285 aa overlap (19-271:73-352) 10 20 30 40 pF1KE9 MAETSALPTGFGELEVLAVGMVLLVEALSGLSLNTLTIFSFCKTPELR .: :.:. .:.:. : .:..::.. :: NP_150 PSISPTAPGTWAAAWVPLPTVDVPDHAHYTLGTVILLVGLTGMLGNLTVIYTFCRSRSLR 50 60 70 80 90 100 50 60 70 80 90 100 pF1KE9 TPCHLLVLSLALADSGISLN-ALVAATSSLLRVSHRRWPYGSDGCQAHGFQGFVTALASI :: ......::..: .:.. : : :::: ...: .: ::. ..: : . ...:. NP_150 TPANMFIINLAVSDFLMSFTQAPVFFTSSL----YKQWLFGETGCEFYAFCGALFGISSM 110 120 130 140 150 110 120 130 140 150 160 pF1KE9 CSSAAIAWGRYHHYCTRSQLAWNSA----VSLVLF-VWLSSAFWAALPLLGWGHYDYEPL . .::: :: :: ... : ...::. ::: . :. :..::. : : : NP_150 ITLTAIALDRYL-VITRPLATFGVASKRRAAFVLLGVWLYALAWSLPPFFGWSAYVPEGL 160 170 180 190 200 210 170 180 190 200 210 pF1KE9 GTCCTLDYSKGDRNFTSFLFTMSFFNFAMPLFITITSYSLMEQKLGKSGH---------- : :. :: . .. . . : : .::.: : : .. . . ..:. NP_150 LTSCSWDYMSFTPAVRAYTMLLCCFVFFLPLLIIIYCYIFIFRAIRETGRALQTFGACKG 220 230 240 250 260 270 220 230 240 250 pF1KE9 ----------LQVNTTLPARTLL------LGWGPYAILYLYAVIADVTSISPKLQMVPAL :: . . :: :.:.::. . : : . . ..: .. :::. NP_150 NGESLWQRQRLQSECKMAKIMLLVILLFVLSWAPYSAVALVAFAGYAHVLTPYMSSVPAV 280 290 300 310 320 330 260 270 280 290 pF1KE9 IAKMVPTINAINYALGNEMVCRGIWQCLSPQKREKDRTK ::: : : ::. NP_150 IAKASAIHNPIIYAITHPKYRVAIAQHLPCLGVLLGVSRRHSRPYPSYRSTHRSTLTSHT 340 350 360 370 380 390 >>XP_016872445 (OMIM: 606665) PREDICTED: melanopsin isof (528 aa) initn: 369 init1: 141 opt: 325 Z-score: 369.3 bits: 77.2 E(85289): 7.9e-14 Smith-Waterman score: 368; 29.1% identity (56.1% similar) in 285 aa overlap (19-271:73-352) 10 20 30 40 pF1KE9 MAETSALPTGFGELEVLAVGMVLLVEALSGLSLNTLTIFSFCKTPELR .: :.:. .:.:. : .:..::.. :: XP_016 PSISPTAPGTWAAAWVPLPTVDVPDHAHYTLGTVILLVGLTGMLGNLTVIYTFCRSRSLR 50 60 70 80 90 100 50 60 70 80 90 100 pF1KE9 TPCHLLVLSLALADSGISLN-ALVAATSSLLRVSHRRWPYGSDGCQAHGFQGFVTALASI :: ......::..: .:.. : : :::: ...: .: ::. ..: : . ...:. XP_016 TPANMFIINLAVSDFLMSFTQAPVFFTSSL----YKQWLFGETGCEFYAFCGALFGISSM 110 120 130 140 150 110 120 130 140 150 160 pF1KE9 CSSAAIAWGRYHHYCTRSQLAWNSA----VSLVLF-VWLSSAFWAALPLLGWGHYDYEPL . .::: :: :: ... : ...::. ::: . :. :..::. : : : XP_016 ITLTAIALDRYL-VITRPLATFGVASKRRAAFVLLGVWLYALAWSLPPFFGWSAYVPEGL 160 170 180 190 200 210 170 180 190 200 210 pF1KE9 GTCCTLDYSKGDRNFTSFLFTMSFFNFAMPLFITITSYSLMEQKLGKSGH---------- : :. :: . .. . . : : .::.: : : .. . . ..:. XP_016 LTSCSWDYMSFTPAVRAYTMLLCCFVFFLPLLIIIYCYIFIFRAIRETGRALQTFGACKG 220 230 240 250 260 270 220 230 240 250 pF1KE9 ----------LQVNTTLPARTLL------LGWGPYAILYLYAVIADVTSISPKLQMVPAL :: . . :: :.:.::. . : : . . ..: .. :::. XP_016 NGESLWQRQRLQSECKMAKIMLLVILLFVLSWAPYSAVALVAFAGYAHVLTPYMSSVPAV 280 290 300 310 320 330 260 270 280 290 pF1KE9 IAKMVPTINAINYALGNEMVCRGIWQCLSPQKREKDRTK ::: : : ::. XP_016 IAKASAIHNPIIYAITHPKYRVAIAQHLPCLGVLLGVSRRHSRPYPSYRSTHRSTLTSHT 340 350 360 370 380 390 >>NP_055137 (OMIM: 606695) opsin-3 [Homo sapiens] (402 aa) initn: 320 init1: 215 opt: 301 Z-score: 344.1 bits: 72.1 E(85289): 2e-12 Smith-Waterman score: 333; 26.1% identity (54.8% similar) in 303 aa overlap (12-288:39-336) 10 20 30 40 pF1KE9 MAETSALPTGFGELEVLAVGMVLLVEALSGLSLNTLTIFSF : : :: ..: .: :.. : :.. . NP_055 GHGYWDGGGAAGAEGPAPAGTLSPAPLFSPGTYERLA--LLLGSIGLLGVGNNLLVLVLY 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE9 CKTPELRTPCHLLVLSLALADSGISLNALVAATSSLLRVSHRRWPYGSDGCQAHGFQGFV : .:::: :::.....:.: .:: ... . : :: . : . . :: ::.: . NP_055 YKFQRLRTPTHLLLVNISLSDLLVSLFGVTFTFVSCLRNG---WVWDTVGCVWDGFSGSL 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE9 TALASICSSAAIAWGRYHHYCTRSQLAWNSAVSLVLFVWLSSAFWAALPLLGWGHYDYEP ...:: . ...:. :: . . .. : . ..:: : ::. :::::..: . NP_055 FGIVSIATLTVLAYERYIRVVHARVINFSWAWRAITYIWLYSLAWAGAPLLGWNRYILDV 130 140 150 160 170 180 170 180 190 200 210 pF1KE9 LGTCCTLDYSKGDRNFTSFLFTMSFFNFAMPLFITITSYS--LMEQKLGKSGH----LQV : ::.:... : : .::.. . . ...:: . :. :. .. . . .:: NP_055 HGLGCTVDWKSKDANDSSFVLFLFLGCLVVPLGVIAHCYGHILYSIRMLRCVEDLQTIQV 190 200 210 220 230 240 220 230 240 250 260 pF1KE9 NTTLPAR------------TLLLGWGPYAILYLYAVIADVTSISPKLQMVPALIAKMVPT : . :.:. : :: .. . .: . ..: ...: :.:: . NP_055 IKILKYEKKLAKMCFLMIFTFLVCWMPYIVICFLVVNGHGHLVTPTISIVSYLFAKSNTV 250 260 270 280 290 300 270 280 290 pF1KE9 INAINYALGN--------EMVCRGIWQCLSPQKREKDRTK : . :.. ...: . .: : : NP_055 YNPVIYVFMIRKFRRSLLQLLCLRLLRCQRPAKDLPAAGSEMQIRPIVMSQKDGDRPKKK 310 320 330 340 350 360 NP_055 VTFNSSSIIFIITSDESLSVDDSDKTNGSKVDVIQVRPL 370 380 390 400 >>NP_859528 (OMIM: 609042) opsin-5 [Homo sapiens] (354 aa) initn: 296 init1: 135 opt: 295 Z-score: 338.1 bits: 70.8 E(85289): 4.3e-12 Smith-Waterman score: 350; 26.6% identity (58.7% similar) in 286 aa overlap (17-277:34-315) 10 20 30 40 pF1KE9 MAETSALPTGFGELEVLAVGMVL-LVEALSGLSLNTLTIFSFCKTP :..:. : .. :: .. . . .: . NP_859 NHTALPQDERLPHYLRDGDPFASKLSWEADLVAGFYLTIIGILSTFGNGYVLYMSSRRKK 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE9 ELRTPCHLLVLSLALADSGISLNALVAATSSLLRVSHRRWPYGSDGCQAHGFQGFVTALA .:: : ......::. : :::. :. ... .:: .: ::. .:. :: . . NP_859 KLR-PAEIMTINLAVCDLGISV---VGKPFTIISCFCHRWVFGWIGCRWYGWAGFFFGCG 70 80 90 100 110 110 120 130 140 150 160 pF1KE9 SICSSAAIAWGRYHHYCTRSQLAW---NSAVSLVLFVWLSSAFWAALPLLGWGHYDYEPL :. . .:.. :: . : : .: . : . .: ..::...::.: : : ::. NP_859 SLITMTAVSLDRYLKICYLSYGVWLKRKHAYICLAAIWAYASFWTTMPLVGLGDYVPEPF 120 130 140 150 160 170 170 180 190 200 210 pF1KE9 GTCCTLDY--SKGDRNFTSFLFTMSFFNFAMPLFITITSYSLMEQKLGKSGH-------- :: ::::. .... . :.... :: . .: . . :: . :. .:.. NP_859 GTSCTLDWWLAQASVGGQVFILNILFFCLLLPTAVIVFSYVKIIAKVKSSSKEVAHFDSR 180 190 200 210 220 230 220 230 240 250 260 pF1KE9 ------LQVNTTLPARTL----LLGWGPYAILYLYAVIADVTSISPKLQMVPALIAKMVP :... : : . :..: :::.. ...... :: .:..::.:.:: . NP_859 IHSSHVLEMKLTKVAMLICAGFLIAWIPYAVVSVWSAFGRPDSIPIQLSVVPTLLAKSAA 240 250 260 270 280 290 270 280 290 pF1KE9 TINAINY-ALGNEMVCRGIWQCLSPQKREKDRTK : : : .. ...: NP_859 MYNPIIYQVIDYKFACCQTGGLKATKKKSLEGFRLHTVTTVRKSSAVLEIHEEWE 300 310 320 330 340 350 >>XP_016865905 (OMIM: 609042) PREDICTED: opsin-5 isoform (408 aa) initn: 296 init1: 135 opt: 295 Z-score: 337.3 bits: 70.9 E(85289): 4.7e-12 Smith-Waterman score: 350; 26.6% identity (58.7% similar) in 286 aa overlap (17-277:34-315) 10 20 30 40 pF1KE9 MAETSALPTGFGELEVLAVGMVL-LVEALSGLSLNTLTIFSFCKTP :..:. : .. :: .. . . .: . XP_016 NHTALPQDERLPHYLRDGDPFASKLSWEADLVAGFYLTIIGILSTFGNGYVLYMSSRRKK 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE9 ELRTPCHLLVLSLALADSGISLNALVAATSSLLRVSHRRWPYGSDGCQAHGFQGFVTALA .:: : ......::. : :::. :. ... .:: .: ::. .:. :: . . XP_016 KLR-PAEIMTINLAVCDLGISV---VGKPFTIISCFCHRWVFGWIGCRWYGWAGFFFGCG 70 80 90 100 110 110 120 130 140 150 160 pF1KE9 SICSSAAIAWGRYHHYCTRSQLAW---NSAVSLVLFVWLSSAFWAALPLLGWGHYDYEPL :. . .:.. :: . : : .: . : . .: ..::...::.: : : ::. XP_016 SLITMTAVSLDRYLKICYLSYGVWLKRKHAYICLAAIWAYASFWTTMPLVGLGDYVPEPF 120 130 140 150 160 170 170 180 190 200 210 pF1KE9 GTCCTLDY--SKGDRNFTSFLFTMSFFNFAMPLFITITSYSLMEQKLGKSGH-------- :: ::::. .... . :.... :: . .: . . :: . :. .:.. XP_016 GTSCTLDWWLAQASVGGQVFILNILFFCLLLPTAVIVFSYVKIIAKVKSSSKEVAHFDSR 180 190 200 210 220 230 220 230 240 250 260 pF1KE9 ------LQVNTTLPARTL----LLGWGPYAILYLYAVIADVTSISPKLQMVPALIAKMVP :... : : . :..: :::.. ...... :: .:..::.:.:: . XP_016 IHSSHVLEMKLTKVAMLICAGFLIAWIPYAVVSVWSAFGRPDSIPIQLSVVPTLLAKSAA 240 250 260 270 280 290 270 280 290 pF1KE9 TINAINY-ALGNEMVCRGIWQCLSPQKREKDRTK : : : .. ...: XP_016 MYNPIIYQVIDYKFACCQTGGLKATKKKSLEGFRLHTVTTVRKSSAVLEIHEEDKGRLWH 300 310 320 330 340 350 >>XP_016865900 (OMIM: 609042) PREDICTED: opsin-5 isoform (298 aa) initn: 332 init1: 135 opt: 288 Z-score: 331.2 bits: 69.3 E(85289): 1e-11 Smith-Waterman score: 343; 27.0% identity (58.7% similar) in 259 aa overlap (43-277:5-259) 20 30 40 50 60 70 pF1KE9 ELEVLAVGMVLLVEALSGLSLNTLTIFSFCKTPELRTPCHLLVLSLALADSGISLNALVA . .:: : ......::. : :::. :. XP_016 MSSRRKKKLR-PAEIMTINLAVCDLGISV---VG 10 20 30 80 90 100 110 120 pF1KE9 ATSSLLRVSHRRWPYGSDGCQAHGFQGFVTALASICSSAAIAWGRYHHYCTRSQLAW--- ... .:: .: ::. .:. :: . .:. . .:.. :: . : : .: XP_016 KPFTIISCFCHRWVFGWIGCRWYGWAGFFFGCGSLITMTAVSLDRYLKICYLSYGVWLKR 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE9 NSAVSLVLFVWLSSAFWAALPLLGWGHYDYEPLGTCCTLDY--SKGDRNFTSFLFTMSFF . : . .: ..::...::.: : : ::.:: ::::. .... . :.... :: XP_016 KHAYICLAAIWAYASFWTTMPLVGLGDYVPEPFGTSCTLDWWLAQASVGGQVFILNILFF 100 110 120 130 140 150 190 200 210 220 pF1KE9 NFAMPLFITITSYSLMEQKLGKSGH--------------LQVNTTLPARTL----LLGWG . .: . . :: . :. .:.. :... : : . :..: XP_016 CLLLPTAVIVFSYVKIIAKVKSSSKEVAHFDSRIHSSHVLEMKLTKVAMLICAGFLIAWI 160 170 180 190 200 210 230 240 250 260 270 280 pF1KE9 PYAILYLYAVIADVTSISPKLQMVPALIAKMVPTINAINY-ALGNEMVCRGIWQCLSPQK :::.. ...... :: .:..::.:.:: . : : : .. ...: XP_016 PYAVVSVWSAFGRPDSIPIQLSVVPTLLAKSAAMYNPIIYQVIDYKFACCQTGGLKATKK 220 230 240 250 260 270 290 pF1KE9 REKDRTK XP_016 KSLEGFRLHTVTTVRKSSAVLEIHEEWE 280 290 295 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 01:51:48 2016 done: Mon Nov 7 01:51:49 2016 Total Scan time: 7.180 Total Display time: 0.020 Function used was FASTA [36.3.4 Apr, 2011]