FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1538, 117 aa 1>>>pF1KE1538 117 - 117 aa - 117 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4413+/-0.000273; mu= 11.0291+/- 0.017 mean_var=80.8667+/-15.841, 0's: 0 Z-trim(120.7): 26 B-trim: 66 in 1/56 Lambda= 0.142623 statistics sampled from 36328 (36354) to 36328 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.791), E-opt: 0.2 (0.426), width: 16 Scan time: 4.820 The best scores are: opt bits E(85289) NP_002629 (OMIM: 182257) elafin preproprotein [Hom ( 117) 813 175.5 1.7e-44 NP_003055 (OMIM: 107285) antileukoproteinase precu ( 132) 210 51.5 4.3e-07 XP_011526904 (OMIM: 605161) PREDICTED: WAP four-di ( 123) 174 44.0 6.9e-05 NP_663627 (OMIM: 605161) WAP four-disulfide core d ( 123) 174 44.0 6.9e-05 XP_011526903 (OMIM: 605161) PREDICTED: WAP four-di ( 123) 174 44.0 6.9e-05 NP_543145 (OMIM: 609872) WAP four-disulfide core d ( 111) 166 42.3 0.0002 >>NP_002629 (OMIM: 182257) elafin preproprotein [Homo sa (117 aa) initn: 813 init1: 813 opt: 813 Z-score: 919.6 bits: 175.5 E(85289): 1.7e-44 Smith-Waterman score: 813; 100.0% identity (100.0% similar) in 117 aa overlap (1-117:1-117) 10 20 30 40 50 60 pF1KE1 MRASSFLIVVVFLIAGTLVLEAAVTGVPVKGQDTVKGRVPFNGQDPVKGQVSVKGQDKVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 MRASSFLIVVVFLIAGTLVLEAAVTGVPVKGQDTVKGRVPFNGQDPVKGQVSVKGQDKVK 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 AQEPVKGPVSTKPGSCPIILIRCAMLNPPNRCLKDTDCPGIKKCCEGSCGMACFVPQ ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 AQEPVKGPVSTKPGSCPIILIRCAMLNPPNRCLKDTDCPGIKKCCEGSCGMACFVPQ 70 80 90 100 110 >>NP_003055 (OMIM: 107285) antileukoproteinase precursor (132 aa) initn: 315 init1: 192 opt: 210 Z-score: 248.4 bits: 51.5 E(85289): 4.3e-07 Smith-Waterman score: 216; 33.8% identity (52.3% similar) in 130 aa overlap (1-116:1-129) 10 20 30 40 pF1KE1 MRASSFLIVVVFLIAGTLVLEAAV-------TGV--PVKGQDTVKGRVPFNGQD---PVK :..:... .:.: :::. :. .:: : :. . .. . : .: : : NP_003 MKSSGLFPFLVLLALGTLAPWAVEGSGKSFKAGVCPPKKSAQCLRYKKPECQSDWQCPGK 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE1 GQVSVKGQDKVKAQEPVKGPVST--KPGSCPIILIRCAMLNPPNRCLKDTDCPGIKKCCE . .: .:: : : :::.::. .: :::::: : : .: ::: NP_003 KRCC-PDTCGIKCLDPVDTPNPTRRKPGKCPVTYGQCLMLNPPNFCEMDGQCKRDLKCCM 70 80 90 100 110 110 pF1KE1 GSCGMACFVPQ : :: .: : NP_003 GMCGKSCVSPVKA 120 130 >>XP_011526904 (OMIM: 605161) PREDICTED: WAP four-disulf (123 aa) initn: 224 init1: 107 opt: 174 Z-score: 208.8 bits: 44.0 E(85289): 6.9e-05 Smith-Waterman score: 176; 35.4% identity (54.6% similar) in 130 aa overlap (1-116:1-120) 10 20 30 40 50 60 pF1KE1 MRASSFLIVVVFLIAGTLVLEAAVTGVPVKGQDTVKGRVPFNGQDPVKGQVSVKGQDKVK ::..:.:.. ..: .:. . :: : ::. . : : .: : .:: : XP_011 MRTQSLLLLGALLAVGSQL--PAVFGRK-KGEKS-GGCPPDDG--PC--LLSVPDQCVED 10 20 30 40 50 70 80 90 100 pF1KE1 AQEPVKG------------P-VSTKPGSCPIILIRCAMLNPPNR-CLKDTDCPGIKKCCE .: :. : ::.: :::: .:: :.: :. : ::.:: : :.::. XP_011 SQCPLTRKCCYRACFRQCVPRVSVKLGSCPEDQLRC--LSPMNHLCHKDSDCSGKKRCCH 60 70 80 90 100 110 110 pF1KE1 GSCGMACFVPQ ..:: : : XP_011 SACGRDCRDPARG 120 >>NP_663627 (OMIM: 605161) WAP four-disulfide core domai (123 aa) initn: 224 init1: 107 opt: 174 Z-score: 208.8 bits: 44.0 E(85289): 6.9e-05 Smith-Waterman score: 176; 35.4% identity (54.6% similar) in 130 aa overlap (1-116:1-120) 10 20 30 40 50 60 pF1KE1 MRASSFLIVVVFLIAGTLVLEAAVTGVPVKGQDTVKGRVPFNGQDPVKGQVSVKGQDKVK ::..:.:.. ..: .:. . :: : ::. . : : .: : .:: : NP_663 MRTQSLLLLGALLAVGSQL--PAVFGRK-KGEKS-GGCPPDDG--PC--LLSVPDQCVED 10 20 30 40 50 70 80 90 100 pF1KE1 AQEPVKG------------P-VSTKPGSCPIILIRCAMLNPPNR-CLKDTDCPGIKKCCE .: :. : ::.: :::: .:: :.: :. : ::.:: : :.::. NP_663 SQCPLTRKCCYRACFRQCVPRVSVKLGSCPEDQLRC--LSPMNHLCHKDSDCSGKKRCCH 60 70 80 90 100 110 110 pF1KE1 GSCGMACFVPQ ..:: : : NP_663 SACGRDCRDPARG 120 >>XP_011526903 (OMIM: 605161) PREDICTED: WAP four-disulf (123 aa) initn: 224 init1: 107 opt: 174 Z-score: 208.8 bits: 44.0 E(85289): 6.9e-05 Smith-Waterman score: 176; 35.4% identity (54.6% similar) in 130 aa overlap (1-116:1-120) 10 20 30 40 50 60 pF1KE1 MRASSFLIVVVFLIAGTLVLEAAVTGVPVKGQDTVKGRVPFNGQDPVKGQVSVKGQDKVK ::..:.:.. ..: .:. . :: : ::. . : : .: : .:: : XP_011 MRTQSLLLLGALLAVGSQL--PAVFGRK-KGEKS-GGCPPDDG--PC--LLSVPDQCVED 10 20 30 40 50 70 80 90 100 pF1KE1 AQEPVKG------------P-VSTKPGSCPIILIRCAMLNPPNR-CLKDTDCPGIKKCCE .: :. : ::.: :::: .:: :.: :. : ::.:: : :.::. XP_011 SQCPLTRKCCYRACFRQCVPRVSVKLGSCPEDQLRC--LSPMNHLCHKDSDCSGKKRCCH 60 70 80 90 100 110 110 pF1KE1 GSCGMACFVPQ ..:: : : XP_011 SACGRDCRDPARG 120 >>NP_543145 (OMIM: 609872) WAP four-disulfide core domai (111 aa) initn: 216 init1: 95 opt: 166 Z-score: 200.5 bits: 42.3 E(85289): 0.0002 Smith-Waterman score: 166; 42.9% identity (55.4% similar) in 56 aa overlap (61-116:20-73) 40 50 60 70 80 90 pF1KE1 GQDTVKGRVPFNGQDPVKGQVSVKGQDKVKAQEPVKGPVSTKPGSCPIILIRCAMLNPPN : : :: . : : :: .:: .:: NP_543 MGSSSFLVLMVSLVLVTLVAVEGVKEGIE-KAGVCPADNVRCFKSDPP- 10 20 30 40 100 110 pF1KE1 RCLKDTDCPGIKKCCEGSCGMACFVPQ .: : :: : .::: ::. : .: NP_543 QCHTDQDCLGERKCCYLHCGFKCVIPVKELEEGGNKDEDVSRPYPEPGWEAKCPGSSSTR 50 60 70 80 90 100 117 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 01:52:52 2016 done: Mon Nov 7 01:52:53 2016 Total Scan time: 4.820 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]