FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1382, 113 aa 1>>>pF1KE1382 113 - 113 aa - 113 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.2556+/-0.000263; mu= 16.2630+/- 0.016 mean_var=59.2701+/-11.951, 0's: 0 Z-trim(119.9): 24 B-trim: 1569 in 1/54 Lambda= 0.166593 statistics sampled from 34498 (34523) to 34498 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.788), E-opt: 0.2 (0.405), width: 16 Scan time: 4.900 The best scores are: opt bits E(85289) NP_003323 (OMIM: 221770,604142) TYRO protein tyros ( 113) 731 182.7 1.1e-46 NP_937758 (OMIM: 221770,604142) TYRO protein tyros ( 112) 714 178.6 1.8e-45 NP_001166985 (OMIM: 221770,604142) TYRO protein ty ( 102) 538 136.3 9.2e-33 NP_001166986 (OMIM: 221770,604142) TYRO protein ty ( 101) 521 132.2 1.6e-31 NP_000723 (OMIM: 186790,615617) T-cell surface gly ( 171) 130 38.5 0.0044 XP_016874032 (OMIM: 186790,615617) PREDICTED: T-ce ( 171) 130 38.5 0.0044 >>NP_003323 (OMIM: 221770,604142) TYRO protein tyrosine (113 aa) initn: 731 init1: 731 opt: 731 Z-score: 959.3 bits: 182.7 E(85289): 1.1e-46 Smith-Waterman score: 731; 100.0% identity (100.0% similar) in 113 aa overlap (1-113:1-113) 10 20 30 40 50 60 pF1KE1 MGGLEPCSRLLLLPLLLAVSGLRPVQAQAQSDCSCSTVSPGVLAGIVMGDLVLTVLIALA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 MGGLEPCSRLLLLPLLLAVSGLRPVQAQAQSDCSCSTVSPGVLAGIVMGDLVLTVLIALA 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 VYFLGRLVPRGRGAAEAATRKQRITETESPYQELQGQRSDVYSDLNTQRPYYK ::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 VYFLGRLVPRGRGAAEAATRKQRITETESPYQELQGQRSDVYSDLNTQRPYYK 70 80 90 100 110 >>NP_937758 (OMIM: 221770,604142) TYRO protein tyrosine (112 aa) initn: 533 init1: 500 opt: 714 Z-score: 937.3 bits: 178.6 E(85289): 1.8e-45 Smith-Waterman score: 714; 99.1% identity (99.1% similar) in 113 aa overlap (1-113:1-112) 10 20 30 40 50 60 pF1KE1 MGGLEPCSRLLLLPLLLAVSGLRPVQAQAQSDCSCSTVSPGVLAGIVMGDLVLTVLIALA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_937 MGGLEPCSRLLLLPLLLAVSGLRPVQAQAQSDCSCSTVSPGVLAGIVMGDLVLTVLIALA 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 VYFLGRLVPRGRGAAEAATRKQRITETESPYQELQGQRSDVYSDLNTQRPYYK ::::::::::::::::: ::::::::::::::::::::::::::::::::::: NP_937 VYFLGRLVPRGRGAAEA-TRKQRITETESPYQELQGQRSDVYSDLNTQRPYYK 70 80 90 100 110 >>NP_001166985 (OMIM: 221770,604142) TYRO protein tyrosi (102 aa) initn: 538 init1: 538 opt: 538 Z-score: 709.2 bits: 136.3 E(85289): 9.2e-33 Smith-Waterman score: 628; 90.3% identity (90.3% similar) in 113 aa overlap (1-113:1-102) 10 20 30 40 50 60 pF1KE1 MGGLEPCSRLLLLPLLLAVSGLRPVQAQAQSDCSCSTVSPGVLAGIVMGDLVLTVLIALA :::::::::::::::::::: ::::::::::::::::::::::::::::: NP_001 MGGLEPCSRLLLLPLLLAVS-----------DCSCSTVSPGVLAGIVMGDLVLTVLIALA 10 20 30 40 70 80 90 100 110 pF1KE1 VYFLGRLVPRGRGAAEAATRKQRITETESPYQELQGQRSDVYSDLNTQRPYYK ::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VYFLGRLVPRGRGAAEAATRKQRITETESPYQELQGQRSDVYSDLNTQRPYYK 50 60 70 80 90 100 >>NP_001166986 (OMIM: 221770,604142) TYRO protein tyrosi (101 aa) initn: 430 init1: 305 opt: 521 Z-score: 687.2 bits: 132.2 E(85289): 1.6e-31 Smith-Waterman score: 611; 89.4% identity (89.4% similar) in 113 aa overlap (1-113:1-101) 10 20 30 40 50 60 pF1KE1 MGGLEPCSRLLLLPLLLAVSGLRPVQAQAQSDCSCSTVSPGVLAGIVMGDLVLTVLIALA :::::::::::::::::::: ::::::::::::::::::::::::::::: NP_001 MGGLEPCSRLLLLPLLLAVS-----------DCSCSTVSPGVLAGIVMGDLVLTVLIALA 10 20 30 40 70 80 90 100 110 pF1KE1 VYFLGRLVPRGRGAAEAATRKQRITETESPYQELQGQRSDVYSDLNTQRPYYK ::::::::::::::::: ::::::::::::::::::::::::::::::::::: NP_001 VYFLGRLVPRGRGAAEA-TRKQRITETESPYQELQGQRSDVYSDLNTQRPYYK 50 60 70 80 90 100 >>NP_000723 (OMIM: 186790,615617) T-cell surface glycopr (171 aa) initn: 110 init1: 94 opt: 130 Z-score: 176.4 bits: 38.5 E(85289): 0.0044 Smith-Waterman score: 130; 32.9% identity (67.1% similar) in 82 aa overlap (25-105:86-163) 10 20 30 40 50 pF1KE1 MGGLEPCSRLLLLPLLLAVSGLRPVQAQAQSDCSCSTVSPGVLAGIVMGDLVLT ::.. . :: ..:...:::.. :.. : NP_000 TRLDLGKRILDPRGIYRCNGTDIYKDKESTVQVHYRMCQSCVELDPATVAGIIVTDVIAT 60 70 80 90 100 110 60 70 80 90 100 110 pF1KE1 VLIALAVY-FLGRLVPRGRGAAEAATRKQRITETESPYQELQGQRSDVYSDLNTQRPYYK .:.::.:. : :. . : :::.. : . .... :: :. . . :: : NP_000 LLLALGVFCFAGHETGRLSGAADT----QALLRNDQVYQPLRDRDDAQYSHLGGNWARNK 120 130 140 150 160 170 >>XP_016874032 (OMIM: 186790,615617) PREDICTED: T-cell s (171 aa) initn: 110 init1: 94 opt: 130 Z-score: 176.4 bits: 38.5 E(85289): 0.0044 Smith-Waterman score: 130; 32.9% identity (67.1% similar) in 82 aa overlap (25-105:86-163) 10 20 30 40 50 pF1KE1 MGGLEPCSRLLLLPLLLAVSGLRPVQAQAQSDCSCSTVSPGVLAGIVMGDLVLT ::.. . :: ..:...:::.. :.. : XP_016 TRLDLGKRILDPRGIYRCNGTDIYKDKESTVQVHYRMCQSCVELDPATVAGIIVTDVIAT 60 70 80 90 100 110 60 70 80 90 100 110 pF1KE1 VLIALAVY-FLGRLVPRGRGAAEAATRKQRITETESPYQELQGQRSDVYSDLNTQRPYYK .:.::.:. : :. . : :::.. : . .... :: :. . . :: : XP_016 LLLALGVFCFAGHETGRLSGAADT----QALLRNDQVYQPLRDRDDAQYSHLGGNWARNK 120 130 140 150 160 170 113 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 01:52:21 2016 done: Mon Nov 7 01:52:22 2016 Total Scan time: 4.900 Total Display time: -0.050 Function used was FASTA [36.3.4 Apr, 2011]