FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4371, 390 aa 1>>>pF1KE4371 390 - 390 aa - 390 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.5058+/-0.000724; mu= 12.9244+/- 0.043 mean_var=123.4385+/-24.411, 0's: 0 Z-trim(113.9): 10 B-trim: 132 in 1/50 Lambda= 0.115438 statistics sampled from 14454 (14459) to 14454 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.786), E-opt: 0.2 (0.444), width: 16 Scan time: 3.390 The best scores are: opt bits E(32554) CCDS10278.1 NEIL1 gene_id:79661|Hs108|chr15 ( 390) 2683 457.4 9.9e-129 >>CCDS10278.1 NEIL1 gene_id:79661|Hs108|chr15 (390 aa) initn: 2683 init1: 2683 opt: 2683 Z-score: 2424.6 bits: 457.4 E(32554): 9.9e-129 Smith-Waterman score: 2683; 99.7% identity (100.0% similar) in 390 aa overlap (1-390:1-390) 10 20 30 40 50 60 pF1KE4 MPEGPELHLASQFVNEACRALVFGGCVEKSSVSRNPEVPFESSAYRISASARGKELRLIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 MPEGPELHLASQFVNEACRALVFGGCVEKSSVSRNPEVPFESSAYRISASARGKELRLIL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 SPLPGAQPQQEPLALVFRFGMSGSFQLVPREELPRHAHLRFYTAPPGPRLALCFVDIRRF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 SPLPGAQPQQEPLALVFRFGMSGSFQLVPREELPRHAHLRFYTAPPGPRLALCFVDIRRF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 GRWDLGGKWQPGRGPCVLQEYQQFRENVLRNLADKAFDRPICEALLDQRFFNGIGNYLRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 GRWDLGGKWQPGRGPCVLQEYQQFRENVLRNLADKAFDRPICEALLDQRFFNGIGNYLRA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 EILYRLKIPPFEKARSVLEALQQHRPSPELTLSQKIRTKLQNPDLLELCHSVPKEVVQLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 EILYRLKIPPFEKARSVLEALQQHRPSPELTLSQKIRTKLQNPDLLELCHSVPKEVVQLG 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 GRGYGSESGEEDFAAFRAWLRCYGMPGMSSLQDRHGRTIWFQGDPGPLAPKGRKSRKKKS :.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 GKGYGSESGEEDFAAFRAWLRCYGMPGMSSLQDRHGRTIWFQGDPGPLAPKGRKSRKKKS 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE4 KATQLSPEDRVEDALPPSKAPSRTRRAKRDLPKRTATQRPEGTSLQQDPEAPTVPKKGRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 KATQLSPEDRVEDALPPSKAPSRTRRAKRDLPKRTATQRPEGTSLQQDPEAPTVPKKGRR 310 320 330 340 350 360 370 380 390 pF1KE4 KGRQAASGHCRPRKVKADIPSLEPEGTSAS :::::::::::::::::::::::::::::: CCDS10 KGRQAASGHCRPRKVKADIPSLEPEGTSAS 370 380 390 390 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 02:00:54 2016 done: Sun Nov 6 02:00:55 2016 Total Scan time: 3.390 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]